LOC110492757 (LOC106567223)


Basic Information

Item Value
gene id LOC110492757
gene name LOC106567223
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46490075 ~ 46494132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567229.2
CCCCTACCCTCCCCCTCGTTGTAACAACCTTAAGTGTTTTTCCTTCTCAGTTCGTTTTGTTCCACCGCTGCAAACCACGACACGTCCCCGGACCGGAGAGCTTGTTTGGATATGGGAAGGACTATTCAACTTGCCCCCTATGAATTTATAAAAAGTTGCTTTGCTGTTTCGATTCGCCTATTTGGAAGCCATTTATGCAGATAAGAGAGAATGGGTTGCTGTTCAGGACGATGTATGCTGATCTTCCTCTGCACTCTCCAAGTGATGACAGCATTGGAGAGGCAGGCTTTTGACTTCCTTGGTTACCAGTGGGCTCCCATCATGGTCAACTTCCTGCAAATAATCATGGTTATCCTCAGCCTCTTTGGAACCATCCAGTACAGGCCACGCTACGTTGTTCTATACCTGCTGTGGACATTACTGTGGGTGGCCTGGAATGTCTTTGTGTGCTGTTTCTATTTGGACCTGGGAGGCCTTTCCAAGGAGAGCGACCTGCTATCCCTGGGTGTATCCTCACACCTTTCATGGTGGAAAGACAACGGGCCAGGCTGTGATGACAGGGACCTTCCTGCCACTAGGTGGCAGAGTCTGGAGAGCCCAGAACTCATCTATGCTCTGGGATGCTGGCTGGAATACCAATACATAGAGGTCCTACATTGTATCATACAACTCCTAATCTCTCTCTTGGGATTCGTCTATGCCTGCTATATGGTCAGCACCTTCACTGAGGAGGAGGACAGCTTTAATTTCATTGGTGGGGTCCATTACCCATCTAAAACATCGCCGCTGTATTTATAGTGTACAATTGGGCTACTATAAGTAAAGGCTTGCAAGTGGGTTGAAAATGACTGACAAGCAAGGAGGGCAGAAGAGGAACGAGTGAGTGAAATACCTACTTTGGAAGAGTGAAATCACATCTCCAGTCACTGAAACAGAAGACATTCCCACACTGCACAAAAACATAATTCCTCAGCCTCCCGGGCACTCTTAATGCATACTAGCCTACACCAACAGTTCAGTGCAGTTATGGTcaatactagcctggtcccaggtcagtTTGTGCTTTTGCCTACTCCATTTTCATTGTCAagctgtttggcatgacaattccATAAGTAGTTGGCAAGAGAGGAGAAACAACAGAGTGGCACCCTGCGGGCTATACagtaggtcagtacaggtacaatCAGAAAACTACTGATACTTCTGACATAACATGTATCAGTGTACAGGGAATGGTATGTGTTGTATTTTTGGTATTTggaattttattaggatccccattagctgttgtaaaagcagcagctactcttcctggggtccacacaaaacatgaaacataatgcagaatgacataata

Function

NR:

description
sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567229.2 True 1360 mRNA 0.46 7 46490075 46494132

Neighbor

gene id symbol gene type direction distance location
LOC110492754 LOC106567220 coding downstream 3569 46478316 ~ 46486506 (-)
LOC110492749 LOC106567344 coding downstream 42041 46442923 ~ 46448034 (-)
LOC110492750 LOC106567218 coding downstream 50261 46423152 ~ 46439814 (-)
LOC110492748 ppdpf coding downstream 70079 46416560 ~ 46419996 (-)
LOC110492746 LOC106567215 coding downstream 118853 46341080 ~ 46371222 (-)
LOC110491073 LOC106572454 coding upstream 19608 46513740 ~ 46518909 (-)
LOC110492758 LOC106567225 coding upstream 29961 46524093 ~ 46531221 (-)
LOC110492764 fkb1a coding upstream 104565 46598697 ~ 46601691 (-)
LOC110492766 f110a coding upstream 112578 46606710 ~ 46610975 (-)
LOC110491075 LOC106567229 coding upstream 117077 46611209 ~ 46654906 (-)
G1380786 NA non-coding downstream 69634 46420167 ~ 46420441 (-)
G1380741 NA non-coding downstream 150992 46338846 ~ 46339083 (-)
G1380722 NA non-coding downstream 205293 46284545 ~ 46284782 (-)
G1380721 LOC100701228 non-coding downstream 212588 46277225 ~ 46277487 (-)
G1380720 NA non-coding downstream 213037 46276708 ~ 46277038 (-)
G1380895 NA non-coding upstream 107983 46602115 ~ 46603005 (-)
G1380965 NA non-coding upstream 282061 46776193 ~ 46776427 (-)
G1380966 NA non-coding upstream 282582 46776714 ~ 46776950 (-)
G1381021 NA non-coding upstream 369365 46863497 ~ 46868956 (-)
G1380431 NA other downstream 784622 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 862377 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 1169697 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1525593 44621739 ~ 44964691 (-)
LOC110492767 LOC106572444 other upstream 163335 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 265155 46724969 ~ 46761466 (-)
G1381036 NA other upstream 384479 46878611 ~ 46879146 (-)
LOC110492137 LOC106567248 other upstream 593037 47081938 ~ 47089563 (-)

Expression


Co-expression Network