LOC110492137 (LOC106567248)


Basic Information

Item Value
gene id LOC110492137
gene name LOC106567248
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47081938 ~ 47089563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947052.1
AGTCTTTGTGTGCATTTAACACATTGTAGAAGGCAGAAGAGAAACCGCCTGCGTCATTTCAACTTGTTAGTGCCTGTTTGAGGAAGAGGACAGCCAGGCACATCAATGATCAGCTCCTCTTTGGTACTAGGTGGATATTCTGAGAGGGAACTATGAGTCTGGGATCTAAGTCTAAAGGAGTTCAGGGGTACAGTCCCAGCTCTCTGCTGAGCCCACAGGAGAATGAGAGGCTGGAGGACCTCCTGGGGAGGAGGTGTGCTtccCTGGCCACGGCTGTGGTGCAGCTGTATATGGCCCTGCCACATAGTCCCACCTGCTGGAGCCTGCAGCACACTGGGGTGGCCTGCTTCACCAAGGACAACCCTCGTCGCTCCTACTTCATACGCCTCTTCGATGTCAAGAAAGGACAGCTGACCTGGGAGCAGGAGCTCTATAACCAAATGATCTACCACAGCCCCCGACCCTTCTTCCACGCATTTGCTGCAGATGACTGCCAAGTGGGGCTGAACTTTGTGAATGAACAAGAGTCTGAAACATTCCTATGTGCAGTGGAAGACAAGATAAACCAGAGAAACCGTCAAGTCTCAGAGAAGAAGCAGCGCCCCCTGCCTTCCAATGACAGAGGTAAAGGACCTGGGAGTCCCGCTTCTCCCTCTGTGGCAACCATAGACATCCAGATCCCAGACATCCAGGCTTCACGCTACCGCTCCGTCACACCTGTGCCTGCTCCTGCCtttgtcagtaaggggaaaaagGACAAGAAGAAGGACAAGAGGAAGGGCAGTAAACTCTCCAAAGCAGACATTGGAGCACCCAGTGGGTTTAAACACGTGAGCCATGTGGGCTGGGATCCCAACAACCTGGACCCTGACCTGAAGAAGCTGCTGTCCTGTGCTGGGATCAGTGAGGCTGAGCTGAAGGATGAGGAGACCTCCCAACTCATCCAACAAGTCATCGAGAACTCAGGCGGCATGGAAGCAGTCAAAAAGGCCATGCACACTGATCCTGAGCTTCCTCCTGGTAGACAGGGTTCTCTACCTCCCGTACCAGGcagctgttcctcctctcctgccccccctcctccacgGGGGGGTCGCTCCGGCCCCCTGCCCCCTCCCCCAGGACAGCCAGGGCGAGGACCACCCCCCTCCCATCCCCCTCCATCACGTGGAGCCTTGCCACCTCCACCCCCCTCAAGCGGCCAAGGCGGACTCCCACCCCCTCCACCCACTGTGTCCTATACTTCTCCTCCCCCTGGCCACCAGCGCTCCATGcctgcccctcctcctccacctcctccaccgcCTCCCCCAGCCCAGAGCACTGGAGACTTTCCTTTTCCTCCACACCCCTATAAAGGTCACCCATCACCTGCTCCTGCATCTACAGGAGGATGTgaaggaggtggaagaggagctCTGCTGGACCAGATCCGCCTGGGGAGGAAGCTCAAAAACGTCACAGACAGTCCTGAGTCACCTCCGCCTGCTGAGACAGACTCAGAGGGCATCGTAGGAGCTCTGATGATGGTCATGCAGAAGAGGAGTAAAGTCATCCACTCCTCTGATGaaggtgaagaagaaggaggttatgatgatgaagatgacgaTGAGTGGGACGACTGATAAGTGCATTCCATCCTGTATTATTTTCCACTCTGTAACCATGGACTCAACAGTCTGGTTGATCCGGTTAATCTCTTTTGTGTTGGTGTTTTTGTATCAGTTGCTGACTGGAAGGTGACTCACGAAGATTTACATCAGAAGAATGCTACAGATAAGGATTGTGTGAAAGTCCCAAATGTGAGAGAAATCAACGGAACGTAAGACAGAGAAACGATTGATGGGATCACATATCTTTATATTTGCCGTTCAAACGTTTCCAGTGTAGGACTCATGCTGAGTATGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTGCTGTACTACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTGCTGTACTACACATTACAGTATGTTGCTGTACTAGACATTACAGCATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTGCAGTATGTTGCTGTACTACACATTGCAGTATGTTGCTCAATATCATTAGAACATATGGTGAGGTCTTCTTCACAGTCTTCTTTATACCTGTTCCCATTAAAAGTGACAATTTGATATGGCTGGAATGTAGTATTATAATGTAATACAGAGATTATGCACA
>XM_036947053.1
AGTCTTTGTGTGCATTTAACACATTGTAGAAGGCAGAAGAGAAACCGCCTGCGTCATTTCAACTTGTTAGTGCCTGTTTGAGGAAGAGGACAGCCAGGCACATCAATGATCAGCTCCTCTTTGGTACTAGGTGGATATTCTGAGAGGGAACTATGAGTCTGGGATCTAAGTCTAAAGGAGTTCAGGGGTACAGTCCCAGCTCTCTGCTGAGCCCACAGGAGAATGAGAGGCTGGAGGACCTCCTGGGGAGGAGGTGTGCTtccCTGGCCACGGCTGTGGTGCAGCTGTATATGGCCCTGCCACATAGTCCCACCTGCTGGAGCCTGCAGCACACTGGGGTGGCCTGCTTCACCAAGGACAACCCTCGTCGCTCCTACTTCATACGCCTCTTCGATGTCAAGAAAGGACAGCTGACCTGGGAGCAGGAGCTCTATAACCAAATGATCTACCACAGCCCCCGACCCTTCTTCCACGCATTTGCTGCAGATGACTGCCAAGTGGGGCTGAACTTTGTGAATGAACAAGAGTCTGAAACATTCCTATGTGCAGTGGAAGACAAGATAAACCAGAGAAACCGTCAAGTCTCAGAGAAGAAGCAGCGCCCCCTGCCTTCCAATGGACCTGGGAGTCCCGCTTCTCCCTCTGTGGCAACCATAGACATCCAGATCCCAGACATCCAGGCTTCACGCTACCGCTCCGTCACACCTGTGCCTGCTCCTGCCtttgtcagtaaggggaaaaagGACAAGAAGAAGGACAAGAGGAAGGGCAGTAAACTCTCCAAAGCAGACATTGGAGCACCCAGTGGGTTTAAACACGTGAGCCATGTGGGCTGGGATCCCAACAACCTGGACCCTGACCTGAAGAAGCTGCTGTCCTGTGCTGGGATCAGTGAGGCTGAGCTGAAGGATGAGGAGACCTCCCAACTCATCCAACAAGTCATCGAGAACTCAGGCGGCATGGAAGCAGTCAAAAAGGCCATGCACACTGATCCTGAGCTTCCTCCTGGTAGACAGGGTTCTCTACCTCCCGTACCAGGcagctgttcctcctctcctgccccccctcctccacgGGGGGGTCGCTCCGGCCCCCTGCCCCCTCCCCCAGGACAGCCAGGGCGAGGACCACCCCCCTCCCATCCCCCTCCATCACGTGGAGCCTTGCCACCTCCACCCCCCTCAAGCGGCCAAGGCGGACTCCCACCCCCTCCACCCACTGTGTCCTATACTTCTCCTCCCCCTGGCCACCAGCGCTCCATGcctgcccctcctcctccacctcctccaccgcCTCCCCCAGCCCAGAGCACTGGAGACTTTCCTTTTCCTCCACACCCCTATAAAGGTCACCCATCACCTGCTCCTGCATCTACAGGAGGATGTgaaggaggtggaagaggagctCTGCTGGACCAGATCCGCCTGGGGAGGAAGCTCAAAAACGTCACAGACAGTCCTGAGTCACCTCCGCCTGCTGAGACAGACTCAGAGGGCATCGTAGGAGCTCTGATGATGGTCATGCAGAAGAGGAGTAAAGTCATCCACTCCTCTGATGaaggtgaagaagaaggaggttatgatgatgaagatgacgaTGAGTGGGACGACTGATAAGTGCATTCCATCCTGTATTATTTTCCACTCTGTAACCATGGACTCAACAGTCTGGTTGATCCGGTTAATCTCTTTTGTGTTGGTGTTTTTGTATCAGTTGCTGACTGGAAGGTGACTCACGAAGATTTACATCAGAAGAATGCTACAGATAAGGATTGTGTGAAAGTCCCAAATGTGAGAGAAATCAACGGAACGTAAGACAGAGAAACGATTGATGGGATCACATATCTTTATATTTGCCGTTCAAACGTTTCCAGTGTAGGACTCATGCTGAGTATGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTGCTGTACTACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTTCTGTACAACACATTACAGTATGTTGCTGTACTACACATTACAGTATGTTGCTGTACTAGACATTACAGCATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTACAGTATGTTTCTGTACTACACATTGCAGTATGTTGCTGTACTACACATTGCAGTATGTTGCTCAATATCATTAGAACATATGGTGAGGTCTTCTTCACAGTCTTCTTTATACCTGTTCCCATTAAAAGTGACAATTTGATATGGCTGGAATGTAGTATTATAATGTAATACAGAGATTATGCACA
>TU1577598
CAGAAGAGAAACCGCCTGCGTCATTTCAACTTGTTAGTGCCTGTTTGAGGAAGAGGACAGCCAGGCACATCAATGATCAGCTCCTCTTTGGTACTAGGTGGATATTCTGAGAGGGAACTATGAGTCTGGGATCTAAGTCTAAAGGAGTTCAGGGGTACAGTCCCAGCTCTCTGCTGAGCCCACAGGAGAATGAGAGGCTGGAGGACCTCCTGGGGAGGAGGTGTGCTtccCTGGCCACGGCTGTGGTGCAGCTGTATATGGCCCTGCCACATAGTCCCACCTGCTGGAGCCTGCAGCACACTGGGGTGGCCTGCTTCACCAAGGACAACCCTCGTCGCTCCTACTTCATACGCCTCTTCGATGTCAAGAAAGGACAGCTGACCTGGGAGCAGGAGCTCTATAACCAAATGATCTACCACAGCCCCCGACCCTTCTTCCACGCATTTGCTGCAGATGACTGCCAAGTGGGGCTGAACTTTGTGAATGAACAAGAGTCTGAAACATTCCTATGTGCAGTGGAAGACAAGATAAACCAGAGAAACCGTCAAGGTCAGGTCATTTGTTGTAGGATCCAGGACAGAAACATTGTGTTTTGCGTTATTTgtttgtggttgttatttgtcATATTTGATATAATACACACGACTgttcaaagtttggggtcact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947052.1 False 2579 mRNA 0.48 11 47081938 47089563
XM_036947053.1 False 2567 mRNA 0.49 10 47081938 47089563
TU1577598 True 667 TUCP 0.50 4 47087169 47089530

Neighbor

gene id symbol gene type direction distance location
LOC110492784 NA coding downstream 39093 47040588 ~ 47042845 (-)
LOC110492783 LOC106567244 coding downstream 47237 47029557 ~ 47034701 (-)
LOC110492780 NA coding downstream 66877 47013585 ~ 47015061 (-)
LOC110492777 LOC106567238 coding downstream 107355 46945241 ~ 46974583 (-)
LOC110492774 LOC106567235 coding downstream 286103 46777670 ~ 46795835 (-)
LOC110492139 s38a3 coding upstream 239 47089802 ~ 47103227 (-)
LOC110492147 LOC106572391 coding upstream 276669 47366232 ~ 47390987 (-)
LOC110492148 LOC106567259 coding upstream 319672 47409235 ~ 47908274 (-)
thap3 LOC106567262 coding upstream 828594 47918157 ~ 47927478 (-)
LOC110492153 LOC106567263 coding upstream 863855 47953418 ~ 47956955 (-)
G1381123 NA non-coding downstream 20973 47058843 ~ 47060965 (-)
G1381112 NA non-coding downstream 37114 47044613 ~ 47044824 (-)
G1381106 NA non-coding downstream 56599 47025081 ~ 47025339 (-)
G1381100 NA non-coding downstream 71444 47005351 ~ 47010494 (-)
G1381233 NA non-coding upstream 122451 47212014 ~ 47212221 (-)
G1381236 NA non-coding upstream 125824 47215387 ~ 47215591 (-)
G1381241 NA non-coding upstream 132548 47222111 ~ 47222320 (-)
G1381245 NA non-coding upstream 157592 47247155 ~ 47247489 (-)
G1381036 NA other downstream 202792 46878611 ~ 46879146 (-)
LOC110491077 LOC106567232 other downstream 320472 46724969 ~ 46761466 (-)
LOC110492767 LOC106572444 other downstream 413344 46657459 ~ 46668762 (-)
LOC110492764 fkb1a other downstream 480563 46598697 ~ 46601691 (-)
LOC110492748 ppdpf other downstream 662060 46416560 ~ 46419996 (-)
G1382721 NA other upstream 853816 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 1192650 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 2094745 49179653 ~ 49196706 (-)
LOC110491086 LOC106566907 other upstream 2513555 49576512 ~ 49719539 (-)

Expression


Co-expression Network