LOC110492774 (LOC106567235)


Basic Information

Item Value
gene id LOC110492774
gene name LOC106567235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46777670 ~ 46795835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567254.2
gGGACGTCCCAAGCATCCCATATAGCATTTGCCTTGCAAACATGGCGGCCTCTCAACAGGAGCAAAACAGCAGGAACGTTCCTGTTGATGCATCCACATCtaatgcacatcaacaacaaggAGAGAGGAAATCAGGGGCTATATCTTTTGGTTTTAGCAAAACTGTAAGTAAATTAAAATCTAGTCGGGATGAAGCTATCAACGCAGATGAGCGAGATTATTTAACCGGAGTCGATGGGAAAGAATTGCTAAgTATCAAGCCTGTGGAGAAGCCGAAGGAGCTGATCATTCCACTCATCCAAAGGAATCGCTGGTGCAGCAGGCAGGAAAACAGAGCTGGCCAGGTCCAGGGGCACGGTGATGGAGGGGGGGATAAGGCCAAAACACAACCCCCCTCTCAGGAGCAGGACTCTGTGGAATCACAGGCTGTCAAAGAAATTATTGAagAATCTCAGAGGCAGCTTGACCAGTGGAAAAATGGGGACCAAGCAGACCCCAACCTCACCATCCCCCTGCTGATGCAGAACCAGGCTCCACAGGGGTTTGAGGATGGAGACCACATCAAGGTGGACCTGCGACCAGAGTCTTCCACAGAGGCAGACTATGACAGTGTTCCTGTGGAGGTGTACGGGTTAGCCATGCTGAAGGGGATGGGCTGGAAGGCCGGAGAGGGCATCGGGCGGACCTTCAAACAGGATGTGAAGCCTATAGAGCATCAGCTGAGGCCGAAGGGTCTGGGTCTGGGAGCTGACCGCTCTGCTATACGGGACCTGGAGCCCAGTGGGCCCCGGAGGCCTCCCAAGCCAGGTGATGAGCGGAAGGATGAGACCCTGGTCCTGGGGCCTGGAGGCCATGTGCTGGTGGAGTCTGGAGCACACAAGGACCTGTACGGGAAGATTGAAGGAGTTGATCCGGACAATGCACGAGTAGTGGTCAAGCTTGCGATTGGTAGCAAGACTGTGACAATCAGTCAATATGCACTGAAACTGGTTGACCGCACAGAATATGACAAAAACGGCAAAGACCTCAGTCGCCTCAGCAGGGCCCACAAAgacaaggagaaagagaaggagcggCAGAGacgggaggagaaagagaggaggagtaataaggaagaggagaggaagaaaagtAGATCTTCTGAGAgggacagggatggagggaaggaccaGAGGAAAAGGAAACACCGGGATTCTAGTCAGGACAGAGAGAAGCCCCAGGCAAAGCTACCTCCTGCTGCCCCCTCCTGGCTCCAGAGGGACCTGAAAGTTCGCTTTGTAGATAAAGCCTTCAAAGGGGGAAAATACTACAATTCAAAGATGCGAATAGAGGATGTCTTGTCGCCAAACATCTGTGTGTGTCGTACTGAGGAGGGCAGATTCTTAGATGATGTGAAACAGACGATGCTGGAGACCATTGTGCCAAAGACCGACTCTGAGGACATCATGGTTGTACTTGGCGAACACAGGGGGCAGATAGGTCGTATTCTCCAGAGGGACCGAGACAGGAGCAGAGCCATGGTGCAGCTGGACAGATATGAGGAGAAAGTCTTCACCCTGGACTATGACTCCATCTGCCATTACGTAGGAGGGGGAGATCACTGACACCCTCTGCTTTTACCATATAACTAGTGATGTACTGTTAAAATATTGGTGGGGGAATAAAGTAACTCTCCCTATACGTTCAATGCATTTTTCCCCACATTAGGTGGGTAAACGCTTGCGCAAAATTAAGAAGTTGCGTAAACCGCAAGAGCGTTTATCCTCCACTTCAACACTGATCTCAACCTGCCCCAAACATGTCGTTTTCATTTTACAAAGTTTGGTCATAAAATGCAAgagtgtgtatgtacagtgagTAACTTTTGTCAGTGTATCTTTGTAATAAAATCATGTCAACAGCAAA

Function

NR:

description
G patch domain and KOW motifs-containing protein-like

GO: NA

KEGG:

id description
K13101 GPKOW; G patch domain and KOW motifs-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567254.2 True 1905 mRNA 0.50 11 46777670 46795835

Neighbor

gene id symbol gene type direction distance location
LOC110492773 timm17b coding downstream 7121 46765870 ~ 46770549 (-)
LOC110492770 LOC106567233 coding downstream 11835 46763802 ~ 46765835 (-)
LOC110491077 LOC106567232 coding downstream 16575 46724969 ~ 46761466 (-)
LOC110492768 LOC100380661 coding downstream 55070 46706224 ~ 46722600 (-)
LOC110492767 LOC106572444 coding downstream 108908 46657459 ~ 46668762 (-)
LOC110492777 LOC106567238 coding upstream 149406 46945241 ~ 46974583 (-)
LOC110492780 NA coding upstream 217750 47013585 ~ 47015061 (-)
LOC110492783 LOC106567244 coding upstream 233722 47029557 ~ 47034701 (-)
LOC110492784 NA coding upstream 244753 47040588 ~ 47042845 (-)
LOC110492137 LOC106567248 coding upstream 286103 47081938 ~ 47089563 (-)
G1380966 NA non-coding downstream 720 46776714 ~ 46776950 (-)
G1380965 NA non-coding downstream 1243 46776193 ~ 46776427 (-)
G1380895 NA non-coding downstream 174665 46602115 ~ 46603005 (-)
G1380817 NA non-coding downstream 228872 46487150 ~ 46548798 (-)
LOC110492758 LOC106567225 non-coding downstream 247245 46524093 ~ 46531221 (-)
G1381021 NA non-coding upstream 67662 46863497 ~ 46868956 (-)
G1381025 NA non-coding upstream 67890 46863725 ~ 46868712 (-)
G1380994 NA non-coding upstream 110799 46906634 ~ 46916918 (-)
G1380997 LOC106567312 non-coding upstream 112519 46908354 ~ 46909889 (-)
G1381022 NA non-coding upstream 148182 46944017 ~ 46944970 (-)
LOC110492764 fkb1a other downstream 176295 46598697 ~ 46601691 (-)
LOC110492748 ppdpf other downstream 357792 46416560 ~ 46419996 (-)
G1380431 NA other downstream 1072217 45705110 ~ 45705453 (-)
G1381036 NA other upstream 82776 46878611 ~ 46879146 (-)
LOC110492148 LOC106567259 other upstream 629477 47409235 ~ 47908274 (-)
G1382721 NA other upstream 1147544 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 1486378 48282213 ~ 48312958 (-)

Expression


Co-expression Network