LOC110492153 (LOC106567263)


Basic Information

Item Value
gene id LOC110492153
gene name LOC106567263
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47953418 ~ 47956955 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566207.2
ttgTTCATACGCGTATCtgtcctctcattggctagaatggtcctcCCTGATCTTGCCTCCCCCCTACTGCCTTCCCATTTTATAAGACATTTATTTTAATTGTTAGAGCGGCCAGTTGAGTATCTGGTGGTCAATATAATTGATCGTCTGTGGTTTCATAGTCCCAGAGCCATATCCGCCCGAAGTTTACCTCCACATTATTTGCTATCGTGCACCCCCTACTGGTGTTGACTGGGATCACACGCACTTGCACTAGCAGCAGAGAGCCAAGCAGCTGCCAACGCCCGGTGAAGTAAATACCAGATTCAGTGAGGAAAAGACAAAAGTAGACAGCACAAATATGCAGACGATTAAATGTGTTGTGGTTGGTGATGGAGCGGTGGGAAAAACCTGCCTTTTGATTTCATACACAACCAACAAATTCCCCTCGGAATATGTACCAACAGTGTTTGATAACTATGCAGTAACTGTCATGATTGGCGGTGAGCCGTACACCCTAGGATTATTTGATACTGCAGGTCAGGAGGATTATGACAGGTTACGACCTTTGAGCTATCCCCAGACGGATGTTTTTCTAGTTTGTTTCTCTAGTGTTTCACCCTCTTCATTTGAGAATGTTAAAGAAAAGTGGGTACCTGAAATCACTCACCACTGTCCCAAGACACCATTCCTGCTTGTTGGAACTCAGATTGATCTGAGAGATGACCCTTCCACAGTAGAGAAGCTGGCCAAGAACAAACAGAAGCCCATCAGCCCTGAGATGGCTGAGAAGCTCGCCCGTGACCTGAAGGCAGTCAAATATGTTGAGTGCTCTGCCCTGACACAGAAAGGACTAAAGAATGTGTTTGATGAGGCAATACTGGCTGCCCTGGAGCCTCCGGAACCCAAGAAGAGGCGCAAATGTGTGCTGCTCTGAGCATTTCCTCTCCTATTGGTTAGAGCATTTCAACAACATTACTTGGACAAAAGCAAACCATTGTTGCACAAGAGTACTTCAATCCTATTGGTAACTGATACAAATACTTAAAAAATGTTTgcaaagtagtgtgtgtgtggacttaATTGAACTAGGTTGATCTCTACTAGATCCTGTGATAATTACTCTCTTATAAAATGATAAACTTCTTTCCTAGAGCCATCTCAGTATTTTAAAGTTAAACAGATTGGTGGCTTCAGTCTTGTCTGAAGAGTTCAAGGGTCACTAACGCAAAGCTGATGATTGGAATCAGTGACAACAGAACAAAACCCTTTCATGTTGAATAGTGTCAGGGCAGCGTTGCCAGTGATTTATAAAGAATTCATGTTTTTAGGTGTGTATATAATGCCTTTGAACACCTGATGTAAACATAAATCCCCCTTCAACTGGGAAAGTGATGGCTTCAGTAAGTCGGTATtgaacaatatatacagtatgtcaggGCCTTGTCTGTCACATTGTACGGTTTCTGCATTCCAGGCACTTAAGTCTTAACGCAAATTGTTGGTGTAAACTCGACTTTTGCGTTAGGAAATACATTTTTCCTCTGACAGGAACTACACCTTACAgtatatttatttgttttataCAAAAAGACTCTTAATGTTGACAATGTGAGAAGTGCATTTCTTTAAATGTATCAACATAATAAAGCTTAGAATTCAA
>XM_021566206.2
ttgTTCATACGCGTATCtgtcctctcattggctagaatggtcctcCCTGATCTTGCCTCCCCCCTACTGCCTTCCCATTTTATAAGACATTTATTTTAATTGTTAGAGCGGCCAGTTGAGTATCTGGTGGTCAATATAATTGATCGTCTGTGGTTTCATAGTCCCAGAGCCATATCCGCCCGAAGTTTACCTCCACATTATTTGCTATCGTGCACCCCCTACTGGTGTTGACTGGGATCACACGCACTTGCACTAGCAGCAGAGAGCCAAGCAGCTGCCAACGCCCGGTGAAGTAAATACCAGATTCAGTGAGGAAAAGACAAAAGTAGACAGCACAAATATGCAGACGATTAAATGTGTTGTGGTTGGTGATGGAGCGGTGGGAAAAACCTGCCTTTTGATTTCATACACAACCAACAAATTCCCCTCGGAATATGTACCAACAGTGTTTGATAACTATGCAGTAACTGTCATGATTGGCGGTGAGCCGTACACCCTAGGATTATTTGATACTGCAGGTCAGGAGGATTATGACAGGTTACGACCTTTGAGCTATCCCCAGACGGATGTTTTTCTAGTTTGTTTCTCTAGTGTTTCACCCTCTTCATTTGAGAATGTTAAAGAAAAGTGGGTACCTGAAATCACTCACCACTGTCCCAAGACACCATTCCTGCTTGTTGGAACTCAGATTGATCTGAGAGATGACCCTTCCACAGTAGAGAAGCTGGCCAAGAACAAACAGAAGCCCATCAGCCCTGAGATGGCTGAGAAGCTCGCCCGTGACCTGAAGGCAGTCAAATATGTTGAGTGCTCTGCCCTGACACAGCGAGGTCTGAAGAATGTATTTGATGAAGCTATCCTAGCAGCTCTAGAACCTCCTGAAACCCAGCGAAAGAGAAAGTGCTGTCTGTTCTGATGATAAGCGTCTTTTAAAATCTTGCTTTGCCTCTGATCGTCTGCTGCTTCTTTAATGTCAAGAAATTACTGTCAGTCAACTAACCAAGTTGCTCTTTTAAAACGTGTGCCCATTAACTTCTTTCATTTCAATGTCTGATTTTGTTTTGACTTACCCTAATCACAATAGACTATACTGCCTTGGCTTTCATGGCAAGGATGCCAACACTTTCATTTTAGTACTTAATGTGCaagtttacattaggctgtagcTGACTGTGTGTTCCTTTTAAAATATATTACCTCAGTATTTATATGCTTCGGTTCCATTCAACCCTTCCAGGAAacatttctgtgctgtctatACAAGTATTATGAGCTTCAACTAACTTAATGTTTTTCTATCAcatcaatgtattttttttctactatATCAAAGACCGTAACTAAACATTATTGAAAGTTTAAGTTTTCCATTGGAGGTTAAGATCTTTGCAATCTTGAATGACTAAAACCTGTTATGATATGAATAAAGGATAGTTTAAATTACAA

Function

NR:

description
PREDICTED: cell division control protein 42 homolog isoform X1

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566207.2 False 1642 mRNA 0.42 6 47953418 47956955
XM_021566206.2 True 1446 mRNA 0.41 6 47954347 47956955

Neighbor

gene id symbol gene type direction distance location
thap3 LOC106567262 coding downstream 25940 47918157 ~ 47927478 (-)
LOC110492148 LOC106567259 coding downstream 45144 47409235 ~ 47908274 (-)
LOC110492147 LOC106572391 coding downstream 562431 47366232 ~ 47390987 (-)
LOC110492139 s38a3 coding downstream 850191 47089802 ~ 47103227 (-)
LOC110492137 LOC106567248 coding downstream 863855 47081938 ~ 47089563 (-)
LOC118939549 LOC106567267 coding upstream 74947 48031902 ~ 48036060 (-)
LOC118939550 LOC106567268 coding upstream 85078 48042033 ~ 48074973 (-)
LOC118939551 LOC106567269 coding upstream 119549 48076504 ~ 48087589 (-)
LOC110492156 LOC106567270 coding upstream 132472 48089427 ~ 48093940 (-)
LOC110491083 fam19a4 coding upstream 228022 48184977 ~ 48196697 (-)
G1382724 LOC106577040 non-coding downstream 28498 47924684 ~ 47924920 (-)
G1382535 NA non-coding downstream 346993 47605268 ~ 47606425 (-)
G1382475 NA non-coding downstream 461851 47491060 ~ 47491567 (-)
G1382454 NA non-coding downstream 512878 47439450 ~ 47440540 (-)
G1382743 NA non-coding upstream 17193 47974148 ~ 47974435 (-)
G1382745 NA non-coding upstream 24586 47981541 ~ 47981742 (-)
G1382767 LOC106567266 non-coding upstream 65158 48022113 ~ 48023047 (-)
G1382792 NA non-coding upstream 155029 48111984 ~ 48112221 (-)
G1382793 NA non-coding upstream 155573 48112528 ~ 48112781 (-)
G1382721 NA other downstream 7196 47943379 ~ 47946222 (-)
G1381036 NA other downstream 1074272 46878611 ~ 46879146 (-)
LOC110491077 LOC106567232 other downstream 1191952 46724969 ~ 46761466 (-)
G1382894 mitf other upstream 325258 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 1227353 49179653 ~ 49196706 (-)
LOC110491086 LOC106566907 other upstream 1646163 49576512 ~ 49719539 (-)
G1384875 NA other upstream 2107866 50064821 ~ 50065817 (-)
G1385645 NA other upstream 3098676 51055631 ~ 51056061 (-)

Expression


Co-expression Network