LOC110491080 (LOC106572377)


Basic Information

Item Value
gene id LOC110491080
gene name LOC106572377
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47026122 ~ 47029192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110491080
ATGTCTTCCAGAGGGGAGAGGGagttctacctggttaaatggaAAGTTTACCCAGATCACATGAACACCTGGGTGCCGAGAAAAAAACCTGCGGTGTGTGGAGCTCCTACGTCAGTTCTGGGACGATGTCTTCCTGGAGCTGCAGAGACAGAAAAAGACTGTGGTCCCCGACCGGTTTGAACCAGAGCTCTCCTCTTACCCGGAGCACAGAGCCAGGCATAGGCAGACCCTGCAGAGGTGGGAGGCCCAGATCAACAGTGTTGGAGGCCTCACCAAACGCATCCTGGTCCTCAACCGTGTGGACCTGGAGGGCCCTCCAAAGAACTTTACCTACATCAACGGATACAAGTGGGTTGAGGGCATTTCGGTGGCAGTGGGGTGCGAGTGCACCAGCTGTTTGGAGAACCCTGTGGGCGGTTGCTGCCCAGGGGTATCGGGCCATGGCTTTTCCTACGACGAGTATGGGCAGGTGAAGGTTAAGCCTGGGGAGCCCATCTATGAGTGCAACCAGactgtcccaacagagtggtacAGAAAGGGATCCAGCATACCCTCTGCATCTTCAAAACAGACAACGGGCGTGGGTGGGGCGTACGCACCTCTGAGCATATCAAAAGGCATTCCTTCATCATGGAGTATGTCGGAGAGATCATCACtacagaggaggcagagaggcgGGGTCAGGTCTATGACAGACAGGGAGCAACGTACCTATTTGACCTGGACTATGTTGAGGATGAGTACACTGTTGACGCTGCTCGCTACGGAAACCTCTCTCACATTAATGAATATGTCTGAATAGAGCTGGTGATAAGGTTAATGTAAGATTCAGAATACATTTAGGTTGTAGATATGTGATATCTTTAAACGGGTTGCTTTgggcttcccgagtggcgcagcagtctaaggcactgcatcgcagtgttagatgcgttactacagacccgggtttatTCCCGGGCTGTGCCACAACCGTCCAtggccgggagtcccatagggcagtgcacaattagcccagcgtcgtcctggttagggaggggtttggccgggtggcttacttgtctcatcacgctctagtgactccttgtggcggaccgggcgcctgc
>TU1576401
AGTGCTGGTAATGTCTGACTGCCACTGAAAGCATCCATCTATAATTGAGCGAGAACTGCTTCCCTGTTCCAACCTCCCAGGCCTGTATATGTTTATATGTCTTCCAGAGGGGTTGGGATAAATAGAAGTCACATTTCCGTTGGACCTTGTGTACAATTGGCCaaataaagtgatcttagaagatGTCTACTTTGTCATAGGGGCACCAGAGTTCAGTCTGACTCCTTGTCAGCGGCTGTTTTTTTTCCTAGGAGAGGGagttctacctggttaaatggaAAGTTTACCCAGATCACATGAACACCTGGGTGCCGAGAAAAAAACCTGCGGTGTGTGGAGCTCCTACGTCAGTTCTGGGACGATGTCTTCCTGGAGCTGCAGAGACAGAAAAAGACTGTGGTCCCCGACCGGTTTGAACCAGAGCTCTCCTCTTACCCGGAGCACAGAGCCAGGCATAGGCAGACCCTGCAGAGGTGGGAGGCCCAGATCAACAGTGTTGGAGGCCTCACCAAACGCATCCTGGTCCTCAACCGTGTGGACCTGGAGGGCCCTCCAAAGAACTTTACCTACATCAACGGATACAAGTGGGTTGAGGGCATTTCGGTGGCAGTGGGGTGCGAGTGCACCAGCTGTTTGGAGAACCCTGTGGGCGGTTGCTGCCCAGGGGTATCGGGCCATGGCTTTTCCTACGACGAGTATGGGCAGGTGAAGGTTAAGCCTGGGGAGCCCATCTATGAGTGCAACCAGactgtcccaacagagtggtacAGAAAGGGATCCAGCATACCCTCTGCATCTTCAAAACAGACAACGGGCGTGGGTGGGGCGTACGCACCTCTGAGCATATCAAAAGGCATTCCTTCATCATGGAGTATGTCGGAGAGATCATCACtacagaggaggcagagaggcgGGGTCAGGTCTATGACAGACAGGGAGCAACGTACCTATTTGACCTGGACTATGTTGAGGATGAGTACACTGTTGACGCTGCTCGCTACGGAAACCTCTCTCACATTAATGAATATGTCTGAATAGAGCTGGTGATAAGGTTAATGTAAGATTCAGAATACATTTAGGTTGTAGATATGTGATATCTTTAAACGGGTTGCTTTgggcttcccgagtggcgcagcagtctaaggcactgcatcgcagtgttagatgcgttactacagacccgggtttatTCCCGGGCTGTGCCACAACCGTCCAtggccgggagtcccatagggcagtgcacaattagcccagcgtcgtcctggttagggaggggtttggccgggtggcttacttgtctcatcacgctctagtgactccttgtggcggaccgggcgcctgcaggctgaccccggtcgctagttgaacggtgtttcctccgacacattggtgcggctggcttccgggttaagctggcgggtgttaaggagTGAGGTTAggcatgtttcggaggacgcctGACTCCacattcgcctctcccgagcccattggggagttgcagcgataagacaagatcgaaattggggagagggggggttgaTTCAATAGATGTGGAGAGAACTAAGATGGACTCCAATTTCAGTATGACTGaatcacctaaaaaggcccacaTGTCTGgatcacctaaaaaggcccacaTGTCTGgatcacctaaaaaggcccacaTGTCTGGATCACCTAAAAAGACCCACATGTCTGTATCACCTAAAAAGTCCCACATGTCTGgatcacctaaaaaggcccacaTGTCTGGATCACCTAAAAAGACCCACATGTCTGGATCACCTAAAAAGGCCAACATGTCTGtatcacctaaaaaggcccacaTGTCTGtatcacctaaaaaggcccacaTGTCTGtatcacctaaaaaggcccacaTGTCTGtatcacctaaaaaggcccacaTGTCTGTATCACCTAAAAAGCGTGTGCGCATGGAGTGCAAGTGCGAGAAGGACAATTGCAAGGGGTACTTGTTTTAGGGGCGCGACAAAGACTAACAATAAACTTGATTTTGTTCCAGTAGTGCCATCGTGACAATTAAACTTTATTTCTGGCATTTTAAATGGACAATGTAAATATTTGGTGTGTTTTAATATTCAACCCTATTTCATCAAACACAGGTTTGTAACCTGTTTGCAGTTTTTCTTACAGTTATTTGGTTTTAATATACAACACTAGAATCAAATTGTGTGCCATATTTAAATAACATAAACACTGTCTACCATGAGTGTACagagccttgcaaaagtattcatcccccttggcgttttccctactttgttgcattacaacctgtaatttaaacggatttctatttttatttcatgtaatggacagacacaaaatagtctaaattggtgaagtgaaatagaaGGAataatggatggcgctaaatacagggaaattcttgagggaaacccgtttcagtcttccagagatttgagactgggaaagaagttcaccttccagcaggacaatgacactaaacatactgctgaagcaacacttgagtggtttaaaggGGAAacttttaaatgtcttggaatggcctagtcaaagaccagacctcaatccaattgagaatctgtggtaagacttaaagattgctgtacaccagcggaacccatccaacttgaaagagctggagcagtttggcttgaagaatgggcaaaaatcccagtggctagatgtgccaagcttatagagacatatcccaagaga

Function

NR:

description
histone-lysine N-methyltransferase SUV39H1-like isoform X1

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110491080 False 1106 mRNA 0.54 4 47026218 47027807
TU1576401 True 2727 TUCP 0.47 3 47026122 47029192

Neighbor

gene id symbol gene type direction distance location
LOC110492781 LOC106572373 coding upstream 2156 47016989 ~ 47024062 (+)
LOC110492779 LOC106567241 coding upstream 12919 46999728 ~ 47013299 (+)
LOC110492778 LOC106567239 coding upstream 27929 46995017 ~ 46998289 (+)
LOC118939461 NA coding upstream 82135 46942434 ~ 46944997 (+)
LOC110492776 LOC106567237 coding upstream 83770 46923447 ~ 46942448 (+)
LOC110492785 LOC106567245 coding downstream 21363 47049170 ~ 47060968 (+)
LOC110492136 LOC106567247 coding downstream 40184 47067991 ~ 47082677 (+)
LOC110492138 LOC106567249 coding downstream 77827 47105634 ~ 47131419 (+)
LOC110492140 LOC106567250 coding downstream 113895 47141702 ~ 47158067 (+)
LOC110492141 LOC106567251 coding downstream 130710 47158517 ~ 47283905 (+)
G1380011 NA non-coding upstream 33179 46992759 ~ 46993039 (+)
G1379986 NA non-coding upstream 103783 46922155 ~ 46922435 (+)
G1379977 NA non-coding upstream 134476 46891082 ~ 46891742 (+)
G1379963 NA non-coding upstream 157500 46863719 ~ 46868718 (+)
G1380023 LOC106567244 non-coding downstream 1789 47029596 ~ 47032063 (+)
G1380027 NA non-coding downstream 8419 47036226 ~ 47037545 (+)
G1380051 NA non-coding downstream 57161 47084968 ~ 47085413 (+)
G1380046 NA non-coding downstream 58066 47085873 ~ 47086664 (+)
G1380077 NA non-coding downstream 99331 47127138 ~ 47127775 (+)
G1379959 LOC106567238 other upstream 78001 46945257 ~ 46948217 (+)
G1379941 NA other upstream 160952 46820495 ~ 46865266 (+)
tuba5 LOC106572477 other upstream 833489 46185921 ~ 46193971 (+)
G1379272 NA other upstream 1318769 45705739 ~ 45707449 (+)
G1377698 NA other upstream 2845043 44144188 ~ 44181175 (+)
LOC110492164 mitf other downstream 1254403 48282132 ~ 48331926 (+)
LOC110492179 NA other downstream 1997124 49024001 ~ 49034167 (+)
LOC110492182 LOC106566913 other downstream 2217775 49202107 ~ 49258042 (+)
LOC110492210 LOC106566890 other downstream 3462491 50490237 ~ 50796195 (+)
G1384247 NA other downstream 3544885 50572692 ~ 50573050 (+)
G1379962 NA non-coding upstream 113934 46863532 ~ 46912188 (+)

Expression


Co-expression Network