LOC110492177 (LOC106567287)


Basic Information

Item Value
gene id LOC110492177
gene name LOC106567287
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 48650173 ~ 48970488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947132.1
GAGTCAAGAGAGGCGAGTTCATTAGCATGCACATAGACGCTGTGGCATTTTGGCAGGACGACAAAACAATTCTCCTGAAATGTTTCTCGGGGAATTAGAAAGCCTTGGCTTGTTTGGTATCCAATGGACGTATGCTGGAGCTCGCTCACTTTCTTTCTGCTGCTGGATACCAATGCCTCAAGGCAAGGCAAGGAGGTGTGTGCATCTCTCAGTCAGTGAAGATACCACGGGAACCTAAGCTTGGAGAGTTTGACAAGATAATCCGTAGACTGTCAGAGAACCCCAACGCCCGGGTTGTCATTCTCTTTGCCAACGAAGATGACATTAGGCGGATTCTTCAAGCAGCTAAGAAggctaaccagacaggacattttATATGGGTGGGGTCAGACAGCTGGGGTTCTAAGATCTCCCCCATCCTGAACCAGGAGGAGATGGCAGATGGGGCTGTCACGATCCTACCTAAACGGCAGCCTATCCGAGGGTTTGATCGCTACTTCATCAGCAGAACTTTGGACAACAACAGAAGAAATATTTGGTTTGCAGAGTTCTGGGAAAACAACTTCCAGTGCAAACTCAGTCGACACGCTCTGAAGAAAGGATCCGGCATCAAAAAGTGCACAAACCACGAGCGGATCGGGAAGGACTCGTCCTATGAGCAGGAGGGGAAGGTCCAGTTTGTGGTTGATGCCGTTTACGCCATGGCTCACGCGTTACACAACATGCATAAGGAGCTCTGTCCAGGGAAAGTGGGCCTCTGCTCTAAAATGGAAACCATCAATGGAACCATGTTGCTCAAGTTCATTCGCAACGTCAACTTTACAGGAATTGCGGGCACTCCAGTGATCTTCAATGTGAACGGAGATGCCCCTGGTCGCTATGAGATCTATCAGTACCAGATGAAACACAACACCACAGAATACAAGATCATTGGCCACTGGGCAGACCAGCTCCATTTAGAAACTAAGGAGATGCGGTGGCCTGGTGGGACATGGCAGGTACCCCAGTCTATCTGCAGTCAGCCCTGTCATCCTGGGGAGAGGAAAAAAACAGTGAAGGGTGTCCCCTGCTGTTGGCACTGTGAGCGCTGTGATGGCTACCAGTACCAGGCCGACACCTACAGCTGTAAGATGTGCCGCTTTGACCTGCGGCCCAACGAGAATCACACCGCCTGTGAGGCCATCCCGATCATCAAGCTGGAGTGGAGCTCCCCCTGGGCCGTCATCCCCGTCCTCATCGCTGTGCTGGGCATCATGGCCACCATGTTTGTGGTGGCCACCTTCATCCGCTACAATGACACCCCCATTGTGAAGGCGTCAGGGCGCGAACTCAGCTATGTGCTGTTGACGGGCATCTTCCTGTGCTACGCCACCACTTTCCTCATGATCTCAGCGCCTGACGTTGGAATCTGTTCCCTCCGACGGATCTTCCTAGGTCTGGGAATGAGTATTAGCTATGCAGCGCTGCTCACCAAGACCAACCGTATCTATCGCATCTTTGAGCAGGGCAAGATGTCAGTGAGCGCCCCCAGGTTCATCTCCCCAGCCTCCCAGCTGGTTATCACCTTCAGCCTGATCTCAGTGCAGCTCCTGGGGGTGTGCATCTGGTTCGGTGTGGACCCATCTCAGGCTATCATCGACTATGAGGACCAGCGCACGTCCAACCCGGACATGTCCCGTGGCGTGCTCAAATGTGACATCTCAGACCTTTCACTGATCTGCCTGCTTGGCTTCAGCATGCTGCTCATGGTCACCTGTACAGTGTATGCCATCAAGACCCGGGGGGTGCCAGAGACCTTCAATGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATCGTCTGGCTAGCTTTCATACCCATCTTCTTTGGGACTTCACACTCAACAGAAAAGatGTACATCCAGACCACGACTCTGACCATTTCCGTGAGCCTGAGTGCCTCTGTGTCTCTGGGGATGCTCTACATGCCCAAGGTCTACGTGGTCCTCTTCCACCCGGAGCAGAATGTGCCCAAGCGCAAGCGCAGCCTCAAGGCTGTGGTCACCGCGGCCACCATGTCCAACAAGTTCCCCACTAAGGGCGGCCTCCGGCCCAATGGAGAAGCCAAGTCTGAGCTGTGTGAAAGCCTGGAGACACAAGCATTGGCCTCCAAGCAGACATACATCAGCTACAGTAACCATGCCATCTAAGAAACAGACAGTGGAGACCCGGCTCAGAAGCTACGACCTGCGTGTGGAATGAACGAACACCAGAACTGGAGCACCAAGATGCAAAAGCAGTGGGACATGGGGAGAAAGGAGAATAATCATTCAACTTATTGAACGGGTGTCACTATTTTCAAGAGGACCAGTCAATGCAAGGATATTCAATGCCAAACAAAAGCAGTGGGGAGGCTCCTAGTGGGGCGGGGAGGTGCAGATTTCAGGCAGATATGACAGTGATGTCTCCCCATCCCCTTTGTGACATGTCACAGAGACATCAGACAGTCACATTTCCAAATTAAGTCAGTGTTTTCCTTCTGGAGTTTATAGAACAGCTTTTCTCTTCTGGTGTTTTGTCTGATGAACTCCCTGGCTAACTCCCTGACAAACTCCCTGTTCTGTAGTGAATTGAGTTTTCTCTCTGTGTGCAGCGGTGTTGTATCTCTCTCTACCAGTGGTAATGTGCAATTATTTGCTTCCCCTTCTTCTCTGTCCTTTCCAATGAGGGTGAAAGGCTGAACACAATATCTAATTTGTCAATAAGACCAATCTGTCAAAAGAAGTATGTATAAGCAGATGAAAAAGCATGTTATTGCTGTGGGTTTGTCTTCGTTCAAGCCCCCAAAAAACAGAATATTAACCCTCAGGCTCTGTAGCATTTACATTATGTTGTCATCATTTTAATGAAGGTCATAGTTGTGAAACAGAGAAAACAAATATGCAACTTTCCAACATTGGAATATTCATTTGTTACAGCATGGGTCCAGTAAATGTTTCCTTACCATCGTGGACAGTACATTAATATATCAGTGGGTTTTCCCAGATGATGGCTATACCATATCTGACACCATCTTTATGGTCCTTGTGTACAGTCCTAGAGCATGCCTGTGGGAGCATAATATGTACCGTGCTGTGTTGTCAAAATCTATGGAATGCAACATGTGAGAGGATTGCGGTTCAACAGTCCCAGTGGCGTTATCATTGTGGACTATTACACACATGGTACTTTTTTGCAGATGAACGGAAGATAAAAAATACGAGAAACAGCCATAAGAATTAGCTAACAAGTAAAAGGATTGTATGTACTCCACATCCTATTTTTCTGTGAAATACAGCCTCAACACTACAGCCCATAGACAGCTGAAGGGCAATGCTTCACTGCATCCAACCTGGCATCTTTACATGTAAGATGATCCTTTCATGGCCTTGTTCCATTAGAATTTCTGAAGTTCCATCTCAACATGTGAAGAATTTGGAATCTGTACCAGAAATGTCTAACATAACATATAGGCATTTATTGGCATGTTAGGTAATGGTACAAAACACACTCTTTGGAACATCAGCAGTGTTCACCATACTTCGTTATGTTATTGAATCTTTTGCCAGGCACCTGTGATTTCAGTAAAAGCGCTTGTTGCTTTCATGTTACTCAGAGAGAGGAAGTCGCTCCAAATCCACAAGTGAATTAGCTTTAAGAGTAAGCCTATCCCTGCCAGGTCAACAGAGGAAACCACTGTGTAAAAATAACAACAAACACAGCTCTCATCTCCTTCTGTATTGTGTCCTGGATGCAATGTTGTTAGTCATACTGTGTTTTTAGTCTAATTTCATCATTCCATTTCTGGAAATGTACTCGCAATTAATGTTATAGTATCAAAGCCAGTCACTTAATATAGTAAGAAATAGATTGGCAAGATGCTGTGTCACAGCCATTCATATCATGATGTGAATAGCCATTGGAGAAATGATCCAATAAGCTCCAGAACGAAaactactgtaaaaaaaaaaaaaaaaaaaaaa
>XM_036947131.1
CAGTGTAGGAGGGGGTGGCTTTGTAAGCTACAGTCACATAAAGTAGAAAATAACCAGCGCAGGAACCCTTTCAGCACCACTCGCCAATGGACAGCGGTTTCAGCACGCAGAGTCATTGGGCAGTTTGAGAAGTGACAGGATTTGTTAGGAGTCTCGAGACCAGTGGGATTTGGACTACCGAGCCATCAAGACAGGTCCTGGAGGTTATATTCTCGTAATTCTTCGGCACTGCTATTGTATCCCCCACTACAGGACTAAACATATGCCTTTGTATCCTTACACCTGTTTTTCTTCAACTCGGGTTCGAACCAAAGAGGAGTTCTCTGGAAATAATCCGTATTTCTGCACATTCTGAAAGACACAGTCGTTGAAAATAGAAATTTAGAGTGGACGGTATCAATTCAACTTCTTCATAAACGAAATTTTCTGAAATAAAATCCAGTGGGTTTCTTTCAAAGAAGTCTGCTGTCTTTCTGAGCTCGAGGAGGGAGGCCATGTTTCAGTACCTGCAGGTCTGCTCGGGCTGACTGAGGACTTTCTGCCTGCTCCAGGGGGGTGAGCCAGAGAGAAGCTAAACGCCCCTGACTGGCTCTGGAGGAGTGGAGAAAAGAAGGCTTATCTCCCACCTTTGTTCTCTCTAATGCCCCTTGAGATGGCTCTCCACGGACTCACTCCCACCTCAGTCAAAACTGTTTAGTAACTCCACACCATCTCCATACCccaactgcagggagagagaataTCACACAAggaagtggagaaagagagagagaaagctaatTAGTATTACTGAGATAGTGTCAAAGCTGAGAGACATGAGAAGAGACATCTGAAGAGAGTTCTGTGCTCTGAGGGATATTGCTGCTAACCTTTAGGACATTTGTTTGTGGTATTTTTTTAAAAGGGACTCATTTTAGTTGGTTGCGGGTTTAACTTAGCCTTCCATCATGACTCTTCTGGGAAGCTGTATGAAGAGGGGGCAGACTGACTGCCACAGGAGTGGTCCGGCTGGGCCCTGTCAGGTCCTGCTCCTGACCTGCTGTATCCTGGTAGTCCTGGGGGCCAAGCCAAAAACACCTGGCCACACACACCTCAACTCCATCCGTATTGACGGGGATATCTCACTGGGTGGGCTCTTTCCTGTACACGCCAGAGGCAACAATGGGAAAGCCTGTGGGGAGCTGAAGAAGGAAAAGGGGATCCACAGACTGGAGGCCATGCTGTTCGCCTTGGACCGCATCAACAACGACCACGAGCTGCTGCCCAACATCACTCTGGGGGCCAGGATCCTGGACACCTGTTCACGGGACACCCACGCCCTGGAGCAGTCGCTCACCTTTGTCCAGGCGCTCATCGAGAAGGACGGGACGGACATCAAATGCCTGAGTGGTGGGCCGCCCATCATCACCAAGCCTGAGAGGGTGGTGGGCGTCATCGGGGCCTCCGCCAGCTCCGTGTCAATCATGGTGGCCAACATCCTGCGCCTCTTCAGGATCCCCCAGGTGAGTTATGCCTCCACGGCTCCGGAGCTGAGCGATAACACGCGCTATGACTTCTTCTCCCGCGTCGTGCCTCCGGACACCTACCAGGCACAGGCAATGGTGGACATAGTCAAAGCCATGAGCTGGAATTATGTCTCCACAGTAGCATCGGAGGGCAACTATGGAGAGAGTGGTGTGGACGCCTTCATACAGAAGTCCCGCGAAGACGGAGGTGTGTGCATCTCTCAGTCAGTGAAGATACCACGGGAACCTAAGCTTGGAGAGTTTGACAAGATAATCCGTAGACTGTCAGAGAACCCCAACGCCCGGGTTGTCATTCTCTTTGCCAACGAAGATGACATTAGGCGGATTCTTCAAGCAGCTAAGAAggctaaccagacaggacattttATATGGGTGGGGTCAGACAGCTGGGGTTCTAAGATCTCCCCCATCCTGAACCAGGAGGAGATGGCAGATGGGGCTGTCACGATCCTACCTAAACGGCAGCCTATCCGAGGGTTTGATCGCTACTTCATCAGCAGAACTTTGGACAACAACAGAAGAAATATTTGGTTTGCAGAGTTCTGGGAAAACAACTTCCAGTGCAAACTCAGTCGACACGCTCTGAAGAAAGGATCCGGCATCAAAAAGTGCACAAACCACGAGCGGATCGGGAAGGACTCGTCCTATGAGCAGGAGGGGAAGGTCCAGTTTGTGGTTGATGCCGTTTACGCCATGGCTCACGCGTTACACAACATGCATAAGGAGCTCTGTCCAGGGAAAGTGGGCCTCTGCTCTAAAATGGAAACCATCAATGGAACCATGTTGCTCAAGTTCATTCGCAACGTCAACTTTACAGGAATTGCGGGCACTCCAGTGATCTTCAATGTGAACGGAGATGCCCCTGGTCGCTATGAGATCTATCAGTACCAGATGAAACACAACACCACAGAATACAAGATCATTGGCCACTGGGCAGACCAGCTCCATTTAGAAACTAAGGAGATGCGGTGGCCTGGTGGGACATGGCAGGTACCCCAGTCTATCTGCAGTCAGCCCTGTCATCCTGGGGAGAGGAAAAAAACAGTGAAGGGTGTCCCCTGCTGTTGGCACTGTGAGCGCTGTGATGGCTACCAGTACCAGGCCGACACCTACAGCTGTAAGATGTGCCGCTTTGACCTGCGGCCCAACGAGAATCACACCGCCTGTGAGGCCATCCCGATCATCAAGCTGGAGTGGAGCTCCCCCTGGGCCGTCATCCCCGTCCTCATCGCTGTGCTGGGCATCATGGCCACCATGTTTGTGGTGGCCACCTTCATCCGCTACAATGACACCCCCATTGTGAAGGCGTCAGGGCGCGAACTCAGCTATGTGCTGTTGACGGGCATCTTCCTGTGCTACGCCACCACTTTCCTCATGATCTCAGCGCCTGACGTTGGAATCTGTTCCCTCCGACGGATCTTCCTAGGTCTGGGAATGAGTATTAGCTATGCAGCGCTGCTCACCAAGACCAACCGTATCTATCGCATCTTTGAGCAGGGCAAGATGTCAGTGAGCGCCCCCAGGTTCATCTCCCCAGCCTCCCAGCTGGTTATCACCTTCAGCCTGATCTCAGTGCAGCTCCTGGGGGTGTGCATCTGGTTCGGTGTGGACCCATCTCAGGCTATCATCGACTATGAGGACCAGCGCACGTCCAACCCGGACATGTCCCGTGGCGTGCTCAAATGTGACATCTCAGACCTTTCACTGATCTGCCTGCTTGGCTTCAGCATGCTGCTCATGGTCACCTGTACAGTGTATGCCATCAAGACCCGGGGGGTGCCAGAGACCTTCAATGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATCGTCTGGCTAGCTTTCATACCCATCTTCTTTGGGACTTCACACTCAACAGAAAAGatGTACATCCAGACCACGACTCTGACCATTTCCGTGAGCCTGAGTGCCTCTGTGTCTCTGGGGATGCTCTACATGCCCAAGGTCTACGTGGTCCTCTTCCACCCGGAGCAGAATGTGCCCAAGCGCAAGCGCAGCCTCAAGGCTGTGGTCACCGCGGCCACCATGTCCAACAAGTTCCCCACTAAGGGCGGCCTCCGGCCCAATGGAGAAGCCAAGTCTGAGCTGTGTGAAAGCCTGGAGACACAAGCATTGGCCTCCAAGCAGACATACATCAGCTACAGTAACCATGCCATCTAAGAAACAGACAGTGGAGACCCGGCTCAGAAGCTACGACCTGCGTGTGGAATGAACGAACACCAGAACTGGAGCACCAAGATGCAAAAGCAGTGGGACATGGGGAGAAAGGAGAATAATCATTCAACTTATTGAACGGGTGTCACTATTTTCAAGAGGACCAGTCAATGCAAGGATATTCAATGCCAAACAAAAGCAGTGGGGAGGCTCCTAGTGGGGCGGGGAGGTGCAGATTTCAGGCAGATATGACAGTGATGTCTCCCCATCCCCTTTGTGACATGTCACAGAGACATCAGACAGTCACATTTCCAAATTAAGTCAGTGTTTTCCTTCTGGAGTTTATAGAACAGCTTTTCTCTTCTGGTGTTTTGTCTGATGAACTCCCTGGCTAACTCCCTGACAAACTCCCTGTTCTGTAGTGAATTGAGTTTTCTCTCTGTGTGCAGCGGTGTTGTATCTCTCTCTACCAGTGGTAATGTGCAATTATTTGCTTCCCCTTCTTCTCTGTCCTTTCCAATGAGGGTGAAAGGCTGAACACAATATCTAATTTGTCAATAAGACCAATCTGTCAAAAGAAGTATGTATAAGCAGATGAAAAAGCATGTTATTGCTGTGGGTTTGTCTTCGTTCAAGCCCCCAAAAAACAGAATATTAACCCTCAGGCTCTGTAGCATTTACATTATGTTGTCATCATTTTAATGAAGGTCATAGTTGTGAAACAGAGAAAACAAATATGCAACTTTCCAACATTGGAATATTCATTTGTTACAGCATGGGTCCAGTAAATGTTTCCTTACCATCGTGGACAGTACATTAATATATCAGTGGGTTTTCCCAGATGATGGCTATACCATATCTGACACCATCTTTATGGTCCTTGTGTACAGTCCTAGAGCATGCCTGTGGGAGCATAATATGTACCGTGCTGTGTTGTCAAAATCTATGGAATGCAACATGTGAGAGGATTGCGGTTCAACAGTCCCAGTGGCGTTATCATTGTGGACTATTACACACATGGTACTTTTTTGCAGATGAACGGAAGATAAAAAATACGAGAAACAGCCATAAGAATTAGCTAACAAGTAAAAGGATTGTATGTACTCCACATCCTATTTTTCTGTGAAATACAGCCTCAACACTACAGCCCATAGACAGCTGAAGGGCAATGCTTCACTGCATCCAACCTGGCATCTTTACATGTAAGATGATCCTTTCATGGCCTTGTTCCATTAGAATTTCTGAAGTTCCATCTCAACATGTGAAGAATTTGGAATCTGTACCAGAAATGTCTAACATAACATATAGGCATTTATTGGCATGTTAGGTAATGGTACAAAACACACTCTTTGGAACATCAGCAGTGTTCACCATACTTCGTTATGTTATTGAATCTTTTGCCAGGCACCTGTGATTTCAGTAAAAGCGCTTGTTGCTTTCATGTTACTCAGAGAGAGGAAGTCGCTCCAAATCCACAAGTGAATTAGCTTTAAGAGTAAGCCTATCCCTGCCAGGTCAACAGAGGAAACCACTGTGTAAAAATAACAACAAACACAGCTCTCATCTCCTTCTGTATTGTGTCCTGGATGCAATGTTGTTAGTCATACTGTGTTTTTAGTCTAATTTCATCATTCCATTTCTGGAAATGTACTCGCAATTAATGTTATAGTATCAAAGCCAGTCACTTAATATAGTAAGAAATAGATTGGCAAGATGCTGTGTCACAGCCATTCATATCATGATGTGAATAGCCATTGGAGAAATGATCCAATAAGCTCCAGAACGAAaactactgtaaaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
metabotropic glutamate receptor 4-like

GO: NA

KEGG:

id description
K04607 GRM4; metabotropic glutamate receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947132.1 False 4007 mRNA 0.47 9 48650173 48725394
XM_036947131.1 True 5525 mRNA 0.49 11 48650173 48970488

Neighbor

gene id symbol gene type direction distance location
LOC110491085 NA coding downstream 102006 48547180 ~ 48548167 (-)
LOC110492176 LOC106567286 coding downstream 116997 48525042 ~ 48533176 (-)
LOC110492173 LOC106567285 coding downstream 128666 48483470 ~ 48521507 (-)
LOC110492170 eif4e3 coding downstream 266713 48372037 ~ 48383460 (-)
LOC110492168 foxp1 coding downstream 278228 48348467 ~ 48371945 (-)
LOC110492180 LOC105022745 coding upstream 63841 49034329 ~ 49040181 (-)
LOC110492178 LOC106567289 coding upstream 73283 49043771 ~ 49047518 (-)
LOC110492190 LOC106567293 coding upstream 106079 49076567 ~ 49082834 (-)
LOC110492186 LOC106566918 coding upstream 176329 49146817 ~ 49159851 (-)
LOC110492187 LOC106936674 coding upstream 209165 49179653 ~ 49196706 (-)
G1383073 NA non-coding downstream 35825 48596478 ~ 48614348 (-)
G1382997 NA non-coding downstream 202290 48447219 ~ 48447883 (-)
G1382925 LOC106567283 non-coding downstream 256927 48390979 ~ 48393246 (-)
LOC110492167 NA non-coding downstream 302288 48343132 ~ 48347885 (-)
G1382938 mitf non-coding downstream 318248 48327946 ~ 48331925 (-)
G1383391 NA non-coding upstream 88360 49058848 ~ 49059230 (-)
G1383394 NA non-coding upstream 90966 49061454 ~ 49061684 (-)
G1383396 NA non-coding upstream 93714 49064202 ~ 49065411 (-)
G1383437 NA non-coding upstream 171927 49142415 ~ 49146676 (-)
G1382894 mitf other downstream 337215 48282213 ~ 48312958 (-)
G1382721 NA other downstream 703951 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 1201308 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 1560643 47081938 ~ 47089563 (-)
G1381036 NA other downstream 1771027 46878611 ~ 46879146 (-)
LOC110491086 LOC106566907 other upstream 632630 49576512 ~ 49719539 (-)
G1384875 NA other upstream 1094333 50064821 ~ 50065817 (-)
G1385645 NA other upstream 2085143 51055631 ~ 51056061 (-)
G1385888 NA other upstream 2120157 51090645 ~ 51128648 (-)

Expression


Co-expression Network