LOC110491077 (LOC106567232)


Basic Information

Item Value
gene id LOC110491077
gene name LOC106567232
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46724969 ~ 46761466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945777.1
ATGGCAGGAAAAGagGATGGCGTCTCCTTGGCCGGCTCGGTTGCCGGGGACAAGTCCGACATCCTCGGCTCTGCTGCCTCGGGCAAGAAGAGGGGTGGTGGACAGAAGAAGCAGATACAAGCCAACAAATCTGCTCTCCGAGCCCCTCGAGCCCTCTGCTGCCTCACCCTCAGTAACCCCATCCGCATGGCTGCCTTAGCCCTTGTTGAATGGAAATATCCTTCAATGATGatACCTTTTGATATCTTCATTCTACTTGCTATCTTTGCCAACTGTGTGGCCCTGGGTGTATCTAAACCCTTCCCCGAGGAGGACTCCAATTCCACCAACCACAACCTGGAACAAGTAGAGTATGTCTTCCTGGTCATCTTCACCATTGAAACCTTCACTAAGATCCTGGCCTATGGCTTGGTCATGCACCCTAGCGCCTACATCCGCAGTGGCTGGAATTTGCTTGATTTTGTCATCGTTGTCGTTGGGTTGTTCAGTGTGGTTGCTGAGGGGACGGCCGACCACAAGCCTGGAGAGGCCCACCACGCAGCAGGCAAACCAGGAGGACTGGATGTCAAAGCGCTCCGAGCCTTCAGGGTGCTGCGACCCCTTAGGCTGGTGTCTGGCGTTCCCAtaaaACCCATCTCTCTGctgggtgaatgtgtgtgtgtgtgtgtgtgtttgtgtgtttcagtAAAACCCATCTCTCTGctgggtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgcaggtctcCAGATTGTCTTGAACTCCATCATGAAGGCCATGGTTCCCCTACTCCACATTGGTCTGCTGGTCATGTTTGTCATCATCATCTATGCCATCATCGGCCTGGAGCTCTTCCTCGGCAGGATGCACAAGACCTGTTTCTACTTGGGCACAGAACTGAACGTGGATGATGACCCCACACCGTGTGCGTTTGCTGGAAATGGGCGCGATTGTGTGGGCAATGGGACAGAGTGCAGAGGACCGTGGGAGGGGCCTAACGGCGGGATCACCAACTTTGACAACATCTTTTTTGCCATGTTGACTGTGTTCCAGTGTATCACCATGGAGGGCTGGACCGATGTGCTCTACTGGATGAATGATGCAATTGGCTTTGAAATACCCTGGGTGTACTTTGTCTCTCTGGTCATATTTGGCTCGTTTTTCGTACTCAACCTTGTATTGGGAGTGTTGAGCGGagaGTTCTccaaggaaagagagaaggccgTGGCTCGTGGAGAGCTGCAGGACGCCCAGAATAAGAAGCAGATGGAGGAGGATATGTGTGGTTACATGGACTGGCTCATCGAGGCCGAGGATGTGGATGAGGAAGGAAACAAACaaggaaaaaaaaactctagaccaccttcatCGTCCCCACAGAGatttTTGACAAAGCCGGTTTCTGACTCTTTCGCTCCTCATGCAacttgtctcctgtctctcactTCCCTCAGTGAACAGCTATGCCAACTGAACCACGCCTTTCGGAAGAACTGTCGTGTAGCAGTCAAATCCCAGAACTTCTACTGGCTGGTGCTTCTTCTGGTGTTTCTCAACACTGCAGCCAGTGCCTCTGAACACTACGGCCAGCCCAAGTGGCTCACTGAGATGCAGGAGCGGGCCAATAAGATCCTGTTGATGTTGTTCACGCTGGAGATGCTGTTAAAGATGTACAGTTTCGGTTTCCAGATGCACTTCATGGCTCTGTTTAACCGCTTCGACTGCTTCGTGGTGTGTGGTGGCATCCTGGAGACAGTCTTGGTAGAGTTGCAAATCATCCCTCCCATCGGCATCTCTGTGCTGCGCTGTGTCCGCCTGCTCAGGGTGTTCAAAGTGACACGGCACTGGGCAGCCCTATCAAACCTGGTCAATTCCCTGCTCAACTCCATGAAGGCTATCTGCTCCCTGCTGCTCCTGCTtttcctcttcctcatcatctTCTCCCTGCTGGGGATGCAGCTGTTTGGGGGCAAGTTCAACTTTGATGAGACTCAGATGAAGAGAAGCACATTTGACACTTTTCCCCAGGCCCTGCTCACCTGCTTCCAGATCCTTACAGGAGAGGACTGGAATGCTGTGATGTATGATGGGATCATGGCTTATGGCGGGCCAGTCTTCCCACAGATGATTGTGTGTGTCTACTTCGTCTCCCTATTTGTTGTCGGCAACTATATCCTGCTCAATGTCTTCTTGGCTATCGCTGTGGACAACTTGGCAGGTGGCGATGGTGGAAAAAAGCAAGTAGAAGAGAAAAAGGATGATGAAGAGGACTGGGACGAAGATGAAGACAAAGAGGAAGATGCGGCGGTATGTACCGAATGATCTGATCAACTCCCCTCTCTAGGAATCATGCCTGTGAAGCCTGAATCCGCTCCAAAAGAGAAGATTGAACCCATTCCAGATGGGAGCTCCTTCTTCATTCTTGGAAAAAGAAACTGcCTCCGAGTGGCCTGTCACAACCTCATCCACCACTCCTACTTCACCAACCTCATCCTCGTCTTCATCATCGCCAGTAGTATTTCTCTGGCCGCTGAGGATCCAATCAGAGCTCACTCCTTTAGGAACAACATGCTTGGCTACGCTGATTATGCGTTCACCTCCATATTCACTGTGGAAATCATACTGAAGgtGACGGTTTTTGGTGCGTTCCTTCATCCTGGTTCCTTCTGTAGGAATGCCTTCAACCTCCTGGACCTTTTGGTTGTCAGTGTGTCTCTCGCGTCCTTCTTCCTCCATTCCAGCGCTATCTCTGTGGTCAAGATTTTCAGGGTACTCAAAGTGCTCAGGCCTCTTCGAGCAATCAACAGAGCCAAGGGACTCAAGAACGTAGTGCAGTGCGTGTTTGTGGCAATCAAAACCATCGGAAACATCTTGATCGTCACAACGCTCCTCCAGTTCATGTTTGCTTGTATTGGAGTGCAGCTCTTCAAGggaagattCTACAGTTGCACCGATGAAGCTAAACACACTCCATATGAGTGCATGGGGACGTTTGTGGTGTATAAGGATGGTGATATGAATCACCctatggtgagagagaggaaatggcAAAACAGTGAATTCAACTTTGACAATGTGCTGCAGGGCATGCTGGCCCTGTTCACTGTGTCTACATTTGAAGGCTGGCCACAGCTGCTGTACAAGGCCATCGACGCCAATGCTGCGAACCACGGCCCTATCTACAACTACCGTGTGGAAATCTCCATATTCTTCATcatctacatcatcatcatcgccTTCTTCATGATGAACATCTTCGTGGGCTTCGTCATCATCACGTTCCGTGAACAGGGAGAATCGGAGTTCAAAAACTGCGAACTGAACAAAAATCAAAGACAGTGCGTGCAGTACGCTCTGAAAGCCAAGCCCATCAAGATCTACATTCCCAGAAACCCGTCCCAGCTGAAGTTCTGGAAGATCATCGCCTCCAGCCAGTTTGAGTACATCATGTTTGTCTTAATTCTTCTCAACACCCTCACCTTGGCTGTGCAGCATTATGAGCAGTCTAAAATATTCAACTCTGTGATGGACATCCTCAACTTGATCTTCACAGCCCTATTTACCATAGAGATGATCATCAAGCTACTGGCTCTCAGAACACATCAATATTTCATCGATGCCTGGAACTCCTTCGACGCTCTGATCGTTGTGGGCAGTGTGCTAGACATCGTGGTCTCGGAGCTCAGTGGAGGGGACGAGGATGTTGAAgCAATCGAGGCCGCAGCCCAAGCTGCGGCTGTAGCCGTACCCGGAGCACCGCCCGTGGCCAAGAAGGAAAGCGGAAAAGTGTCCATCACATTCTTTCGTTTGTTCCGAGTCTTGCGATTGGTCAAGCTGCTCAGCAAAGGGGAGGGCATTCGAACCCTTCTCTGGACTTTTGTCAAGTCCCTCCAGGCCTTGCCATATGTCGGTCTACTTATTGCAATGATTTTCTTCATCTACGCTGTGATCGGCATGCAGACATTTGGAAAGATTGCTATAGATGACAACTCACATATCAACAGGAACAACAACTTCCAGACCTTCTTCATGTCTGTCCTGCTGCTCTTCAGGTGTGCCACCGGAGAGCAGTGGCAGGAGATCATGTTGGCAGCGTTGCCAGGGAGACCCTGTGACCCCGAGTCAGACTTTGAGCCCGGGGATGACAACATGTGCGGCAGCAACCTGGCTTACATCTACTTCATCAGCTTCTTCATGCTCTGCGCTTTCCTGATCATTAACTTGTTCATTGCtgtcatcatggacaactttgaGTACCTGACCAGAGATTGGACCGTACTGGGTACTCATCACCTGGACGAGTTCAAACGAGTCTGGTCGGATTATGACCCAGAGGCGACGGGTCGAATCAAACATATCGATGTGGTCACTATGCTGCGCAGGATCCAACCACCCCTTGGTTTTGGCAAACTGTGCCCCCATCGTGTGGCCTGCAAGAGGCTGGTTGCTATGAACGTGCCGCTGCACAGCGACGGGACAGTCACCTTCAATGCCACCCTGTTTGCGCTGGTCAGAACCTCACTCAAGATCAAGACCGAGGGGCCTGTTGACCAGGACAACGAGGAGCTCAGGGCCATCATTAAAAAGATATGGAAGCGCACTAAGCCCAAGCTCCTTGAAGAGGTCATTCCACCCCCTAGAGGGGAAGAGGTGACTTGTGGGAAGTTCTATGCCAGCTTCCTGATCCAGGACTACTTTAAAAAGTTCCGCAAGAGGAAGGAgcgggagaggaagaagaagggaaAAGACAAGAAAGACTCACTCCAGGCAGGGCTCAGGTCACTGCAGGCACTGGCCCCAGAGTTGCATCTGGCCTTGGcaatggagggagaggatgaggagtgTGTGGAGGGAGAGTTGGATGAAGAGTTCTTCAAGAATGACAACGTTTTCGAAGATCCTGGCACCTCTGCCACAAGTACTCCATCCACCACTCACATGCCAGCTGACatagaggagggcaccaccactATCTTCATGGAGCCCTTCGTCGAGCCCACAATATCCAGCAACGTGGTCACAGAACAGCCATTGACAGTCAGCGAGAAACCAGCATCAGCTCTCTCATCCTTTGATGTAGTGATGGAACAGCCCACGAGATCTGAGGCCATCCCTCCACCAGAAGACATACCAGCCCCGCCCCAACCAGCCCCAGCCGCATCACCACCAAAAGATCCATCCCCTCCCCAACCAGCACCAGCCGCAAACCCACCAAATGCCCCATCCCAGCCTCAACCAGCCCCAGTTGCATCCTCACCAAATGTTGCTTCTCCACCACAGGTGGTTACTCAATCCCCGCCTCAAATAGTGTTAGCCCCACCAGAACCAGAGGCACCTCAAATAGTTTTAGAGGCAGCCCCTGCCCCACCTCAACCAGAGCCattgatggagggaagaggaagtgAAACTTCCACTACACAGCAGGTGTACTACCCACAGTACCCAGTGAGCATGCCAACAAACAACGGGCATGTGTATCAAGAGCAACCTGTAGCATCCCCTATCCAGTCAGAGTACATGCAGAGTCCTACTCCTAACTTCACCAATGGGAGAGCTGCAGGAGTGCCCTACGCCAATGGAAATGGCATGAATGGGAACGTCTCCAATGGCGGTACGAATGGAGGTAGTGTGAATGGAGGTAGCATTACCGGAAGTAGCATGAGTGGCTACAATGGCAACGGTTACAACGGAAATGGATACAATGGAAACGGCTACAACGGAAACGGCTACAATGGAAACGGCTACAATGGAAACGGTAACGGATTGGAGCAGTATGTCCGGAGACGTGTTCTTCCTCCCACTCCTGCAGGTCGCAAGCCGCCCTCCTTTAACATCCAGTGTCTGAGGGCACAGCATAGCGCGGATGACATCCCCATCCCTGGCACGTACGAGAGTAACTCGCCCCCATGCAGATCCAGACTGaACCTTGACTCCCGCCGCAGCAGTGCCTCCTCCATGTCCTCTGCTTCCTGGGCCAACAACGGAGGAGGACATGCAGGGTCGATGCCAGGAGCAGGGGTGTCGGCAGCATCATCAGCAGCAGCGAAGAGAGGGCGTCTGCTCTACGCCCCTCTGATGCTGGTGGATGAGGCCAGGGGCACCAAGCAGGTGTGGGGAGACAGGACCCAGGCCACCTCCAGCCTCCCTGCTATTGCAACCAGGCCCAGTGGCTGGTACCCTGGAGCCCCGACACTCCCTGTGCCCACCCCTCAGAACAGGAGCTACACCAATGGCAGGGTGCCCTCCCAGATCAGCCAGAGCCTCATAGAGAAGGGCAGTGCAGACAGCCTGGTGGAGTCGATCCTGATATCGGAAGGCTTGGGCCTCTATGCAAGAGACCCAAAGTTTGTGAACTTCGCCAAGCGAGAGATCGCGGACGCATGTAACATGACCATTGATGAGATGGAGAACGCAGCCACAGACCTGCTGACCCGTTCGGCAGGCCAGCCAATAGGACGCTTCGAGGAGGAGCTGGCTGACGAGATGAACTGTGTGATTTCCTACTGAGactagagagaggaaacagagagga
>TU1577381
CTGACTACAGCAGATCGTTAGCAACCTGCAGAGTGTGTGGGAACGAGTTTATTACTATTATTTGGACATTTTTATCTGTGCTTACATGGTAAAGAAAAATGTTGCCGCATTGGAgcaataaataaaaatatcagATTTCATGAGTAATTGCTGTAGAAATAATTCGACAAGGATGGACCCAATTATCGGTGTGGAGCACTGACACGGATTGTGAAATGGCTTGCTAACTCTCCATACGTTTTTTGTTTTCCAATACGCGGTGCACAGCCAATTTCAACATTGGTTGTCAGTCAAACTCTGCAACTTGCAAAACTATTTGATGGTGGCTCTTTCCCTGAAGCTGAAGGCATATCGTGGTTTTGAACTGCGACATGGCAGGAAAAGagGATGGCGTCTCCTTGGCCGGCTCGGTTGCCGGGGACAAGTCCGACATCCTCGGCTCTGCTGCCTCGGGCAAGAAGAGGGGTGGTGGACAGAAGAAGCAGATACAAGCCAACAAATCTGCTCTCCGAGCCCCTCGAGCCCTCTGCTGCCTCACCCTCAGTAACCCCATCCGCATGGCTGCCTTAGCCCTTGTTGAATGGAAATATCCTTCAATGATGatgtacctctgtgtgtgtgtgagtgtgtgtgtgtgtgcgcgcgtcagAGCATTTAAACCCCC

Function

NR:

description
LOW QUALITY PROTEIN: voltage-dependent L-type calcium channel subunit alpha-1F-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945777.1 False 6562 mRNA 0.52 44 46724969 46761095
TU1577381 True 664 TUCP 0.48 2 46759287 46761466

Neighbor

gene id symbol gene type direction distance location
LOC110492768 LOC100380661 coding downstream 2369 46706224 ~ 46722600 (-)
LOC110492767 LOC106572444 coding downstream 56207 46657459 ~ 46668762 (-)
LOC110491075 LOC106567229 coding downstream 70063 46611209 ~ 46654906 (-)
LOC110492766 f110a coding downstream 113994 46606710 ~ 46610975 (-)
LOC110492764 fkb1a coding downstream 123278 46598697 ~ 46601691 (-)
LOC110492770 LOC106567233 coding upstream 2707 46763802 ~ 46765835 (-)
LOC110492773 timm17b coding upstream 4775 46765870 ~ 46770549 (-)
LOC110492774 LOC106567235 coding upstream 16575 46777670 ~ 46795835 (-)
LOC110492777 LOC106567238 coding upstream 184146 46945241 ~ 46974583 (-)
LOC110492780 NA coding upstream 252490 47013585 ~ 47015061 (-)
G1380895 NA non-coding downstream 121964 46602115 ~ 46603005 (-)
G1380817 NA non-coding downstream 176171 46487150 ~ 46548798 (-)
LOC110492758 LOC106567225 non-coding downstream 194544 46524093 ~ 46531221 (-)
G1380768 NA non-coding downstream 207597 46440060 ~ 46517372 (-)
G1380786 NA non-coding downstream 304528 46420167 ~ 46420441 (-)
G1380965 NA non-coding upstream 15098 46776193 ~ 46776427 (-)
G1380966 NA non-coding upstream 15619 46776714 ~ 46776950 (-)
G1381021 NA non-coding upstream 102402 46863497 ~ 46868956 (-)
G1381025 NA non-coding upstream 102630 46863725 ~ 46868712 (-)
G1380994 NA non-coding upstream 145539 46906634 ~ 46916918 (-)
LOC110492748 ppdpf other downstream 305091 46416560 ~ 46419996 (-)
G1380431 NA other downstream 1019516 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 1097271 45613938 ~ 45627786 (-)
G1381036 NA other upstream 117516 46878611 ~ 46879146 (-)
LOC110492137 LOC106567248 other upstream 326074 47081938 ~ 47089563 (-)
LOC110492148 LOC106567259 other upstream 664217 47409235 ~ 47908274 (-)
G1382721 NA other upstream 1182284 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 1521118 48282213 ~ 48312958 (-)

Expression


Co-expression Network