LOC110492180 (LOC105022745)


Basic Information

Item Value
gene id LOC110492180
gene name LOC105022745
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49034329 ~ 49040181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566267.2
TAAAGTTTGCATACTGTTTTACCAACTTtaggtgtatatactgtattctatataactactgctgtacgcACCTTTTCtatccatatactgtccatactgtctttTCACACCATTAtatttatatacattatatatttttattttctgtTCTCTGACTTTGCTCATTATGTTTCTCAATTTTCTGGATTATGtgcgtatttatttatttgtattgctaggtatttCTGCACTGTTGgggctagaaacacaagcatttttctGCACCTGCTATAACATCTCTGTAcctgaccaataaactttgatttgagctGCTCAAAGTGACAACCATTTGAGAGCTGCGCGCTCTTGCTACCCATCGGATTATCCTGCTCAAACTAGGCTGAAGCGGGCCACTGATGTGGATGATTGACTCGCCCGGAGGGTTTCCAAAACCTCCCTTGGCCAGCGGGCAGCCCTGCATATTTCACACTGATTTGTGAAGGAAGAGAGACCATGTGGAAGTCACATGAACAACAAGGATGAGACAAAAACAACTGGGAGTTAACTTGTTGAGGAGAGGACTGCTGCCGCCCAACTTCTCCCTCCAACTGGGGATTTGCTGCCTGTCCCACCCTCCACCCAAACATATGCAATGAACAGCACTACTCAGCCCCCTGCCATCATAGACGGGGATGTGGCAGTCAGTTccgtgttggtaccattcttccTCATCACCTTTATCGGGATAGCTGCAGCTGTGGTGATGTATGTGCGCCGGAAGAGAAGAATTGACAGGCTCCGGCACCAGTTGCTTCCAGTCTATACCTACGACCCCTCAGAAGAATTACATGAAGTTGAACAGGAAATGCTGTGGAAAGAGGAAGATACTAAGGTGGTGAAGGGCTGGGCACGGTCCTACCAGCAGCAACGTCCCCTGTTGATGAAAGATGCCCATGCATGAGTGTGTTGGAGCAGGACATCGATCTGTGCCATCCTACAGATCAGTGGAGTTAACCCTTGATATGCCAGATTTGTCAATCATTAAACACAAAGGGTTTTTTAGGAAAAGCATGATAAATGGGAACAGCCTGTCATACCTTTGCATCATCATCTTTGTCATTATCATCCATCAGTCATCACCATCTCTGTTGGAGCATTTACTTTGTACAGTGTCAGCCTCTAAGCTAAGGGGAGGTTGGTTATTATGTGAACCTCTGAAGCCATGCCCGTTTTCACGAAAGCCATACCCTAAACCACGACACGTTGGCTAACTACTAGTggacattatttatttgagactatttattcattttttttaactgtgtttgtgtgtatgattATGTGGGTGTTACTGAAACATTTGCCTTAATGTCCATTGTTACTGTTTTAAGTAGTACTATACCAGTGAGATTAGCAAAGCCTTGACCTTGGGTGGGATACTTCCAGTTGTACTACTAGTTTTGGTGGTGTAAAATTAGGTTACTATGTCCCTCACTATTCAATGTCATAAGTTACACAGATGTGCAGTCAATCAATTTGAGTCCTGCAATTTTCCTTGTTTGTTGCACTGTGAATACCATTATCAAATCAACCAAAGTAATACCTCCTTCTCGTCATCATCCAGATGTGTGATGATAAAACGGTGGTGAAGAGAGAGCAAGATtgtttcctgttctctctcttttgtttcaCTTGAGTTGTTTCAAACATCACATTCAGAAATAGgatgtgcagagagagagagaaccctctGGCTGTATCTGGGATGTCACACAATGGCCAATGAATGTAGATAGTGAACCAGCCTCCCCTACCCCACCCACTCCTCTCCATTATTTAGCTGTGACTACTGCCCTAAAAATGTCCTGTCTGGAAGACAGGGCAACAGGATTATTGTTCTTCTAGCAGAAGAACGTCATAGGCCTGACTGTATGCAGGAAACCTCATGTGTCGTTAAAGAAATGAGTGAACAGTGATTCATCCTTGTATAATGTGCTCTAGTCTAGGTTACCCACCTTTCCTCCTTGCATTTGTGAATGTCATTCAGGATGAGAGATGAAGGCTCCCATTTGAAATCAATCATCTTATCAGCGCATGTATATGTATGTAGGAGTCCACTCAATAATTTAAACtgaaatatatataatgtatttcCATTCATTTGAATGTGGAATTTAGACTTTTGACTTGAATAATTGACTTTTTCCTGAATGCTAACAGCTACGTATTACGCTCCACTATTTATAAAGTCGGAGTTAATTCCCATGCACATTAAACATAATGCATTCGATTTAAAATGCGGAGTGTGTTCTGAAAAGAAAATACAGGATAGACTACTGATGAAAATACAAATTCTACATGTAATTTTGACATCACTTATCAAGATTTTGCACACTTGTTCAAGACTGATTTATATTTGTTGCTTTTCAATTGAAGCACTAATTGTCTGTCCATGAAGTAAACTTGTATGCATCTTAGTGAGAATATGGACTTTTTATAGATGGTCTGGATGTAAAGCAAAAATAAAATGGAAAGGAGTTCCTA
>XM_021566269.2
GTTACTCATTGCTTGCATTCATGGGTTGGCTTGTCAATCAAAGTGCTATTTTGTTTTCTTCCTGGTTAGCTTCACAGTGACAGAGGAGCAAAAACATTCGGCATATTTCACACTGATTTGTGAAGGAAGAGAGACCATGTGGAAGTCACATGAACAACAAGGATGAGACAAAAACAACTGGGAGTTAACTTGTTGAGGAGAGGACTGCTGCCGCCCAACTTCTCCCTCCAACTGGGGATTTGCTGCCTGTCCCACCCTCCACCCAAACATATGCAATGAACAGCACTACTCAGCCCCCTGCCATCATAGACGGGGATGTGGCAGTCAGTTccgtgttggtaccattcttccTCATCACCTTTATCGGGATAGCTGCAGCTGTGGTGATGTATGTGCGCCGGAAGAGAAGAATTGACAGGCTCCGGCACCAGTTGCTTCCAGTCTATACCTACGACCCCTCAGAAGAATTACATGAAGTTGAACAGGAAATGCTGTGGAAAGAGGAAGATACTAAGGTGGTGAAGGGCTGGGCACGGTCCTACCAGCAGCAACGTCCCCTGTTGATGAAAGATGCCCATGCATGAGTGTGTTGGAGCAGGACATCGATCTGTGCCATCCTACAGATCAGTGGAGTTAACCCTTGATATGCCAGATTTGTCAATCATTAAACACAAAGGGTTTTTTAGGAAAAGCATGATAAATGGGAACAGCCTGTCATACCTTTGCATCATCATCTTTGTCATTATCATCCATCAGTCATCACCATCTCTGTTGGAGCATTTACTTTGTACAGTGTCAGCCTCTAAGCTAAGGGGAGGTTGGTTATTATGTGAACCTCTGAAGCCATGCCCGTTTTCACGAAAGCCATACCCTAAACCACGACACGTTGGCTAACTACTAGTggacattatttatttgagactatttattcattttttttaactgtgtttgtgtgtatgattATGTGGGTGTTACTGAAACATTTGCCTTAATGTCCATTGTTACTGTTTTAAGTAGTACTATACCAGTGAGATTAGCAAAGCCTTGACCTTGGGTGGGATACTTCCAGTTGTACTACTAGTTTTGGTGGTGTAAAATTAGGTTACTATGTCCCTCACTATTCAATGTCATAAGTTACACAGATGTGCAGTCAATCAATTTGAGTCCTGCAATTTTCCTTGTTTGTTGCACTGTGAATACCATTATCAAATCAACCAAAGTAATACCTCCTTCTCGTCATCATCCAGATGTGTGATGATAAAACGGTGGTGAAGAGAGAGCAAGATtgtttcctgttctctctcttttgtttcaCTTGAGTTGTTTCAAACATCACATTCAGAAATAGgatgtgcagagagagagagaaccctctGGCTGTATCTGGGATGTCACACAATGGCCAATGAATGTAGATAGTGAACCAGCCTCCCCTACCCCACCCACTCCTCTCCATTATTTAGCTGTGACTACTGCCCTAAAAATGTCCTGTCTGGAAGACAGGGCAACAGGATTATTGTTCTTCTAGCAGAAGAACGTCATAGGCCTGACTGTATGCAGGAAACCTCATGTGTCGTTAAAGAAATGAGTGAACAGTGATTCATCCTTGTATAATGTGCTCTAGTCTAGGTTACCCACCTTTCCTCCTTGCATTTGTGAATGTCATTCAGGATGAGAGATGAAGGCTCCCATTTGAAATCAATCATCTTATCAGCGCATGTATATGTATGTAGGAGTCCACTCAATAATTTAAACtgaaatatatataatgtatttcCATTCATTTGAATGTGGAATTTAGACTTTTGACTTGAATAATTGACTTTTTCCTGAATGCTAACAGCTACGTATTACGCTCCACTATTTATAAAGTCGGAGTTAATTCCCATGCACATTAAACATAATGCATTCGATTTAAAATGCGGAGTGTGTTCTGAAAAGAAAATACAGGATAGACTACTGATGAAAATACAAATTCTACATGTAATTTTGACATCACTTATCAAGATTTTGCACACTTGTTCAAGACTGATTTATATTTGTTGCTTTTCAATTGAAGCACTAATTGTCTGTCCATGAAGTAAACTTGTATGCATCTTAGTGAGAATATGGACTTTTTATAGATGGTCTGGATGTAAAGCAAAAATAAAATGGAAAGGAGTTCCTA
>XM_021566266.2
GGCTGCTTCCATCCGTTACTCATTGCTTGCATTCATGGGTTGGCTTGTCAATCAAAGTGCTATTTTGTTTTCTTCCTGGTTAGCTTCACAGTGACAGAGGAGCAAAAACATTCGGCTGAAGCGGGCCACTGATGTGGATGATTGACTCGCCCGGAGGGTTTCCAAAACCTCCCTTGGCCAGCGGGCAGCCCTGCATATTTCACACTGATTTGTGAAGGAAGAGAGACCATGTGGAAGTCACATGAACAACAAGGATGAGACAAAAACAACTGGGAGTTAACTTGTTGAGGAGAGGACTGCTGCCGCCCAACTTCTCCCTCCAACTGGGGATTTGCTGCCTGTCCCACCCTCCACCCAAACATATGCAATGAACAGCACTACTCAGCCCCCTGCCATCATAGACGGGGATGTGGCAGTCAGTTccgtgttggtaccattcttccTCATCACCTTTATCGGGATAGCTGCAGCTGTGGTGATGTATGTGCGCCGGAAGAGAAGAATTGACAGGCTCCGGCACCAGTTGCTTCCAGTCTATACCTACGACCCCTCAGAAGAATTACATGAAGTTGAACAGGAAATGCTGTGGAAAGAGGAAGATACTAAGGTGGTGAAGGGCTGGGCACGGTCCTACCAGCAGCAACGTCCCCTGTTGATGAAAGATGCCCATGCATGAGTGTGTTGGAGCAGGACATCGATCTGTGCCATCCTACAGATCAGTGGAGTTAACCCTTGATATGCCAGATTTGTCAATCATTAAACACAAAGGGTTTTTTAGGAAAAGCATGATAAATGGGAACAGCCTGTCATACCTTTGCATCATCATCTTTGTCATTATCATCCATCAGTCATCACCATCTCTGTTGGAGCATTTACTTTGTACAGTGTCAGCCTCTAAGCTAAGGGGAGGTTGGTTATTATGTGAACCTCTGAAGCCATGCCCGTTTTCACGAAAGCCATACCCTAAACCACGACACGTTGGCTAACTACTAGTggacattatttatttgagactatttattcattttttttaactgtgtttgtgtgtatgattATGTGGGTGTTACTGAAACATTTGCCTTAATGTCCATTGTTACTGTTTTAAGTAGTACTATACCAGTGAGATTAGCAAAGCCTTGACCTTGGGTGGGATACTTCCAGTTGTACTACTAGTTTTGGTGGTGTAAAATTAGGTTACTATGTCCCTCACTATTCAATGTCATAAGTTACACAGATGTGCAGTCAATCAATTTGAGTCCTGCAATTTTCCTTGTTTGTTGCACTGTGAATACCATTATCAAATCAACCAAAGTAATACCTCCTTCTCGTCATCATCCAGATGTGTGATGATAAAACGGTGGTGAAGAGAGAGCAAGATtgtttcctgttctctctcttttgtttcaCTTGAGTTGTTTCAAACATCACATTCAGAAATAGgatgtgcagagagagagagaaccctctGGCTGTATCTGGGATGTCACACAATGGCCAATGAATGTAGATAGTGAACCAGCCTCCCCTACCCCACCCACTCCTCTCCATTATTTAGCTGTGACTACTGCCCTAAAAATGTCCTGTCTGGAAGACAGGGCAACAGGATTATTGTTCTTCTAGCAGAAGAACGTCATAGGCCTGACTGTATGCAGGAAACCTCATGTGTCGTTAAAGAAATGAGTGAACAGTGATTCATCCTTGTATAATGTGCTCTAGTCTAGGTTACCCACCTTTCCTCCTTGCATTTGTGAATGTCATTCAGGATGAGAGATGAAGGCTCCCATTTGAAATCAATCATCTTATCAGCGCATGTATATGTATGTAGGAGTCCACTCAATAATTTAAACtgaaatatatataatgtatttcCATTCATTTGAATGTGGAATTTAGACTTTTGACTTGAATAATTGACTTTTTCCTGAATGCTAACAGCTACGTATTACGCTCCACTATTTATAAAGTCGGAGTTAATTCCCATGCACATTAAACATAATGCATTCGATTTAAAATGCGGAGTGTGTTCTGAAAAGAAAATACAGGATAGACTACTGATGAAAATACAAATTCTACATGTAATTTTGACATCACTTATCAAGATTTTGCACACTTGTTCAAGACTGATTTATATTTGTTGCTTTTCAATTGAAGCACTAATTGTCTGTCCATGAAGTAAACTTGTATGCATCTTAGTGAGAATATGGACTTTTTATAGATGGTCTGGATGTAAAGCAAAAATAAAATGGAAAGGAGTTCCTA
>TU1580028
TCAATCAAAGTGCTATTTTGTTTTCTTCCTGGTTAGCTTCACAGTGACAGAGGAGCAAAAACATTCGGCTGAAGCGGGCCACTGATGTGGATGATTGACTCGCCCGGAGGGTTTCCAAAACCTCCCTTGGCCAGCGGGCAGCCCTGCATATTTCACACTGATTTGTGAAGGAAGAGAGACCATGTGGAAGTCACATGAACAACAAGGATGAGACAAAAACAACTGGGAGTTAACTTGTTGAGGAGAGGACTGCTGCCGCCCAACTTCTCCCTCCAACTGGGGATTTGCTGCCTGTCCCACCCTCCACCCAAACATATGCAATGAACAGCACTACTCAGCCCCCTGCCATCATAGACGGGGATGTGGCAGTCAGTTccgtgttggtaccattcttccTCATCACCTTTATCGGGATAGCTGCAGCTGTGGTGATGTATGTGCGCCGGAAGAGAAGAATTGACAGGCTCCGGCACCAGTTGCTTCCAGTCTATACCTACGACCCCTCAGAAGAATTACATGAAGTTGAACAGGAAATGCTGTGGAAAGAGGAAGATACTAAGGTGGTGAAGGGCTGGGCACGGTCCTACCAGCAGCAACGTCCCCTGTTGATGAAAGATGCCCATGCATGAGTGTGTTGGAGCAGGACATCGATCTGTGCCATCCTACAGATCAGTGGAGTTAACCCTTGATATGCCAGATTTGTCAATCATTAAACACAAAGGGTTTTTTAGGAAAAGCATGATAAATGGGAACAGCCTGTCATACCTTTGCATCATCATCTTTGTCATTATCATCCATCAGTCATCACCATCTCTGTTGGAGCATTTACTTTGTACAGTGTCAGCCTCTAAGCTAAGGGGAGGTTGGTTATTATGTGAACCTCTGAAGCCATGCCCGTTTTCACGAAAGCCATACCCTAAACCACGACACGTTGGCTAACTACTAGTggacattatttatttgagactatttattcattttttttaactgtgtttgtgtgtatgattATGTGGGTGTTACTGAAACATTTGCCTTAATGTCCATTGTTACTGTTTTAAGTAGTACTATACCAGTGAGATTAGCAAAGCCTTGACCTTGGGTGGGATACTTCCAGTTGTACTACTAGTTTTGGTGGTGTAAAATTAGGTTACTATGTCCCTCACTATTCAATGTCATAAGTTACACAGATGTGCAGTCAATCAATTTGAGTCCTGCAATTTTCCTTGTTTGTTGCACTGTGAATACCATTATCAAATCAACCAAAGTAATACCTCCTTCTCGTCATCATCCAGATGTGTGATGATAAAACGGTGGTGAAGAGAGAGCAAGATtgtttcctgttctctctcttttgtttcaCTTGAGTTGTTTCAAACATCACATTCAGAAATAGgatgtgcagagagagagagaaccctctGGCTGTATCTGGGATGTCACACAATGGCCAATGAATGTAGATAGTGAACCAGCCTCCCCTACCCCACCCACTCCTCTCCATTATTTAGCTGTGACTACTGCCCTAAAAATGTCCTGTCTGGAAGACAGGGCAACAGGATTATTGTTCTTCTAGCAGAAGAACGTCATAGGCCTGACTGTATGCAGGAAACCTCATGTGTCGTTAAAGAAATGAGTGAACAGTGATTCATCCTTGTATAATGTGCTCTAGTCTAGGTTACCCACCTTTCCTCCTTGCATTTGTGAATGTCATTCAGGATGAGAGATGAAGGCTCCCATTTGAAATCAATCATCTTATCAGCGCATGTATATGTATGTAGGAGTCCACTCAATAATTTAAACtgaaatatatataatgtatttcCATTCATTTGAATGTGGAATTTAGACTTTTGACTTGAATAATTGACTTTTTCCTGAATGCTAACAGCTACGTATTACGCTCCACTATTTATAAAGTCGGAGTTAATTCCCATGCACATTAAACATAATGCATTCGATTTAAAATGCGGAGTGTGTTCTGAAAAGAAAATACAGGATAGACTACTGATGAAAATACAAATTCTACATGTAATTTTGACATCACTTATCAAGATTTTGCACACTTGTTCAAGACTGATTTATATTTGTTGCTTTTCAATTGAAGCACTAATTGTCTGTCCATGAAGTAAACTTGTATGCATCTTAGTGAGAATATGGACTTTTTATAGATGGTCTGGATGTAAAGCAAAAATAAAATGGAAAGGAGTTCC

Function

NR:

description
PREDICTED: uncharacterized protein C3orf18 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566267.2 False 2523 mRNA 0.41 6 49034329 49038617
XM_021566269.2 False 2167 mRNA 0.41 5 49034329 49040167
XM_021566266.2 False 2259 mRNA 0.42 6 49034329 49040181
TU1580028 True 2210 lncRNA 0.42 6 49034331 49040134

Neighbor

gene id symbol gene type direction distance location
LOC110492177 LOC106567287 coding downstream 63841 48650173 ~ 48970488 (-)
LOC110491085 NA coding downstream 486162 48547180 ~ 48548167 (-)
LOC110492176 LOC106567286 coding downstream 501153 48525042 ~ 48533176 (-)
LOC110492173 LOC106567285 coding downstream 512822 48483470 ~ 48521507 (-)
LOC110492170 eif4e3 coding downstream 650869 48372037 ~ 48383460 (-)
LOC110492178 LOC106567289 coding upstream 3590 49043771 ~ 49047518 (-)
LOC110492190 LOC106567293 coding upstream 36386 49076567 ~ 49082834 (-)
LOC110492186 LOC106566918 coding upstream 106636 49146817 ~ 49159851 (-)
LOC110492187 LOC106936674 coding upstream 139472 49179653 ~ 49196706 (-)
LOC110492191 NA coding upstream 217856 49258037 ~ 49259636 (-)
G1383073 NA non-coding downstream 419981 48596478 ~ 48614348 (-)
G1382997 NA non-coding downstream 586446 48447219 ~ 48447883 (-)
G1382925 LOC106567283 non-coding downstream 641083 48390979 ~ 48393246 (-)
LOC110492167 NA non-coding downstream 686444 48343132 ~ 48347885 (-)
G1382938 mitf non-coding downstream 702404 48327946 ~ 48331925 (-)
G1383391 NA non-coding upstream 18667 49058848 ~ 49059230 (-)
G1383394 NA non-coding upstream 21273 49061454 ~ 49061684 (-)
G1383396 NA non-coding upstream 24021 49064202 ~ 49065411 (-)
G1383437 NA non-coding upstream 102234 49142415 ~ 49146676 (-)
G1382894 mitf other downstream 721371 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1088107 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 1585464 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 1944799 47081938 ~ 47089563 (-)
G1381036 NA other downstream 2155183 46878611 ~ 46879146 (-)
LOC110491086 LOC106566907 other upstream 562937 49576512 ~ 49719539 (-)
G1384875 NA other upstream 1024640 50064821 ~ 50065817 (-)
G1385645 NA other upstream 2015450 51055631 ~ 51056061 (-)
G1385888 NA other upstream 2050464 51090645 ~ 51128648 (-)

Expression


Co-expression Network