LOC110492780


Basic Information

Item Value
gene id LOC110492780
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47013585 ~ 47015061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469079.2
GCGGCTGACGGGGCTCTTTGCATTTTCCCTGCGCTCTTTCCCGAAGGGGCCCCGGCGAAGGGAGCACTCAGGTGCTGGAGCCATAAATGAGCGATCTGGACGCCACATAAGCACTGAGTTTTCTAAATAACACACAGACTTTGGACCACATCCAAAATGCCCGGAACAAAAGGTAACAAATCTGACAAGAAATCAGCTACCAAGCAACCTCAGAGTCCTAAGGAGCAACCGAAGAAAGCTGATCAGAAAGGAGATGATAACAAAAAGCAAGGAGGACAGCCGAAGGGAGAGAAGCAATAATTTCCAGGCATTTGTGAAGATGGCTCTGGAGACTCTGCTGGGATCCTGCCGTCGCAAACATGGGGGTCCTTGGGGCAGGCAAGGCTGAAAAGCagcctcccatcctctccccatctcccttggAACTGCATACAGGCCCCGTCTTGATACACAACTGTGCCTACTTGCTCTCACAAGGGCAGAAAGTGACCCAGATTTCCATCCATCAGTGACCCACTGTGTGACCTTTCTTCCCACCCTGTTTCTCCTCGCTCATTGTCTGCTCTGGATTGTAGAACTCTTAGACATGGACGGACACAAGGTCAAACCCAGCCAATGTTCCGAGCGTCCCCAGAAACTGAAACCTTGACCACTCCCAATCTTTCCCTCTTCCCAACCAAAGTTCCTTATTTTGATCAAATGTCCAAACCATTCTTGTAAATAAGCAAATAAATCATTTTTTCCTAAAACA
>TU1577574
TTTCCCGAAGGGGCCCCGGCGAAGGGAGCACTCAGGTGCTGGAGCCATAAATGAGCGATCTGGACGCCACATAAGCACTGAGTTTTCTAAATAACACACAGACTTTGGACCACATCCAAAATGCCCGGAACAAAAGGTAACAAATCTGACAAGAAATCAGCTACCAAGCAACCTCAGAGTCCTAAGGAGCAACCGAAGAAAGCTGATCAGAAAGGAGATGATAACAAAAAGCAAGGAGGACAGCCGAAGGGAGAGAAGCAATAATTTCCAGGCATTTGTGAAGATGGCTCTGGAGACTCTGCTGGGATCCTGCCGTCGCAAACATGGGGGTCCTTGGGGCAGGCAAGGCTGAAAAGCagcctcccatcctctccccatctcccttggAACTGCATACAGGCCCCGTCTTGATACACAACTGTGCCTACTTGCTCTCACAAGGGCAGAAAGTGACCCAGATTTCCATCCATCAGTGACCCACTGTGTGACCTTTCTTCCCACCCTGTTTCTCCTCGCTCATTGTCTGCTCTGGATTGTAGAACTCTTAGACATGGACGGACACAAGGTCAAACCCAGCCAATGTTCCGAGCGTCCCCAGAAACTGAAACCTTGACCACTCCCAATCTTTCCCTCTTCCCAACCAAAGTTCCTTATTTTGATCAAATGTCCAAACCATTCTTGTAAATA

Function

NR:

description
PREDICTED: uncharacterized protein LOC101072313

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469079.2 False 751 mRNA 0.49 4 47013585 47015061
TU1577574 True 687 lncRNA 0.49 4 47013613 47015025

Neighbor

gene id symbol gene type direction distance location
LOC110492777 LOC106567238 coding downstream 39002 46945241 ~ 46974583 (-)
LOC110492774 LOC106567235 coding downstream 217750 46777670 ~ 46795835 (-)
LOC110492773 timm17b coding downstream 243036 46765870 ~ 46770549 (-)
LOC110492770 LOC106567233 coding downstream 247750 46763802 ~ 46765835 (-)
LOC110491077 LOC106567232 coding downstream 252490 46724969 ~ 46761466 (-)
LOC110492783 LOC106567244 coding upstream 14496 47029557 ~ 47034701 (-)
LOC110492784 NA coding upstream 25527 47040588 ~ 47042845 (-)
LOC110492137 LOC106567248 coding upstream 66877 47081938 ~ 47089563 (-)
LOC110492139 s38a3 coding upstream 74741 47089802 ~ 47103227 (-)
LOC110492147 LOC106572391 coding upstream 351171 47366232 ~ 47390987 (-)
G1381100 NA non-coding downstream 3091 47005351 ~ 47010494 (-)
G1381022 NA non-coding downstream 68615 46944017 ~ 46944970 (-)
G1380994 NA non-coding downstream 96667 46906634 ~ 46916918 (-)
G1380997 LOC106567312 non-coding downstream 103696 46908354 ~ 46909889 (-)
G1381106 NA non-coding upstream 10020 47025081 ~ 47025339 (-)
G1381112 NA non-coding upstream 29552 47044613 ~ 47044824 (-)
G1381123 NA non-coding upstream 43782 47058843 ~ 47060965 (-)
G1381233 NA non-coding upstream 196953 47212014 ~ 47212221 (-)
G1381036 NA other downstream 134439 46878611 ~ 46879146 (-)
LOC110492767 LOC106572444 other downstream 344991 46657459 ~ 46668762 (-)
LOC110492764 fkb1a other downstream 412210 46598697 ~ 46601691 (-)
LOC110492748 ppdpf other downstream 593707 46416560 ~ 46419996 (-)
LOC110492148 LOC106567259 other upstream 410251 47409235 ~ 47908274 (-)
G1382721 NA other upstream 928318 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 1267152 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 2169247 49179653 ~ 49196706 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G65746 NA non-coding NC_048565.1 CM023219.2 59327148 ~ 59327476 (-)
striped catfish (Pangasianodon hypophthalmus) G61492 LOC108267340 non-coding NC_047598.1 CM018544.1 9120761 ~ 9125308 (-)