LOC110492159 (uba3)


Basic Information

Item Value
gene id LOC110492159
gene name uba3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 48220758 ~ 48230211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947110.1
AGCTTCTCGCGAGAGTAAGACAAGTGCATTAATGTTGATGGAAATCACAATTGCGCTGTGCTGCACATAATGCGCAGAACATCCTTCATGTACAGTCATTGCAAATCCCTGTGAATTTTGGGCACATATGCTAACGCAGGTTTGATTTTCGTGAACATATAGTACAGCCAGTGAGGACATGGAACCTTGAAAGTATGGCGGATGCTGAGGAGCCAATGGCTGTAGATGGAGGACATGGAGATAGTGGAGACTGGGATGGCCGATGGAACCATGTGAAGAAGTTCCTGGAAAGACCCGGCCCATTCACTCATCCTGACTTTGAGCCAAGCATTGAGTCCCTTGGATTCTTATTGGAGACATGCAAAATCCTGGTCATTGGAGCTGGAGGACTTGGATGTGAGCTGCTCAAAAATCTGGCTCTGTCAGGTTTTCGTCAAATTCATGTTGTTGACATGGATACCATCGATATCTCCAACCTCAACAGGCAGTTCCTTTTCAGGCCCAAAGATGTTGGACGGCCAAAAGCAGATGTGGCTGCTGACTTTGTCAATAATCGCATCCCTGGATGTAAAGTTGTCCCACACTTCAACAAAATACAAGACTTTGATGAATCTTTCTATAGACAATTCCACATTATTGTTTGTGGATTAGATTCGATCATCGCCAGGCGTTGGATGAATGGCATGCTGATATCCCTTCTGAGCTACAATAATGGTGTTCTGGACCCCAGTTCCATCATCCCCCTCATTGACGGTGGGACAGAGGGTTTCAAAGGCAATGCTCGGGTCATTCTGCCTGGCATGACCGCGTGCATCGACTGCACTCTGGCGCTTTACCCACCACAGATTAATTTCCCCATGTGCACCATTGCGTCTATGCCGCGGTTGCCAGAGCACTGCGTTGAGTATGTCAGAATGCTACAGTGGCCCAAAGACGAGCCTTTTGGAGAGGGTGTTGGTTTGGATGGGGATAACCCTGAGCACATCCAGTGGGTGTTCCAGAGGGCCCATGAGAGAGCTGCTGACTACAACATCACAGGAGTCACATACAGACTAACACAAGGCGTCGTGAAGAGGATCATCCCTGCTGTCGCGTCAACTAATGCTGTAATAGCTGCTGCCTGCTCCACTGAAGTTTTTAAAATGGCTTCAAGCGCTTATATTCCACTGAATAATTATCTGGTATTTAATGATGTGGACGGACTGTACACCTACACATTCGAGGCAGAGCGAAAGGAGAACTGCTCAGCTTGTAGCCAGGTGCCCCAGGATCTACAGTTCCCACCCTCTGCCAAGCTACAGGAGGTCCTGGAGTACCTGACTGAGAACGCCTCCCTACAAATGAAGTCCCCAGCCATCACAGCAACCCTGGAAGGGAAAAATAAGACACTATATCTACAGACTGTAGCTTCAATTGAAGAAAGAACTAGACCCAACCTTTGCAAAACCTTGAAAGAACTGGGATTGTCTGATGGACAGGAACTAGCAGTGGCAGATATCACCACACCTCAGACGGTCCTCTTCAAGCTGAAACTCACCTCTTAAACCGTCAAAGTACACATACAGAATCTATCAAGACATTTGACAACCTTTGGGGAAAGTGATACAGCGTGGTATTGTTTTAATATATTTGAGACTGATCATGTATGTAAGATCCATTATGACGGGTAGTGTGGAAGGTCAACAACTTTATATCATTACAATGTAATCAGTCGGAACGTTTTCCTTAACAATTATGTTTCACTTATTAATGTTTGCTCCAAATGGCTGTCTTCTTTCCCCCATTCAAAATAAGTAGTTTCTCCTTATATACATAATAATGACAACTGTGCTACAATAAAGTGTTTTGTTAATAAAAGTTGGTGCAAAGTG
>XM_021566216.2
TCACTTTTTCTCTTTTAGTTTTGTAAACCACCAGGACCACCTTTCCTTCCTGGGGCATTTGGAAAAATTACAGCCAGTGAGGACATGGAACCTTGAAAGTATGGCGGATGCTGAGGAGCCGGAGAAGAAAAGAAGGAAAATAGAGGAGCTGACTGAGAAAATGGCTGTAGATGGAGGACATGGAGATAGTGGAGACTGGGATGGCCGATGGAACCATGTGAAGAAGTTCCTGGAAAGACCCGGCCCATTCACTCATCCTGACTTTGAGCCAAGCATTGAGTCCCTTGGATTCTTATTGGAGACATGCAAAATCCTGGTCATTGGAGCTGGAGGACTTGGATGTGAGCTGCTCAAAAATCTGGCTCTGTCAGGTTTTCGTCAAATTCATGTTGTTGACATGGATACCATCGATATCTCCAACCTCAACAGGCAGTTCCTTTTCAGGCCCAAAGATGTTGGACGGCCAAAAGCAGATGTGGCTGCTGACTTTGTCAATAATCGCATCCCTGGATGTAAAGTTGTCCCACACTTCAACAAAATACAAGACTTTGATGAATCTTTCTATAGACAATTCCACATTATTGTTTGTGGATTAGATTCGATCATCGCCAGGCGTTGGATGAATGGCATGCTGATATCCCTTCTGAGCTACAATAATGGTGTTCTGGACCCCAGTTCCATCATCCCCCTCATTGACGGTGGGACAGAGGGTTTCAAAGGCAATGCTCGGGTCATTCTGCCTGGCATGACCGCGTGCATCGACTGCACTCTGGCGCTTTACCCACCACAGATTAATTTCCCCATGTGCACCATTGCGTCTATGCCGCGGTTGCCAGAGCACTGCGTTGAGTATGTCAGAATGCTACAGTGGCCCAAAGACGAGCCTTTTGGAGAGGGTGTTGGTTTGGATGGGGATAACCCTGAGCACATCCAGTGGGTGTTCCAGAGGGCCCATGAGAGAGCTGCTGACTACAACATCACAGGAGTCACATACAGACTAACACAAGGCGTCGTGAAGAGGATCATCCCTGCTGTCGCGTCAACTAATGCTGTAATAGCTGCTGCCTGCTCCACTGAAGTTTTTAAAATGGCTTCAAGCGCTTATATTCCACTGAATAATTATCTGGTATTTAATGATGTGGACGGACTGTACACCTACACATTCGAGGCAGAGCGAAAGGAGAACTGCTCAGCTTGTAGCCAGGTGCCCCAGGATCTACAGTTCCCACCCTCTGCCAAGCTACAGGAGGTCCTGGAGTACCTGACTGAGAACGCCTCCCTACAAATGAAGTCCCCAGCCATCACAGCAACCCTGGAAGGGAAAAATAAGACACTATATCTACAGACTGTAGCTTCAATTGAAGAAAGAACTAGACCCAACCTTTGCAAAACCTTGAAAGAACTGGGATTGTCTGATGGACAGGAACTAGCAGTGGCAGATATCACCACACCTCAGACGGTCCTCTTCAAGCTGAAACTCACCTCTTAAACCGTCAAAGTACACATACAGAATCTATCAAGACATTTGACAACCTTTGGGGAAAGTGATACAGCGTGGTATTGTTTTAATATATTTGAGACTGATCATGTATGTAAGATCCATTATGACGGGTAGTGTGGAAGGTCAACAACTTTATATCATTACAATGTAATCAGTCGGAACGTTTTCCTTAACAATTATGTTTCACTTATTAATGTTTGCTCCAAATGGCTGTCTTCTTTCCCCCATTCAAAATAAGTAGTTTCTCCTTATATACATAATAATGACAACTGTGCTACAATAAAGTGTTTTGTTAATAAAAGTTGGTGCAAAGTG
>XR_005036538.1
TTTAGCTTCTCGCGAGAGTAAGACAAGTGCATTAATGTTGATGGAAATCACAATTGCGCTGTGCTGCACATAATGCGCAGAACATCCTTCATGTACAGTCATTGCAAATCCCTGTGAATTTTGGGCACATATGCTAACGCAGGTTTGATTTTCGTGAACATATAGTACAGCCAGTGAGGACATGGAACCTTGAAAGTATGGCGGATGCTGAGGAGCCGGAGAAGAAAAGAAGGAAAATAGAGGAGCTGACTGAGAAAATGGCTGTAGATGGAGGACATGGAGATAGTGGAGACTGGGATGGCCGATGGAACCATGTGAAGAAGTTCCTGGAAAGACCCGGCCCATTCACTCATCCTGACTTTGAGCCAAGCATTGAGTCCCTTGGATTCTTATTGGAGACATGCAAAATCCTGGTCATTGGAGCTGGAGGACTTGGATGTGAGCTGCTCAAAAATCTGGCTCTGTCAGGTTTTCGTCAAATTCATGTTGTTGACATGGATACCATCGATATCTCCAACCTCAACAGGCAGTTCCTTTTCAGGCCCAAAGATGTTGGACGGCCAAAAGCAGATGTGGCTGCTGACTTTGTCAATAATCGCATCCCTGGATGTAAAGTTGTCCCACACTTCAACAAAATACAAGACTTTGATGAATCTTTCTATAGACAATTCCACATTATTGTTTGTGGATTAGATTCGATCATCGCCAGGCGTTGGATGAATGGCATGCTGATATCCCTTCTGAGCTACAATAATGGTGTTCTGGACCCCAGTTCCATCATCCCCCTCATTGACGGTGGGACAGAGGGTTTCAAAGGCAATGCTCGGGTCATTCTGCCTGGCATGACCGCGTGCATCGACTGCACTCTGGCGCTTTACCCACCACAGATTAATTTCCCCATGTGCACCATTGCGTCTATGCCGCGGTTGCCAGAGCACTGCGTTGAGTATGTCAGAATGCTACAGTGGCCCAAAGACGAGCCTTTTGGAGAGGGTGTTGGTTTGGATGGGGATAACCCTGAGCACATCCAGTGGGTGTTCCAGAGGGCCCATGAGAGAGCTGCTGACTACAACATCACAGGAGTCACATACAGACTAACACAAGGCGTCGTGAAGAGGATCATCCCTGCTGTCGCGTCAACTAATGCTGTAATAGCTGCTGCCTGCTCCACTGAAGTTTTTAAAATGGCTTCAAGCGCTTATATTCCACTGAATAATTATCTGGTATTTAATGATGTGGACGGACTGTACACCTACACATTCGAGGCAGAGCGAAAGGAGAACTGCTCAGCTTGTAGCCAGGTGCCCCAGGATCTACAGTTCCCACCCTCTGCCAAGCTACAGGAGGTCCTGGAGTACCTGACTGAGAACGCCTCCCTCATTCATCTTTTCCAGACAAATGAAGTCCCCAGCCATCACAGCAACCCTGGAAGGGAAAAATAAGACACTATATCTACAGACTGTAGCTTCAATTGAAGAAAGAACTAGACCCAACCTTTGCAAAACCTTGAAAGAACTGGGATTGTCTGATGGACAGGAACTAGCAGTGGCAGATATCACCACACCTCAGACGGTCCTCTTCAAGCTGAAACTCACCTCTTAAACCGTCAAAGTACACATACAGAATCTATCAAGACATTTGACAACCTTTGGGGAAAGTGATACAGCGTGGTATTGTTTTAATATATTTGAGACTGATCATGTATGTAAGATCCATTATGACGGGTAGTGTGGAAGGTCAACAACTTTATATCATTACAATGTAATCAGTCGGAACGTTTTCCTTAACAATTATGTTTCACTTATTAATGTTTGCTCCAAATGGCTGTCTTCTTTCCCCCATTCAAAATAAGTAGTTTCTCCTTATATACATAATAATGACAACTGTGCTACAATAAAGTGTTTTGTTAATAAAA

Function

symbol description
uba3 Predicted to enable NEDD8 activating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBA3 (ubiquitin like modifier activating enzyme 3).

NR:

description
NEDD8-activating enzyme E1 catalytic subunit-like

GO: NA

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947110.1 False 1871 mRNA 0.45 16 48220758 48229927
XM_021566216.2 False 1816 mRNA 0.45 18 48220758 48230211
XR_005036538.1 True 1915 mRNA 0.45 17 48220772 48229930

Neighbor

gene id symbol gene type direction distance location
LOC118939552 NA coding downstream 8538 48208293 ~ 48212220 (-)
LOC110491083 fam19a4 coding downstream 24061 48184977 ~ 48196697 (-)
LOC110492156 LOC106567270 coding downstream 126818 48089427 ~ 48093940 (-)
LOC118939551 LOC106567269 coding downstream 133169 48076504 ~ 48087589 (-)
LOC118939550 LOC106567268 coding downstream 145785 48042033 ~ 48074973 (-)
LOC110492161 lmod3 coding upstream 4779 48232398 ~ 48241496 (-)
LOC110492160 frmd4b coding upstream 11847 48242058 ~ 48272289 (-)
LOC110492165 LOC106567279 coding upstream 103709 48333920 ~ 48343017 (-)
LOC110492167 NA coding upstream 112921 48343132 ~ 48347885 (-)
LOC110492168 foxp1 coding upstream 118256 48348467 ~ 48371945 (-)
G1382875 NA non-coding downstream 2718 48217820 ~ 48218040 (-)
G1382873 NA non-coding downstream 6648 48213704 ~ 48214110 (-)
G1382872 NA non-coding downstream 7124 48213334 ~ 48213634 (-)
G1382841 NA non-coding downstream 36541 48183023 ~ 48184217 (-)
G1382933 mitf non-coding upstream 93608 48323819 ~ 48324138 (-)
G1382935 NA non-coding upstream 95851 48326062 ~ 48326372 (-)
G1382937 NA non-coding upstream 96966 48327177 ~ 48327582 (-)
G1382938 mitf non-coding upstream 97735 48327946 ~ 48331925 (-)
G1382721 NA other downstream 274536 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 771893 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 1131228 47081938 ~ 47089563 (-)
G1381036 NA other downstream 1341612 46878611 ~ 46879146 (-)
LOC110491077 LOC106567232 other downstream 1459292 46724969 ~ 46761466 (-)
G1382894 mitf other upstream 52002 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 954097 49179653 ~ 49196706 (-)
LOC110491086 LOC106566907 other upstream 1372907 49576512 ~ 49719539 (-)
G1384875 NA other upstream 1834610 50064821 ~ 50065817 (-)
G1385645 NA other upstream 2825420 51055631 ~ 51056061 (-)

Expression


Co-expression Network