thap3 (LOC106567262)


Basic Information

Item Value
gene id thap3
gene name LOC106567262
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47918157 ~ 47927478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945779.1
TCAGTGACGCAATGAAAGACGGGCGCGTTGTCACAACAAAATACGTTCGGCTACATAgattgtgaaattattttgatgtaatATAAAATAGGGTTTTGTTGCTTAGAACCGTACCGTATTTGGCTGTCAGTGTCAGAGCCAATTCGCCTCTAAACAGAACATGTAGTTAACTAAGGTTCTTTGGATATAGAAGGATTAACGTTAGGCTCCTTTAGTCCATTATTGTGCTAGGGTTTACTTACGTTTTCCAGGACCGAACTTGAGTCCGAATCGTTGCGTGTTTTATATAATTGACCCCACTTTGTTATCCTCTTCATACCGAAAAAGTGGTGTACAACTAACGTTAACACGGGAGTTAGACGTCAAACGAAATACGGAAGTGAAACGATAGCACACAATTAGTACCACTTCCTTTTTAAACTACGAGGAACGAACAGGACAAAACGAAAAATAACACAACGTTGAGTTGCCTATGTAGCCGTTGGTTGTTGAGTCATTCTGGCGCAAAAGCCTCAAAGTTCCCAACAATATAGTGTCTGTCACCTGTTCTGGTGGTCCTAGTAAAATGGGTGCTTTCCAGAGCAACCGCAACATGATTGTAATCGATGCGCACTTTGGATTCTGCGCTCTCAAATCTGAAATATCATGTTTAATCAATATACTATGCTGTGCTGGGCGTACATTTTTAATCTTTGGTCTTGGAGACAAACTCATTAAATCAATACATTCTCCAAACAGAGATGGTCTAAAAGGGTACGAGATGGGACGAATAGACCTAGCATATTACGACATATGATCAGAGAcggaagaggaagcgagacatCCCACTCCCTCATTTTTTTCTGGTTCATATACATTAGACCAGACCACAGTTTATATCGCATAGCCACCCTGGAACCATGTTTTCAAGGATAATCGCttcatttatatttatattattattatatatttggTATGATGACTCTTTTGATATACTGAGGGGCGACGACCGTCGACCGCCATCTTAGTTCAGGGCAATATCATGCCGAAAAGTTGTTCTGCATATAACTGTACCAATAGGTACAGCAAACATACAGATATTACTTTTCACAGATTTCCTTTCAGCAAACCAACTGTATTTAGACAATGGCTGGATAACATATGCCGGGATGACTTTTATCCAAAAAAACATATGGTCATCTGCTCACTTCATTTTACTATGGATTGTTTCAGCGGTTTAGGCAACCGCAAAAACCTGCTGTGGAATGCTGTACCCACTCTCTTTACATTCCCACCACCAAATTCTAAGAAAAGAATGTCAGGAAAAAGGCTCAAAATGCTTCcaaagtgtgtcagtgtgtccCACGAAAAGATGGAAACACAGAATGGCCTGGACCCAGAAGAGAAACTACTATCAAAATCTGCAGAGGGCAACAAGAAAGTGAGCTTTTACCTAGCTGAGAATTCTCAACTACGCACGATACAACATGTCGTCATCTCCGATCACAGTTACTCGCTGTCCGACCCATGTGCACTGAAGGCCCAGCTATTCAAAGCCTTGGATACCAACACATGGCTCAACAGAAGGTTACAAATGAAGAGCCAGCTGATCAACAAGATGAGGTTCAAATTGAAGGCAGCACGCGCCGAGTTGTCAAGTCTACGCAGGTGGACGAATCTGTCCAGGGCTGCTGGTAAAGTATCTATATGGCCAAGTGTACAGAGGATAGCTGTGAATGATATCAGCTGACCCATTGATTGACATTGGTTTTATTGGAAAGCTATTTTGTATTGGAACACAAGGAGTTAAATTCATTTGCTGATCCTCTTCTGAAAACATAGTCTTGAAGACATACTTTTTCCAATTTCCTCTTGGTCAATGAGTGCAAAATACTTATTTGGGAAAGCTTTGCAGCCCTATCCATCTTGCTGACATCTACAAAACCATTCTTTGGATAATATAGTATATACTTTTCCCACTAGTTTAAAGGGACCTTCCTGGACTGAGTTTTTATTCCTGAATTAAAATCAATCAAGGATTAAGACACAAATGAAGTTGAAAAATATTCCATTGACATTTGCGCATGAGGGCCTTTACAAACATGAcctgaaagttttttttttttttt
>TU1579358
tattttagctcatgggaccaactctttacatattgcgttttatatttttgttcagtgtagatagagaatttgagccatattagcattgacatgaaatcagtcaaaacacctcaaaacaagacatggtatcaagaacaagatttGTCATTCTTGCTAGCAACTTGGCCATGCAGAATCACAACACACCGACTTCTGCCCCATGGAAGCGCACACATCGTTTTAGTGAAGCAAACCcatcaatagaaatgtatttgttaatgtctacatttgttttgacACATTTATTCTATAAAAGACACCTTAACACATACTTTTAAATGATATTGTTAGCttaacataaaaatataaaacattttcctttaagtatttttttatagtactaatgttactgtccccactacaacaaaacAATACTtgtaacatttaattgaaattccAGTAATTCCTATGGAGGACCGTTCTTACTGGGGAGTGCCAATTTGACTGACCGGTGGATTCAAAGCCACTCAATGGCcaagcatcagcaatccagggttaaTACACATCATTGGCCAAAACTAATTGCCACTCAACTCCATTGAGATGTGATATTATGTATATCTTGTCTTGAAGTTGAGCATTCTTAGCTAGTCTTTACCCTACCCAGTCAGTCTTCTAATACTCAACTTCTATGTGAGTCTTGTGCAACATTGTATTCTGTATGGTTTGAGACTGAGCCATAGGGTTGTTacagacatttctgcagtatCACATTGAAACTAAACACCTGCAATTATTCTTTCAGTCATAACTGATTTTCTTTATTTAGCATGTCGTCATCTCCGATCACAGTTACTCGCTGTCCGACCCATGTGCACTGAAGGCCCAGCTATTCAAAGCCTTGGATACCAACACATGGCTCAACAGAAGGTTACAAATGAAGAGCCAGCTGATCAACAAGATGAGGTTCAAATTGAAGGCAGCACGCGCCGAGTTGTCAAGTCTACGCAGGTGGACGAATCTGTCCAGGGCTGCTGGTAAAGTATCTATATGGCCAAGTGTACAGAGGATAGCTGTGAATGATATCAGCTGACCCATTGATTGACATTGGTTTTATTGGAAAGCTATTTTGTATTGGAACACAAGGAGTTAAATTCATTTGCTGATCCTCTTCTGAAAACATAGTCTTGAAGACATACTTTTTCCAATTTCCTCTTGGTCAATGAGTGCAAAATACTTATTTGGGAAAGCTTTGCAGCCCTATCCATCTTGCTGACATCTACAAAACCATTCTTTGGATAATATAGTATATACTTTTCCCACTAGTTTAAAGGGACCTTCCTGGACTGAGTTTTTATTCCTGAATTAAAATCAATCAAGGATTAAGACACAAATGAAGTTGAAAAATATTCC

Function

NR:

description
LOW QUALITY PROTEIN: THAP domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945779.1 False 2108 mRNA 0.40 4 47918157 47927478
TU1579358 True 1392 lncRNA 0.38 1 47918216 47919607

Neighbor

gene id symbol gene type direction distance location
LOC110492148 LOC106567259 coding downstream 9883 47409235 ~ 47908274 (-)
LOC110492147 LOC106572391 coding downstream 527170 47366232 ~ 47390987 (-)
LOC110492139 s38a3 coding downstream 814930 47089802 ~ 47103227 (-)
LOC110492137 LOC106567248 coding downstream 828594 47081938 ~ 47089563 (-)
LOC110492784 NA coding downstream 875312 47040588 ~ 47042845 (-)
LOC110492153 LOC106567263 coding upstream 25940 47953418 ~ 47956955 (-)
LOC118939549 LOC106567267 coding upstream 104424 48031902 ~ 48036060 (-)
LOC118939550 LOC106567268 coding upstream 114555 48042033 ~ 48074973 (-)
LOC118939551 LOC106567269 coding upstream 149026 48076504 ~ 48087589 (-)
LOC110492156 LOC106567270 coding upstream 161949 48089427 ~ 48093940 (-)
G1382535 NA non-coding downstream 311732 47605268 ~ 47606425 (-)
G1382475 NA non-coding downstream 426590 47491060 ~ 47491567 (-)
G1382454 NA non-coding downstream 477617 47439450 ~ 47440540 (-)
G1381365 NA non-coding downstream 510085 47405706 ~ 47408072 (-)
G1382743 NA non-coding upstream 46670 47974148 ~ 47974435 (-)
G1382745 NA non-coding upstream 54063 47981541 ~ 47981742 (-)
G1382767 LOC106567266 non-coding upstream 94635 48022113 ~ 48023047 (-)
G1382792 NA non-coding upstream 184506 48111984 ~ 48112221 (-)
G1382793 NA non-coding upstream 185050 48112528 ~ 48112781 (-)
G1381036 NA other downstream 1039011 46878611 ~ 46879146 (-)
LOC110491077 LOC106567232 other downstream 1156691 46724969 ~ 46761466 (-)
LOC110492767 LOC106572444 other downstream 1249563 46657459 ~ 46668762 (-)
G1382721 NA other upstream 15901 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 354735 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 1256830 49179653 ~ 49196706 (-)
LOC110491086 LOC106566907 other upstream 1675640 49576512 ~ 49719539 (-)
G1384875 NA other upstream 2137343 50064821 ~ 50065817 (-)
G1382724 LOC106577040 non-coding upstream 5077 47924684 ~ 47924920 (-)

Expression


Co-expression Network