LOC110492167


Basic Information

Item Value
gene id LOC110492167
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 48343132 ~ 48347885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947111.1
agcatcccagagtcgcctcttcactgttgactttgagactggtgttattcgggtaccatttaatgaagctgccagttgagaacttgtgaggtgtctgtttctcaaactagacactctaatgtacatgTCCTCTTGATAAATGATGCACTTGaattaacacaacgtgccattggaacacaggagtgatggttgctgataatgggcctctgtagatattccattacaaatcagccatttccagctataatagtcatttacaacattgacaatgtctacactgtatttatgatcaatttgatgttattttaatggacaaaaaatgtgatttttctttaaaaaagcaggacatttctaagtggccccaaacttttgagtggtagtgtatgtatagCCTCTATTGGGATATAATTATTTGTGTAGCCTCCTAATCTCATTTTCTTCCCACTGGCCCAAACATTACTTTTTGGTCTTATTTACCATTGTATTGTACATTGCCAGATTTGTGCACTAAAAGCTGTCTGTAATAAATGCTGTATCTAAAGTGTGTGTGGTGAATATACAATTTGTAGTATTCATCATTGTGTTTATGTGCAGGTTTGAGTTATGACCTGAGTTTGTTTTAACAGTGTGGTAATGGCCATACTTCAGTGGTCAATATGTGTATATCTAATGGATGACAGGCAATGTGAAGAAGAAGCCAACTCTGTTTGTCAGGAGAAGCGTCTACTGTATAAATGAATGAATTTGCCAGTTGGAAACCCATCGCTTACTGGATTAATTGACACAAACAAACCTTATCATTGTGAATTATTGTAATTCAGTGATAATTCTTTCAGCGTTCTGTAAAGTCTGCACTGCATAAAgacaaatcaatacataatagtAAATAGGGTTATCCAAGCAATAATAACCCTAGAGAAGTACAAATACAGATACAACCAGAGAAATGAATCTGAAGGGTGTTTGAGCACGGTCTGTTACAAAGAGAAGATTCAAGTGTGAGACAGGCCTACACTAAATCTATATACACATGCCCTTTGCTATATATCGGGAATATTTTTTATAATTGAATAACTGTGAATGTACTCGCCTCATTCAGTTCAGACCATATCATCAACCAGCCTGTATGTGTAAACACTGCACCGAGATGGGTATCCTATAATGGCATCTATGTAGGCTATCATGGTGTAATGCTATCTGGCTCACTAGACTGAGGTCGTTGGAGTGATAAAATATGATTATACTTGACCAAAGATCATCCTATCAAACGTTTTTGCGCTGCCTGATTGGCTATGGCCCGGATCAATATGGGGTGTGTCTTGTCCTGCAAGTTTACAGAGCGCTGAAATGCAAGCTGCGCTTCATCCACACAGGAGGGTCCAGAGGCTTTACAAGTATTGGATGGTTCTTTCTATTTGTGAACAAAGGGAAATAAAACAATTTGTCGACCTTCCAGAAGTTTGTTTCAGATGACCACACAACCAAGGACCTCTAACAATGAACCAGATCATGTCAAGGCGAGGAGGGACCAGAGTCCTTTTCTGGAGGGAGACATGTCTCGGCCCACAAATTCTGGGGTGATGAGCAGCAACAAGGTTGTGGTGAGTGGAGTGCGGAGGCTGAGCACCATCTCTGAGCAAGACCCAGACAAGGTAGATACTGACCTCAGCTCTCAGGATCCCATGGGAGGCCGGGAGTGGGGCGGATCCAGTTTCTCACTGTGTTCCAACAAGCACATCAACAACAGTAGCGATCACTTCTCCTCCTTCGAATCCCATCAGCCTGACGCCGGGGATGATTGTGCTGCCATTCTGCTGGCCTGCCTCTACTGCCGGTTCTATGACATCGTAGTCATGGTGCCAGACACATGTGAGAGAGCTGTAAGCCGCTGTTTCCCCTCGTTCAAATACCTCAACGCGTCCAGGGAGCAGGAGCGGGCCAGTGGCTGGTGCAACTGCAGTGTAGAACTGGACTGCAGCTGCTGCAACTCCTGTCAGGAGGGAGCCGAGTTACTGGAACTCGCCATGGAGATCTCTGAAGTCTGCTACAGATGAAAAGATCCCCTCAATCAAATTACTCCTTTTGGCCTAAAAGGACTAAACATGCACCTTGTCAATGTTTGTTCTATCAAAATATCAATAACTAGAGTTGTCACATTTCTTAGTTTCAGAGGGAACATGAATATGTTTACAAAGATGGACACTGTGGCTAAAGAGAGTGTTAACTGAGGTATAGAGTGCTTAATAATGATCCCCCTATTGAGCCCCATTAAATATTAACCACCAAAATGCTCCATTCCGGAAACGCTTCAGTTCTGTAACCATGAACAGAAATAAACAGAT
>TU1579597
tgtcaacagtgaagaggcgacaccGGGATGttagccttctaggcagagttgcaaagaaaaagccacacctcagactggtcaataaaaaggaaagcatcccagagtcgcctcttcactgttgactttgagactggtgttattcgggtaccatttaatgaagctgccagttgagaacttgtgaggtgtctgtttctcaaactagacactctaatgtacatgTCCTCTTGATAAATGATGCACTTGaattaacacaacgtgccattggaacacaggagtgatggttgctgataatgggcctctgtagatattccattacaaatcagccatttccagctataatagtcatttacaacattgacaatgtctacactgtatttatgatcaatttgatgttattttaatggacaaaaaatgtgatttttctttaaaaaagcaggacatttctaagtggccccaaacttttgagtggtagtgtatgtatagCCTCTATTGGGATATAATTATTTGTGTAGCCTCCTAATCTCATTTTCTTCCCACTGGCCCAAACATTACTTTTTGGTCTTATTTACCATTGTATTGTACATTGCCAGATTTGTGCACTAAAAGCTGTCTGTAATAAATGCTGTATCTAAAGTGTGTGTGGTGAATATACAATTTGTAGTATTCATCATTGTGTTTATGTGCAGGTTTGAGTTATGACCTGAGTTTGTTTTAACAGTGTGGTAATGGCCATACTTCAGTGGTCAATATGTGTATATCTAATGGATGACAGGCAATGTGAAGAAGAAGCCAACTCTGTTTGTCAGGAGAAGCGTCTACTGTATAAATGAATGAATTTGC
>TU1579596
tgtcaacagtgaagaggcgacaccGGGATGttagccttctaggcagagttgcaaagaaaaagccacacctcagactggtcaataaaaaggaaagcatcccagagtcgcctcttcactgttgactttgagactggtgttattcgggtaccatttaatgaagctgccagttgagaacttgtgaggtgtctgtttctcaaactagacactctaatgtacatgTCCTCTTGATAAATGATGCACTTGaattaacacaacgtgccattggaacacaggagtgatggttgctgataatgggcctctgtagatattccattacaaatcagccatttccagctataatagtcatttacaacattgacaatgtctacactgtatttatgatcaatttgatgttattttaatggacaaaaaatgtgatttttctttaaaaaagcaggacatttctaagtggccccaaacttttgagtggtagtgtatgtatagCCTCTATTGGGATATAATTATTTGTGTAGCCTCCTAATCTCATTTTCTTCCCACTGGCCCAAACATTACTTTTTGGTCTTATTTACCATTGTATTGTACATTGCCAGATTTGTGCACTAAAAGCTGTCTGTAATAAATGCTGTATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947111.1 False 2342 mRNA 0.42 4 48343132 48347793
TU1579597 False 840 lncRNA 0.38 1 48347046 48347885
TU1579596 True 629 lncRNA 0.38 1 48347257 48347885

Neighbor

gene id symbol gene type direction distance location
LOC110492165 LOC106567279 coding downstream 115 48333920 ~ 48343017 (-)
LOC110492160 frmd4b coding downstream 70843 48242058 ~ 48272289 (-)
LOC110492161 lmod3 coding downstream 101636 48232398 ~ 48241496 (-)
LOC110492159 uba3 coding downstream 112921 48220758 ~ 48230211 (-)
LOC118939552 NA coding downstream 130912 48208293 ~ 48212220 (-)
LOC110492168 foxp1 coding upstream 674 48348467 ~ 48371945 (-)
LOC110492170 eif4e3 coding upstream 24244 48372037 ~ 48383460 (-)
LOC110492173 LOC106567285 coding upstream 135677 48483470 ~ 48521507 (-)
LOC110492176 LOC106567286 coding upstream 177249 48525042 ~ 48533176 (-)
LOC110491085 NA coding upstream 199387 48547180 ~ 48548167 (-)
G1382938 mitf non-coding downstream 11207 48327946 ~ 48331925 (-)
G1382937 NA non-coding downstream 15550 48327177 ~ 48327582 (-)
G1382935 NA non-coding downstream 16760 48326062 ~ 48326372 (-)
G1382933 mitf non-coding downstream 18994 48323819 ~ 48324138 (-)
G1382925 LOC106567283 non-coding upstream 43186 48390979 ~ 48393246 (-)
G1382997 NA non-coding upstream 99426 48447219 ~ 48447883 (-)
G1383073 NA non-coding upstream 248685 48596478 ~ 48614348 (-)
LOC110492180 LOC105022745 non-coding upstream 686538 49034329 ~ 49040181 (-)
G1383391 NA non-coding upstream 711055 49058848 ~ 49059230 (-)
G1382894 mitf other downstream 30174 48282213 ~ 48312958 (-)
G1382721 NA other downstream 396910 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 894267 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 1253602 47081938 ~ 47089563 (-)
G1381036 NA other downstream 1463986 46878611 ~ 46879146 (-)
LOC110492187 LOC106936674 other upstream 836515 49179653 ~ 49196706 (-)
LOC110491086 LOC106566907 other upstream 1255325 49576512 ~ 49719539 (-)
G1384875 NA other upstream 1717028 50064821 ~ 50065817 (-)
G1385645 NA other upstream 2707838 51055631 ~ 51056061 (-)
G1385888 NA other upstream 2742852 51090645 ~ 51128648 (-)

Expression


Co-expression Network