LOC110492783 (LOC106567244)


Basic Information

Item Value
gene id LOC110492783
gene name LOC106567244
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47029557 ~ 47034701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567264.2
atagtaacacaataaaataacaataacgaggctatgtaaAAGGAGCAAGGGTACCGAGTGGAATAGAACTGATGAACCCCGCGAACAGGCGAACAGCATCCACGAAGGCAGACGCAGCCATTTAATTGAGATTACTTTAAAATCATTCATTTAAACATCCAAACGTTTTTATTTTGACGTTTGTCGACTAGACATGCGATATGAatgtacatttttgtcattttcaATAGCCTATGACAAATCAAATGCGCTCCCATCGTCCGCCAGGCAGACACATGCAATGTGGACCTTCACCGGACAACAACACAGACTGGCTGCAAATTACTGGGTGCTGAATGTAATGGAGAAAGGACAAATGAGTCTGTTATGTTGAAAGGATCCTCAGAGCTCCCTGTAAGTGGGACAGAGACATCCACCAGGACGGACGGGAGGAGGGCTGCCTGAGGCGGAAGAGTGGCgtcggtcagagagagagaaggggtagaatCACCCTAGCACCCCGCCCCTAGAATCCCAGAGCTGGAGGCATGTCTAACCAGACCCAGATCTTTGGCATTGATGGACCAGGCAGCCTGCTGGCAGTGTTGGCTTCACAGAGGGCCAGCAGCATCAGCACCAGCAGCAGTGAAGGAATCTCGGCTGCAGCTGTGTCCGCCTACATCAAGCTGGTGTTCCTGGGCCTGATCCTCTGTGTTAGCCTGGTGGGCAACCTGCTGGTGTCTCTGCTGGTCCTCCGAGACCGGGCCCTCCACAAGGCCCCCTACTTCTTCCTGCTGGACCTGTGCCTGGCTGATGTTGTCCGCTCTGCCGCCTGCTTCCCCTTCGTCCTAGTGTCTGTCCACAACAGCTCCGCGTGGACCTACAGCACCTTCAGCTGCAAGGTGGTGGCTTTCCTGGCTGTGCTCTTTTGTTTTCACGCTGCCTTCATGCTGTTCTGTGTGGCTGTGACTCGCTACCTGGCCATTGCCCATCACCGTTTTTATACCAAGCGCATGACAGTCTGGACCTGCGCTGCCATCATCTGCATGGTGTGGACTCTGGCCATCGCCATGGCATCGCCACCCGTCTTTGACGTGGGGACGTACAAGTTCATTCAAGATGAGGACCAGTGCATTTTCGAGCACCGCTACCTTAAGACCAATGACACTCTGGGCTTCATGCTCATGCTGGCCGTCGTGGTCCTGGCCACTCACGGTTTCTATGCCAAACTCCTGCTGTTTGAATACAAGCACCGCAAGATGAAGCCTGTCCAGCTAGTGCCGGCCATCAGCCAGAACTGGACCTTTCATGGACCAGGAGCCACGGGCCAGGCAGCAGCCAACTGGATCGCAGGCTTCGGCCGGGGCCCAATGCCCCCCACCCTGCTTGGGATCAGGCAGACTTTGCACAACCAGCAGCACCGGCGTCTGATGGgcatggaggaggtgaggacgGAAAGGAGGCTGGGCAGGATGTTTTACATCGTCACCCTGTTGTTCTTGGTGCTCTGGGCTCCCTACATAATGGCCTGCTTCTGGAGGGTGTTTGTCAAGTCCTGCTCCATCCCACACAGGTACCTCTCCATCACAGTGTGGATGAGCTTCGCCCAGGCAGGGGTCAACCCTATCATCTGCCTCCTACTCAATGAGGACTTGAGGAAAGTGCTAAGGGCCCACCTGCCCACCTACAGCAGGACTAGACAACACCAACAGCTGCACCGCCATGAGCTGTTGGTGTTCACCATCACATGATGCACTactgcaggggtgtcaaacatacggcccgtgggggggggggtccaatcCAATTCCAATGTACAATGTATTTTtagaaaaaacattttttgaggGGAAACAAActcaatatactttaaaatgactaaaaccatatcaaaactgtgtagaaattataatggGCCTACATTCATAAGGTTTCTTGACTGGGTCCAGTTATCACcgaaatgaaagctagacagtcagggagcatcgggaaaaaaaaaaaatatatggataGACTATTTTGACGCAGAGGAAATATAAACAATTTTCAGTGCGGCCCTCTGTACCTCGTTGAAGACCGAATGCGGCCCCTGGGGCAAaattagtttgacacccctgctctactgcATCGAGTGATGGTGGTGGGATCGGTGTGTTTTGTTTGTATTATACTGAAATGGCTAtctgactttttttttttgtaaagatAATGTTTATCAGATGCTACTATTTTTGCAAATGAATTATGACTTTGTTTCATATGTAATGTACATATCGTGTGTACATGCAGTATGAGAAGCAGGTTTGTAGTAATACTTGGTCATTAACATTATCCATAGATTCTCATTTATATGGCTGAAAATGTCAAAACTATTAACAGTGATTTTCTCTAGCTCAATGGAGGGGGTTGCAACGGTCACCAAAAAAAAGCAAAGCATAGGTTATCATCAGCTGCATATGGATAATGCATCTAGATTGGAGAGAATCCCAATAGGACCCAATATAACCCGGGCACAAGTTTGTGCCTTCTATATTCCAAATTATCATACAAATCTAATGACATTCACTAACTTAAACAAGAGTAATGTTTGGAATTCAGTGCCAATGATTTGACTTAAATATGTTGGAACATTCCCTTGTTCAAAGACAACACTTTCTCAAGGTAGAGAGCAACAAAGTAGCATGCTTTCCAACATTTTTTTATGGTTCCCAGACTGAAGTTTGCAAATGTTTGACATTGAAAAACCAACTGAGAAGTGAAATGGGGTTTAAAAATATTAAAGGGGTATGGCTTTGTTTTCTAAAATATCCTGTTGTACAGTATTTAAGGGgattgttttttcccccaactCACCAATAAAGTCTACTTTTGATGCATTTTGA

Function

NR:

description
PREDICTED: probable G-protein coupled receptor 173

GO: NA

KEGG:

id description
K04300 SREB3, GPR173; super conserved receptor expressed in brain 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567264.2 True 2861 mRNA 0.47 2 47029557 47034701

Neighbor

gene id symbol gene type direction distance location
LOC110492780 NA coding downstream 14496 47013585 ~ 47015061 (-)
LOC110492777 LOC106567238 coding downstream 54974 46945241 ~ 46974583 (-)
LOC110492774 LOC106567235 coding downstream 233722 46777670 ~ 46795835 (-)
LOC110492773 timm17b coding downstream 259008 46765870 ~ 46770549 (-)
LOC110492770 LOC106567233 coding downstream 263722 46763802 ~ 46765835 (-)
LOC110492784 NA coding upstream 5887 47040588 ~ 47042845 (-)
LOC110492137 LOC106567248 coding upstream 47237 47081938 ~ 47089563 (-)
LOC110492139 s38a3 coding upstream 55101 47089802 ~ 47103227 (-)
LOC110492147 LOC106572391 coding upstream 331531 47366232 ~ 47390987 (-)
LOC110492148 LOC106567259 coding upstream 374534 47409235 ~ 47908274 (-)
G1381106 NA non-coding downstream 4218 47025081 ~ 47025339 (-)
G1381100 NA non-coding downstream 19063 47005351 ~ 47010494 (-)
G1381022 NA non-coding downstream 84587 46944017 ~ 46944970 (-)
G1381112 NA non-coding upstream 9912 47044613 ~ 47044824 (-)
G1381123 NA non-coding upstream 24142 47058843 ~ 47060965 (-)
G1381233 NA non-coding upstream 177313 47212014 ~ 47212221 (-)
G1381236 NA non-coding upstream 180686 47215387 ~ 47215591 (-)
G1381036 NA other downstream 150411 46878611 ~ 46879146 (-)
LOC110491077 LOC106567232 other downstream 268091 46724969 ~ 46761466 (-)
LOC110492767 LOC106572444 other downstream 360963 46657459 ~ 46668762 (-)
LOC110492764 fkb1a other downstream 428182 46598697 ~ 46601691 (-)
LOC110492748 ppdpf other downstream 609679 46416560 ~ 46419996 (-)
G1382721 NA other upstream 908678 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 1247512 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 2149607 49179653 ~ 49196706 (-)

Expression


Co-expression Network