LOC118939551 (LOC106567269)


Basic Information

Item Value
gene id LOC118939551
gene name LOC106567269
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 48076504 ~ 48087589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947103.1
acaaaatctaatttagaataaggctgtaacgtagcaaaaagtgaaggggtctgaactttctgaatgcactgtacatagcaAATATTTGGAATGTAAATTTTAACAATGCTAGTGAAATAGGAACTATGCACTGTACATTTTTCAGTTCTGAGAAGCTCTGCATACTGTCTATATTACGTTAGTTCTGAGAAGCATAACAAAACATCACTTAACACCCACATCTGTCTGAAATATGTACTGGCTAGAATGGAAGTTGTGACTTTCTCAACTCACTCTGAAATCCCTATTGCCCCTTCTCTTTATTTAGATATCTACTCCATGTACTTCACAGCCTGAAGTGAGTCTGTGGTAACAGCAGATGACCTTAAGCAGAGGGATCTGCGGTCTTAAAGAGGATTGGTCAGTCAGAGGGCTGCTATGCCCAACCCTCCGCTCAGACCAGCCAATAGTATACAGACCCTACAGGAAGGTAGGATGAGATTAAGTATCAAAACAGAAACAGTGTCTGTTCCTTTGAAGGGTTGCCCTGCAGGACATCTAATAAGAAACTGTTTCAGGATAGAGATCAAAACATTAAAGGAAGAAAGCGGAGGATAACAGGAGAAGAGTTGCCCCAGGGACCAAATGATTCTGATTTCTAAGCCTAAGCCAATACAGGCCCAGCTCCTAGCCCACTGTTGGTTGTCTTTGTCCCCAACCAACTACATCCAAGCTAAAGATGGGTCGGTTCCTCAACATAAACCTGTGTGTGAGTCACCTGGGAGGGAGGACGTTAAGACTGTTCTGCAAGCTCAGGTACCTCATAACCATCCTTAGAACCTTCCCTCACCTGGCCAAGACACCCCTAGCCTTGGACTTCCGTAGCTGCTCCTTGccttcctctcccctgcctcccagCTTTGCCAGGAAAGGAGCCCCCAAGAGCTTGAGGTTCAACAACATGAGCTTGACCGCTGAGTACCTCCTTGGGGGTGGTACCAGAGGGGTGAGATACTCCCAGGCGGCCCGTGTCTACTCAACCTCTAGTAGGGATGTGTTGAAGGCTGAGGCCCCCATCGGGGTCCTTCATGAGGACAGCCTTCAGGAGGACAGCCAGACACCCTTTCAGTTGAGCATGCTTTGTCTGGGTGATTCTTTTAATCGCCTCTCCAGACACATCAATATTTACTTCAAGAGAAAGGATGTGACCCAGCTGTCCTCTGTTGCTGGGAATGTGGGGTTTGTCGTCACAACTCAGGAGAGTCTGGGCAGCAGGCCACAGAGGCGTAGTCAAAGTAACAGGGCAGCCAGGGAGGACAgtgagacaacaacacagcagccTTTGGAAAATGAAAACGATCTTGAGACGTCAGACAGCAAGACAGAGACAAGCTCCGCCCCCCAGCGATATGGTGGACTGCAGTTATTTCACATCAGTTCCATTGCCTCCAGGTTTGGGGAAAGTTACAGTTATGTTGCTCATCACATAAACTCATCACATGAACACCTAAAGTCAGTGTTCACCAAAGGTTCGGCACAGGACGTCCTAGGTTCGACTCTGGAAGAGACTCTGGAGGATCTGGCTTCAAGCAGAGTGTCGaccaggaggatgaggaggaggaaaccACTAAAAATCAGTTACATTGAAAGTGTAAAGGAAACTGAAACGGCTCATTTAAAGACTAGTGCAGCTGTAGCTCAGACCACAGCCATTCAGAAACCAGCCATTGAACGTGCAGATATCTCCAACAgctgggagggagaggcagagggctACCTACACTTTGCCCAGCACGTCAACAGATACTTTGGAGCCAAAACCGTTACAGACGAAACTGAACTACCACCACCTCAAACAGAACATCTGGTTGCGGACCACATGCCAAACAGCAGGACGTATCAACAGCAGTGTTCTAAATCTTCTACCTCCAGACATGAACAATCAGCCACAGGGCTAAAGCAGGAAGATCCACCCATCCGTCCCAAATCCCTTTTCCACATCAGTAACATCACAACCAGTTTCGGTGAGAACTATGCATACATGGCTAATTACGTCAACAGCTATTTCAAAGGCAGCTATGATgccgtggaggaggaggagttagaaAGAGGTCCCATCGAGGAACGCAGGGGAGAATGGGAGATGGAGTATGGATCCGTTAGGGTCCCGAAACCACAGCCTGCTGTATCCTTCATGGAGTGCCTTCTCAATCCCAGTAGTGCCATCTCCAGCCTCCTGGGGGGGTATCTGGGGGGCTCCTGGGCTCAGAGCAACCAGGCCCATCCTGCCTCTATGCTCAGTGAGGCCACACTTAGAAGAATGGTGATGGGCAGGAGACAGGCAGAGGAGATGACCCGTGCTTTGGTGTCCAGTCTACAACAGGCCTTCTCTCCTGAGGCCATCACCGAAGTTGTCGATGAGCTCAACACACACCTTATCCGACACCCAGGATGCAAAGCAGTGGTCTGGCAGGAGAAAGCTGCTGTTCAGCTCTTAAGACAGCGGCGTAGCCATAGAGAAGACCAGGAACTTCAGTGTGTCATTAGGGAAACCttggctctgattggctatgtgGATCCAGTCAAAGGTCGTGGAATCCGAGTGCTCTCAATCGATGGTGGTGGCACAAGAGGGGTGGTGCCACTGCAGGTCCTCAAGCAGCTGGAAGCGGAAACAGGCAAGCAGGTTCACCAGCTGTTTGACTACATCTGTGGAGTGAGCACAGGGGCAGTGTTGGCCTTCATGCTTGGCCTGGCCCGTTTCTCTCTAGAGGAGTGTGCAGATATGTACCGTCGTTTTGGCTCGGATGTGTTCTGTCAGAACCCCTTGGTGGGCACAGTGAAGATGGGCTGGAGTCACTCCTACTACAGCACCGAGACCTGGGAGATGATACTGAGAGAGAAGATGGGCGACCAAGTTCTGATTAAAACAGCCAGGGATGAGTTGAGCCCCAAGGTGTCAGCGGTGAGCGCCGTGGTGAACTGGGGGACCAGTCCCAAGGCCTTTATCTTCAGGAACTACAACCACAGCCCAGGCCGTCTCAGCCGCTACGCAGGGGGGTCTGGGTACCAGATGTGGCAGGCGGTGAGAGCGTCGTCCGCTGCCCCGGGATACTTCCAGGAATTCCCCTTACACAGTGACATCCATCAGGATGGTGGCCTCATTTTAAACAACCCTTGTGCCCTCGCCGTCCACGAGAGCCGTCTCCTGTGGCCCAACCAGCCTTACCAGTGTGTCCTGTCGCTCGGCACCGGTCGCTATGACAATGCTAAGCGGAGCCCGGGCACCTCCACCAGCCTGCGTGCCAAGATCAACCACCTGATCTGCAGTGCCACCGACACAGAGGGGGTCCACACCCTCCTGGACGACTTGTTGGCCCCAAACGTCTACTTCAGGTTCAACCCCATGCTGAGTGCCGAGGTATCCCTGGATGAGAGCAGCGTCAGGGCCATGGAGCAGCTGCAGGCTGACACCCAGGTCTACCTGGACAGGAACAAGCCCAAGATGGCCAGGCTGTGTAAGGTGCTGGGGCAGGAGCGCACTGCGCTGAGCCACACCAAGGACTGGGTCAGTGAGAGAGCCTGGGAGATGCAGCAGAGCTGGGTTTGAGGGTCCTAGGTCACAGGTC

Function

NR:

description
calcium-independent phospholipase A2-gamma-like isoform X2

GO: NA

KEGG:

id description
K16815 PNPLA8; calcium-independent phospholipase A2-gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947103.1 True 3608 mRNA 0.52 9 48076504 48087589

Neighbor

gene id symbol gene type direction distance location
LOC118939550 LOC106567268 coding downstream 1531 48042033 ~ 48074973 (-)
LOC118939549 LOC106567267 coding downstream 40444 48031902 ~ 48036060 (-)
LOC110492153 LOC106567263 coding downstream 119549 47953418 ~ 47956955 (-)
thap3 LOC106567262 coding downstream 149026 47918157 ~ 47927478 (-)
LOC110492148 LOC106567259 coding downstream 168230 47409235 ~ 47908274 (-)
LOC110492156 LOC106567270 coding upstream 1838 48089427 ~ 48093940 (-)
LOC110491083 fam19a4 coding upstream 97388 48184977 ~ 48196697 (-)
LOC118939552 NA coding upstream 120704 48208293 ~ 48212220 (-)
LOC110492159 uba3 coding upstream 133169 48220758 ~ 48230211 (-)
LOC110492161 lmod3 coding upstream 147401 48232398 ~ 48241496 (-)
G1382767 LOC106567266 non-coding downstream 53457 48022113 ~ 48023047 (-)
G1382745 NA non-coding downstream 94762 47981541 ~ 47981742 (-)
G1382743 NA non-coding downstream 102069 47974148 ~ 47974435 (-)
G1382724 LOC106577040 non-coding downstream 151584 47924684 ~ 47924920 (-)
G1382792 NA non-coding upstream 24395 48111984 ~ 48112221 (-)
G1382793 NA non-coding upstream 24939 48112528 ~ 48112781 (-)
G1382803 NA non-coding upstream 41415 48129004 ~ 48129226 (-)
G1382840 NA non-coding upstream 93416 48181005 ~ 48182641 (-)
G1382841 NA non-coding upstream 95434 48183023 ~ 48184217 (-)
G1382721 NA other downstream 130282 47943379 ~ 47946222 (-)
LOC110492137 LOC106567248 other downstream 986974 47081938 ~ 47089563 (-)
G1381036 NA other downstream 1197358 46878611 ~ 46879146 (-)
LOC110491077 LOC106567232 other downstream 1315038 46724969 ~ 46761466 (-)
G1382894 mitf other upstream 194624 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 1096719 49179653 ~ 49196706 (-)
LOC110491086 LOC106566907 other upstream 1515529 49576512 ~ 49719539 (-)
G1384875 NA other upstream 1977232 50064821 ~ 50065817 (-)
G1385645 NA other upstream 2968042 51055631 ~ 51056061 (-)

Expression


Co-expression Network