LOC110492768 (LOC100380661)


Basic Information

Item Value
gene id LOC110492768
gene name LOC100380661
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46706224 ~ 46722600 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567248.2
AGGATGTAAcgcctccctccccccacccctctgatCCTCTTATCGACAAGCAGGCGGCCAAGATGGATGTTGTGAACCAGTTGGTGGCCACCGGGCAGTTCACCATAATCAAACAGCCTTTGGGATTTatgaaaatcctacaatggATCTTTGCTATCTTTGCTTTCTCGACATGCGGCAGCTACTCTGGCATGTTCAAGATGAGTGTGGAGTGTAAAAACCGGTCAGAGAGTGACCTGAGCATTGAGGTGGAGTTTGAGTATCCATTCAGGCTACATCAGGTGTACTTCGATGCCCCAACCTGTAAGGGGGAAAGCCCTGAGCGTCTGTTCCTGATCGGAGACTACTCCTCCTCAGCTGAGTTCTTTGTCACCGTCGGTGTTTTCTCCTTCCTCTACTCCATGGCAGCCCTTTCTGTGTACGTTTTCATTCTGGAGAAATACCGTGAAGGCTGCAAGGGAGCCCAGATTGACTTCGTTGTGACGTCTGTGTTCACCTTCTTCTGGCTGGTCGCTTCTTCTGCCTGGGCTAAAGGTTTGTCGGATGTGAAGGCAGCCACCGACCCAGACAAGGTCCTCTTACTGATCGAGGCATGCGACGAACCAGAGAACCGCTGCCGTGAAGTCCACGACCCTGTCGTTTCTGGTCTCAACACATCTGTGGCGTTTGGCTTCCTGAACCTGATCCTGTGGGGAGGAAACCTGTGGTTTGTGTTCAAAGAAACCGGCTGGATGGCAGCCTTCGGAGGCACATATGCACCTTCCCAGGAGAAGGCGCCTGCTCCAGAGTCCTTTGGCCAGGAAGGCTATGGGCAAGAGGGCTACGCACAACAGGGGGACGCCTATGCCGGCACCCAGGGAGGCTACCAGCCTGACTATGGCCAGGGTGGCTACACCGAGGGAGGCGGAGACTATCAGCAGGGGGGATACGAACAGCAGCCCACCTCCTTTGCCAATCAGATGTGAGCTGGTCCACCCTACAGCATCTGGAAGCTGggccaCCGTGTGATTTGGGAGTGTGGTGCCTGACCACCATCCACAATTCCCCActcctctgtttgtctgtttgtgcaTCTGTGAGTTgacaagaggagggagggatggaagacgGTGGGGTCTTGGGAGGGGAATTTAGCAACACCGTGTCCGTTTGGGTTATTTTGGTGAGCGGGAAATGGGTCCTTACAGTAACATGCTGTTTCTTCTGTTGATGTATTTAACTGTAGAAGACAACAGGGGGTTTTCCATTTGGTCATATGAGGAAAAACTTGAATACAATATACAAAAAACTACAAAGATCAATCTTATAAGGGAATAACACTTAAATGGACAATAATGGTAGTAGTATTTAAGAATGTatttgtctgtgctgtgtaaaTATCAACAtattaatatataaatatatgtacaCAGTTGAAAAATTGTGCACTCCATATTAGTTGTTATACAACAAATGTAGAGCGCAGAGTTATTCAATTGTATTTATTTCAGTTCTGTTTAGGTCACATAGTTCTACCCTCATTGTGCTCTAATATTTATGttgtgtgtttattttatttcccAACATTCGTTTTTATTTCTCATTTTGATGTTTTTGTTTATTCATTTTCTATTTTCTCATTGCGCTTTTTTATTTGTTCAACATTACTGAGTGAGTTTGTGACTGTGACAGCAGTGGAGAGGTGTTAGCAGTGATTTGTGTGTTTAACATGGGTTACATTCATTACAACTTGTGTTCGTTGACGTTTTATGTTTTTCCATCAAAATATTTCTCAAGCAACGATTTGGCTATGTTTGTTCCAGAGAATCTCTTAAAAGCTGTAAAAAGTCCAAAATGCATCTAGGATAATGAAAAAGTAGTTAGCACGGTAGCACTTGGTATTTTGCTAATATTATGCTGTTCCTAAAAACTGCTGTACGTAGTGTTCTCTCAGCACTCTTATTTAGAGATGATTTGAGGTTGTGAATCAGGGAAGACAACGGATGTTGAGGGgcatcacttttttttttttttggattgTAAATGTAGTTTAGAAATCGGCATCTGAAAAATTTGGTCCAGAACCCATTCCTGTTTTAATATAGTCTAGGGATGAGTCATCAGACAGAGTTAGTCATCGTGTTTAATCACCATTTATAATGCTCGTCTGATCATAACGCATGTAAATATTTACACCGGAAAAAAATCAGTATGGCACAATGTGCGCCGTTTTCAACACCATACACAAGCCATAGGAAATAATGATAGTACTTTTAACATATTAATATAGCCAACTGAGGTGTTCTGAACAGTATCTTATTTCCATGTAAAAACATAAATCCTGCATCCCCCACAACACCCCTTTACTCTCAAAACAAAAGAGGTTTTGCATGTCTGACTCTTGGACTAAAAGCAGCCTGGAACAAAAGTGAAGGGGGAAAGGCAAGTGGCATATAAGTGTTAGAGCATATTAAGTAATATGATGTATGTTTGGCTCATCGTAAGGTGACAGCACAGAGCAGCTCCGATATATTTCACACAAATCACACAGAAAGTAAATGTGCTACAATAATCAGGTTGGCCTACCCGCTGCACTGCCAATCCTCTGTTTGGATAGAAGAAAAACTGTATTGCCAAATGATAACAGGACAGGTGCGTATTGAGCGATAGATTTTGCTTCCACAGTTATCATCACAATGGAAACTGATATTGTTTTTCATTCATATTATTCCGTTATGCAGTTTTGGATGAATTCCTTTTTTTGGATCATTTTTTCTTTATCAGGCGGTGTAGAGACACctgactttctatctcttcctctgtgttccctctctctttctatctctctctttccctcgctctctcttttttctctctctctctctgtagttctTATAAATATGCTCAATGAAATACATATACTCTGTTGTTAGTGGTGAATGATGTCTTGTGATACTCTTTACGCCTTTGGATAGTGCTGTGTTTATTGTGTATGATGTATTCTTATTAGTATTTATGATCATGACTATGACAATATATCCATTGTATTCTTATTCTATGGAATCCATGTGAAACAAAATCAAATAAACTTGAAATTATTCTGTTGAAGGTTAAA

Function

NR:

description
PREDICTED: synaptophysin

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567248.2 True 3094 mRNA 0.42 7 46706224 46722600

Neighbor

gene id symbol gene type direction distance location
LOC110492767 LOC106572444 coding downstream 37462 46657459 ~ 46668762 (-)
LOC110491075 LOC106567229 coding downstream 51318 46611209 ~ 46654906 (-)
LOC110492766 f110a coding downstream 95249 46606710 ~ 46610975 (-)
LOC110492764 fkb1a coding downstream 104533 46598697 ~ 46601691 (-)
LOC110492758 LOC106567225 coding downstream 175003 46524093 ~ 46531221 (-)
LOC110491077 LOC106567232 coding upstream 2369 46724969 ~ 46761466 (-)
LOC110492770 LOC106567233 coding upstream 41202 46763802 ~ 46765835 (-)
LOC110492773 timm17b coding upstream 43270 46765870 ~ 46770549 (-)
LOC110492774 LOC106567235 coding upstream 55070 46777670 ~ 46795835 (-)
LOC110492777 LOC106567238 coding upstream 222641 46945241 ~ 46974583 (-)
G1380895 NA non-coding downstream 103219 46602115 ~ 46603005 (-)
G1380817 NA non-coding downstream 157426 46487150 ~ 46548798 (-)
G1380768 NA non-coding downstream 188852 46440060 ~ 46517372 (-)
G1380786 NA non-coding downstream 285783 46420167 ~ 46420441 (-)
G1380965 NA non-coding upstream 53593 46776193 ~ 46776427 (-)
G1380966 NA non-coding upstream 54114 46776714 ~ 46776950 (-)
G1381021 NA non-coding upstream 140897 46863497 ~ 46868956 (-)
G1381025 NA non-coding upstream 141125 46863725 ~ 46868712 (-)
G1380994 NA non-coding upstream 184034 46906634 ~ 46916918 (-)
LOC110492748 ppdpf other downstream 286346 46416560 ~ 46419996 (-)
G1380431 NA other downstream 1000771 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 1078526 45613938 ~ 45627786 (-)
G1381036 NA other upstream 156011 46878611 ~ 46879146 (-)
LOC110492137 LOC106567248 other upstream 364569 47081938 ~ 47089563 (-)
LOC110492148 LOC106567259 other upstream 702712 47409235 ~ 47908274 (-)
G1382721 NA other upstream 1220779 47943379 ~ 47946222 (-)

Expression


Co-expression Network