LOC118939549 (LOC106567267)


Basic Information

Item Value
gene id LOC118939549
gene name LOC106567267
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 48031902 ~ 48036060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947101.1
TGTTTGATTAGTCTAATGAACAAATGTTTCATTTCTGTTTCAGGACTGTCCATTTTGATGTGTCTTCAAATGGTGTCATCAACCAAACTAGTGTGCTACTTCACCAACTGGTCCCAGTACAGACCAGGCACTGGGAAATATCTGCCGGCCAATGTGGACCCCAACCTCTGCACTCATCTGATCTATGCCTTCTCAATGATCAACCACAACAACGAGCTAGTCACCTACGAGTGGAACGATGATGTTCTCTACCAGTCCTTCAATGGGCTGAAGAAGCAAAATCCTGCACTGAAGACCCTGTTGGCAGTTGGTGGATGGAACTTTGGGTCCAGCCAGTTCACCATCATGGTGTCAACACCTGCCAATCGCCAGAAGTTCATCCAGTCATCCATCAGTTTCCTGAGAATGTACGGCTTTGATGGCCTGGACCTGGACTGGGAGTACCCTGGAGCACGAGGGAGCCCCCCAGAGGACAAGAAAAGGTTTACACTGCTGTGCAGGGAGTTGCTCAAGGCATTTGAGAAGGAAGCCGCTGACACCAGAAGACCAAGGCTGCTGGTCACAGCTGCAGTGGCTGCTGGGAAGGGAAACATTGATAACGGTTATGAAATTGCAGAGGTTGCAAAATACTTGGACTTAATCAATGTGATGTCCTATGACATGGGTGGAGCCTGGGACCCATTCACACGCCACAACAGTCCCCTTTACCGCGGTGCTTCAGATGCAGAGGAAGGAGAGCACAAGTATTTCAACGTTGACTTTGCCATGAAGTACTGGAGGGACCAGGGCACACCTGTTGAGAAGCTGATGATGGGTTTCGCCACCTATGGGCGCACATTCCGCACTGTCTCTGCAGACAATGGTGTCGGAGCCAGAACGAGTGGACCAGCCTCTGCTGGACCCTATACCCGCGAGGCCGGCTTCTGGTCCTATTATGAGATCTGTACTTTCCTGAATGGAGCAACTGTTGAGTTGATTGAGGATCAGATGGTTCCCTTTGCCACCAAAGGAAATGAGTGGGTGGGATATGACAACCGAGAAAGCTTTGAAATAAAGGCACGCTATCTAAAAGACAACAAGTTTGGAGGGGCCATGATCTGGGCTCTGGATCTGGATGACTTTGCTGGACAATTCTGTGGGCAGGGCAACTATCCCCTGATCAGCCATCTGCGTTATCTTCTGGCCTCAGATTTGCCACCCCTTCCTTCCACAACACGTCCGCCACCCCTACCTTCCACAACACGTCCGCCACCCCTGCCAGGAACTACCACCAGCAGTGTGCCCGCCACCACCTCCACTCCTCTGCCTGGCAGTGGCTTCTGTGGGGGGAAAGCTGACGGCCTGTACTGTAACAAGGAAGACCTTAATGCCTTCTACCAGTGCGCCAGTGGACACACCTACCTCCAGAAGTGCGCAGCTAACCTTATCTTCAACGAGAGATGCAAGTGCTGTGACTGGAATTTGTATAACACGAGCCCGGCATAGGTGTTTTCTGTTAATGTACACATTGTAGCCTGAGTAcctgatatactgtatactgtttaTCTCAGTTTCATGGTACCAAGGCTAGTTTAGATTTAAATGATAAAATATCCACTCCAATTACAATGgaataatacaaaaaataaagtAGTTGTAATGTTTTTACGTAA
>XM_036947102.1
AACGGTATAAAAGGTGAGCTGTTTTGTCTTTCAGACACCGATCCAGTGTCTCACTGAGGACCAGGTGCCTCTTCGGTTTTGTAAGGAGAGGCCGTGTAACTAGAAACTCATCATGGCCCAACTAACACTTCTCGTTGGACTGTCCATTTTGATGTGTCTTCAAATGGTGTCATCAACCAAACTAGTGTGCTACTTCACCAACTGGTCCCAGTACAGACCAGGCACTGGGAAATATCTGCCGGCCAATGTGGACCCCAACCTCTGCACTCATCTGATCTATGCCTTCTCAATGATCAACCACAACAACGAGCTAGTCACCTACGAGTGGAACGATGATGTTCTCTACCAGTCCTTCAATGGGCTGAAGAAGCAAAATCCTGCACTGAAGACCCTGTTGGCAGTTGGTGGATGGAACTTTGGGTCCAGCCAGTTCACCATCATGGTGTCAACACCTGCCAATCGCCAGAAGTTCATCCAGTCATCCATCAGTTTCCTGAGAATGTACGGCTTTGATGGCCTGGACCTGGACTGGGAGTACCCTGGAGCACGAGGGAGCCCCCCAGAGGACAAGAAAAGGTTTACACTGCTGTGCAGGGAGTTGCTCAAGGCATTTGAGAAGGAAGCCGCTGACACCAGAAGACCAAGGCTGCTGGTCACAGCTGCAGTGGCTGCTGGGAAGGGAAACATTGATAACGGTTATGAAATTGCAGAGGTTGCAAAATACTTGGACTTAATCAATGTGATGTCCTATGACATGGGTGGAGCCTGGGACCCATTCACACGCCACAACAGTCCCCTTTACCGCGGTGCTTCAGATGCAGAGGAAGGAGAGCACAAGTATTTCAACGTTGACTTTGCCATGAAGTACTGGAGGGACCAGGGCACACCTGTTGAGAAGCTGATGATGGGTTTCGCCACCTATGGGCGCACATTCCGCACTGTCTCTGCAGACAATGGTGTCGGAGCCAGAACGAGTGGACCAGCCTCTGCTGGACCCTATACCCGCGAGGCCGGCTTCTGGTCCTATTATGAGATCTGTACTTTCCTGAATGGAGCAACTGTTGAGTTGATTGAGGATCAGATGGTTCCCTTTGCCACCAAAGGAAATGAGTGGGTGGGATATGACAACCGAGAAAGCTTTGAAATAAAGGCACGCTATCTAAAAGACAACAAGTTTGGAGGGGCCATGATCTGGGCTCTGGATCTGGATGACTTTGCTGGACAATTCTGTGGGCAGGGCAACTATCCCCTGATCAGCCATCTGCGTTATCTTCTGGCCTCAGATTTGCCACCCCTTCCTTCCACAACACGTCCGCCACCCCTACCTTCCACAACACGTCCGCCACCCCTGCCAGGAACTACCACCAGCAGTGTGCCCGCCACCACCTCCACTCCTCTGCCTGGCAGTGGCTTCTGTGGGGGGAAAGCTGACGGCCTGTACTGTAACAAGGAAGACCTTAATGCCTTCTACCAGTGCGCCAGTGGACACACCTACCTCCAGAAGTGCGCAGCTAACCTTATCTTCAACGAGAGATGCAAGTGCTGTGACTGGAATTTGTATAACACGAGCCCGGCATAGGTGTTTTCTGTTAATGTACACATTGTAGCCTGAGTAcctgatatactgtatactgtttaTCTCAGTTTCATGGTACCAAGGCTAGTTTAGATTTAAATGATAAAATATCCACTCCAATTACAATGgaataatacaaaaaataaagtAGTTGTAATGTTTTTACGTAA

Function

NR:

description
acidic mammalian chitinase-like isoform X2

GO: NA

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947101.1 False 1652 mRNA 0.49 10 48031902 48035116
XM_036947102.1 True 1746 mRNA 0.50 12 48031902 48036060

Neighbor

gene id symbol gene type direction distance location
LOC110492153 LOC106567263 coding downstream 74947 47953418 ~ 47956955 (-)
thap3 LOC106567262 coding downstream 104424 47918157 ~ 47927478 (-)
LOC110492148 LOC106567259 coding downstream 123628 47409235 ~ 47908274 (-)
LOC110492147 LOC106572391 coding downstream 640915 47366232 ~ 47390987 (-)
LOC110492139 s38a3 coding downstream 928675 47089802 ~ 47103227 (-)
LOC118939550 LOC106567268 coding upstream 5973 48042033 ~ 48074973 (-)
LOC118939551 LOC106567269 coding upstream 40444 48076504 ~ 48087589 (-)
LOC110492156 LOC106567270 coding upstream 53367 48089427 ~ 48093940 (-)
LOC110491083 fam19a4 coding upstream 148917 48184977 ~ 48196697 (-)
LOC118939552 NA coding upstream 172233 48208293 ~ 48212220 (-)
G1382767 LOC106567266 non-coding downstream 8855 48022113 ~ 48023047 (-)
G1382745 NA non-coding downstream 50160 47981541 ~ 47981742 (-)
G1382743 NA non-coding downstream 57467 47974148 ~ 47974435 (-)
G1382724 LOC106577040 non-coding downstream 106982 47924684 ~ 47924920 (-)
G1382792 NA non-coding upstream 75924 48111984 ~ 48112221 (-)
G1382793 NA non-coding upstream 76468 48112528 ~ 48112781 (-)
G1382803 NA non-coding upstream 92944 48129004 ~ 48129226 (-)
G1382840 NA non-coding upstream 144945 48181005 ~ 48182641 (-)
G1382841 NA non-coding upstream 146963 48183023 ~ 48184217 (-)
G1382721 NA other downstream 85680 47943379 ~ 47946222 (-)
LOC110492137 LOC106567248 other downstream 942372 47081938 ~ 47089563 (-)
G1381036 NA other downstream 1152756 46878611 ~ 46879146 (-)
LOC110491077 LOC106567232 other downstream 1270436 46724969 ~ 46761466 (-)
G1382894 mitf other upstream 246153 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 1148248 49179653 ~ 49196706 (-)
LOC110491086 LOC106566907 other upstream 1567058 49576512 ~ 49719539 (-)
G1384875 NA other upstream 2028761 50064821 ~ 50065817 (-)
G1385645 NA other upstream 3019571 51055631 ~ 51056061 (-)

Expression


Co-expression Network