LOC110492178 (LOC106567289)


Basic Information

Item Value
gene id LOC110492178
gene name LOC106567289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49043771 ~ 49047518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566260.2
GTTCCTGGAAAGACGAGCGCTCCGTCAACAAGGAAAACTAGGAAAGGAAACAATGTAAAACGAAAAAACTCAGTGCCCAGACCCTAGACTGGTAAAGAGTACACACTGATAAACTGCCAGGTCGTGCATTTAGAGGGCAGCTCGTGACATATTGTGGATTGTTTGTTTAATATATCCCTGAAAATATCATACATCATGCAGGATACCAAACAAGTGCTCCAGATCTTTCGTTGCGCTGTGTGGCTCAAGGCTTCAGTTTGAATTGCTGAGGACATGAACTGTTTAACCAGTGCAGGAGTTAGGCTGCAGAAGATCTTCTGAAAAGGCTATTTCAAGGGTTAGACCTCTGGGGATTTCAAGAACGCACTTAGGCTCGTAAAGACTTTGGATGGGATACATACAGCTAGGTGTCTAAAACAGATTGAGAACCATCGGATGCCCAAATCCTCCGGTGTACCATTGCCTTCAGGCCCAATGATCATTCCGACCAGTGCCCCCGACAAATCCCTCAATGCAGTCTGGCTAAAGGACAACGAGCTGGAGCCACGTCGAATTGAGTCAAGAGAGGATGCCGCACGGTTGCAAAGAGCCATGTCTCACCTTCAGGAGTCAGGCTGGTACTGGGGCCCCCTGACAGCTGCTCAGGCTAAGCAGGTTCTGATTGATGCTCCAGAGGGGACTTTCCTTTTGCGGGACAGCTCCTACCAGGGCTACCTCTTCACCCTGTCTGTGAAGACCAGCCTTGGCCCCACACACCTCCGTATAGAGCACGCCACTGGCATGTTTGGCTTCGACTCTGTAATTGTGGCACGGCCACGACTGCGGCGGTTTGAGGGTGCTGTAGATCTGGTGCAGCACTATGCCCTGACTTACAAGCATCTGGCCACTCAAAATGACACAGGGGGGGGTAACCCTTCGGTCCCTACAGAGAAAACTCTGCAGCTCAAACTCACCCGGCCCCTCCATAAAGTTTCCCCTAGTCTCCAGCACCTTTGCCGCATCACTATCAACCAGCATTCTCGCTGTCACCAGGACTTACCCTTGCCTAGGCGGCTACGGGACTTTTTGCTGGAATACCCTTTTGTGTTGTAGGAAATGTTAATCAGATTTGATACTCCTGAATTGTACTGTTAAATCTGACAATTTCGATCAATGTCCTAATATAGTgctgaaaccccccccccccccccccccccactccataCTCATTTAATTTGTGGCCTTAATTGAGCCTAAAAAGGCAGGGAATGAGATGGAAGAGAAAGGTTAATGGGACTGACACAAAGGGCAGTACAGACACCAGAGAAGGACTAGCCTTAACTGTCACATCCAGACCGTGTCACAGTCTGAGCGGTGTCACAGTCTCCAGGAGCCAATTAGAGCTGGGGCTTcatccaaaatggcactctattccagtatatatacagtacaagctGGTTCCTAGATTACAGAATGTACCTACTTGGGGTATATTATTATTTCCTGAAATATCCCACCTTATGTTAGTTAAACTAAATCAACAATTGAGAGTACTGAAATGGAATGCTGAAAAAATAACATACAAAAGAAAATAGATAAGAGCTTTGTTATTGCTTTATAAACGGTATTGAAGAAAGATTATTGCATTAGAAATGGACCACATTAATTAAAAACACAATACACTATTTCACCTCATACCATGGCTTTTATTGTGGGGGATTTTTGATTAATATGAATCATAAAGATTTCCGGACCATAGTCTTGCTGCAAAAGTGGCTGATCTGAGTGTCCTATTCATTCCTATTTTTTCTGAATCCTGGAGTGTAACTTGGTCATTATCAAGGTTGTGTAGTTTCAGCTGATCTCactaacgttttttttttttaaagactgtcATTGTGGTAATCAATTTCAGGTCCAACTTAGGTTTCCTTATAGATCTTTGAGATGCTGAAATAACCATCTCTTGAACTGAGGAATAACACAATAACAAACAGCAAAATGCTGCTTGTGAAGCTTCCTCATATCCTTCAACACTGCCTTATGTGTAAATGAGTGTGCTTTCTATCATGGTTTATTTGCGACCATTTTGCAGAGCTATTTGGATTTGACATTGATCTGTTTTCATGTGTGACAGTAGCCAAACTCCATTAATATTGTTGTTCTTTTTTATGATGATCACTGATCTATGTCTCAAGGTCGGGGGAATTGGCCAATTGAAACAATATAAGAATGCAATGCGAGAGAGTGTGGCATGTTTTCTCTTTTTTTGTGGTTATACTTTGGTTAAGTTGTTTAACAGGGAGCATTAAAATCTTGtattggtaaaaaaaataattactgTCTCTGTTTGTTTATAATTTTGGACTTGAGGGAATATGATTAAATATAGAATTGTTGTTTTTAGTCATTAGACTGAATACGTTCCAGAACATATTAGTTACTATAAGCCTCCTATGGGAGGCTACAATAAACCCAAATGAACCTAGAAGATATGCTAAATTAATGGACCATTATTTGTGTTTCCATGAAATGTTCTGCTTTTTAAATGTGAAAATCAAGTATAAGCCTCATCTATTTATTTTGCCACAGAGCAATTACATGTTTTTAGATAAACCATTTTGTAATAAAAATGTGATCTTTTATAACTGCC
>XM_036947134.1
GTTCCTGGAAAGACGAGCGCTCCGTCAACAAGGAAAACTAGGAAAGGAAACAATGTAAAACGAAAAAACTCAGTGCCCAGACCCTAGACTGGTAAAGAGTACACACTGATAAACTGCCAGGTCGTGCATTTAGAGGGCAGCTCGTGACATATTGTGGATTGTTTGTTTAATATATCCCTGAAAATATCATACATCATGCAGGATACCAAACAAGTGCTCCAGATCTTTCGTTGCGCTGTGTGGCTCAAGGCTTCAGTTTGAATTGCTGAGGACATGAACTGTTTAACCAGTGCAGGAGTTAGGCTGCAGAAGATCTTCTGAAAAGGCTATTTCAAGGGTTAGACCTCTGGGGATTTCAAGAACGCACTTAGGCTCGTAAAGCTAGGTGTCTAAAACAGATTGAGAACCATCGGATGCCCAAATCCTCCGGTGTACCATTGCCTTCAGGCCCAATGATCATTCCGACCAGTGCCCCCGACAAATCCCTCAATGCAGTCTGGCTAAAGGACAACGAGCTGGAGCCACGTCGAATTGAGTCAAGAGAGGATGCCGCACGGTTGCAAAGAGCCATGTCTCACCTTCAGGAGTCAGGCTGGTACTGGGGCCCCCTGACAGCTGCTCAGGCTAAGCAGGTTCTGATTGATGCTCCAGAGGGGACTTTCCTTTTGCGGGACAGCTCCTACCAGGGCTACCTCTTCACCCTGTCTGTGAAGACCAGCCTTGGCCCCACACACCTCCGTATAGAGCACGCCACTGGCATGTTTGGCTTCGACTCTGTAATTGTGGCACGGCCACGACTGCGGCGGTTTGAGGGTGCTGTAGATCTGGTGCAGCACTATGCCCTGACTTACAAGCATCTGGCCACTCAAAATGACACAGGGGGGGGTAACCCTTCGGTCCCTACAGAGAAAACTCTGCAGCTCAAACTCACCCGGCCCCTCCATAAAGTTTCCCCTAGTCTCCAGCACCTTTGCCGCATCACTATCAACCAGCATTCTCGCTGTCACCAGGACTTACCCTTGCCTAGGCGGCTACGGGACTTTTTGCTGGAATACCCTTTTGTGTTGTAGGAAATGTTAATCAGATTTGATACTCCTGAATTGTACTGTTAAATCTGACAATTTCGATCAATGTCCTAATATAGTgctgaaaccccccccccccccccccccccactccataCTCATTTAATTTGTGGCCTTAATTGAGCCTAAAAAGGCAGGGAATGAGATGGAAGAGAAAGGTTAATGGGACTGACACAAAGGGCAGTACAGACACCAGAGAAGGACTAGCCTTAACTGTCACATCCAGACCGTGTCACAGTCTGAGCGGTGTCACAGTCTCCAGGAGCCAATTAGAGCTGGGGCTTcatccaaaatggcactctattccagtatatatacagtacaagctGGTTCCTAGATTACAGAATGTACCTACTTGGGGTATATTATTATTTCCTGAAATATCCCACCTTATGTTAGTTAAACTAAATCAACAATTGAGAGTACTGAAATGGAATGCTGAAAAAATAACATACAAAAGAAAATAGATAAGAGCTTTGTTATTGCTTTATAAACGGTATTGAAGAAAGATTATTGCATTAGAAATGGACCACATTAATTAAAAACACAATACACTATTTCACCTCATACCATGGCTTTTATTGTGGGGGATTTTTGATTAATATGAATCATAAAGATTTCCGGACCATAGTCTTGCTGCAAAAGTGGCTGATCTGAGTGTCCTATTCATTCCTATTTTTTCTGAATCCTGGAGTGTAACTTGGTCATTATCAAGGTTGTGTAGTTTCAGCTGATCTCactaacgttttttttttttaaagactgtcATTGTGGTAATCAATTTCAGGTCCAACTTAGGTTTCCTTATAGATCTTTGAGATGCTGAAATAACCATCTCTTGAACTGAGGAATAACACAATAACAAACAGCAAAATGCTGCTTGTGAAGCTTCCTCATATCCTTCAACACTGCCTTATGTGTAAATGAGTGTGCTTTCTATCATGGTTTATTTGCGACCATTTTGCAGAGCTATTTGGATTTGACATTGATCTGTTTTCATGTGTGACAGTAGCCAAACTCCATTAATATTGTTGTTCTTTTTTATGATGATCACTGATCTATGTCTCAAGGTCGGGGGAATTGGCCAATTGAAACAATATAAGAATGCAATGCGAGAGAGTGTGGCATGTTTTCTCTTTTTTTGTGGTTATACTTTGGTTAAGTTGTTTAACAGGGAGCATTAAAATCTTGtattggtaaaaaaaataattactgTCTCTGTTTGTTTATAATTTTGGACTTGAGGGAATATGATTAAATATAGAATTGTTGTTTTTAGTCATTAGACTGAATACGTTCCAGAACATATTAGTTACTATAAGCCTCCTATGGGAGGCTACAATAAACCCAAATGAACCTAGAAGATATGCTAAATTAATGGACCATTATTTGTGTTTCCATGAAATGTTCTGCTTTTTAAATGTGAAAATCAAGTATAAGCCTCATCTATTTATTTTGCCACAGAGCAATTACATGTTTTTAGATAAACCATTTTGTAATAAAAATGTGATCTTTTATA

Function

NR:

description
SOCS-2b

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566260.2 False 2632 mRNA 0.42 4 49043771 49047518
XM_036947134.1 True 2604 mRNA 0.42 4 49043777 49047518

Neighbor

gene id symbol gene type direction distance location
LOC110492180 LOC105022745 coding downstream 3590 49034329 ~ 49040181 (-)
LOC110492177 LOC106567287 coding downstream 73283 48650173 ~ 48970488 (-)
LOC110491085 NA coding downstream 495604 48547180 ~ 48548167 (-)
LOC110492176 LOC106567286 coding downstream 510595 48525042 ~ 48533176 (-)
LOC110492173 LOC106567285 coding downstream 522264 48483470 ~ 48521507 (-)
LOC110492190 LOC106567293 coding upstream 29049 49076567 ~ 49082834 (-)
LOC110492186 LOC106566918 coding upstream 99299 49146817 ~ 49159851 (-)
LOC110492187 LOC106936674 coding upstream 132135 49179653 ~ 49196706 (-)
LOC110492191 NA coding upstream 210519 49258037 ~ 49259636 (-)
LOC110492195 LOC106566910 coding upstream 361610 49409128 ~ 49517268 (-)
G1383073 NA non-coding downstream 429423 48596478 ~ 48614348 (-)
G1382997 NA non-coding downstream 595888 48447219 ~ 48447883 (-)
G1382925 LOC106567283 non-coding downstream 650525 48390979 ~ 48393246 (-)
LOC110492167 NA non-coding downstream 695886 48343132 ~ 48347885 (-)
G1383391 NA non-coding upstream 11330 49058848 ~ 49059230 (-)
G1383394 NA non-coding upstream 13936 49061454 ~ 49061684 (-)
G1383396 NA non-coding upstream 16684 49064202 ~ 49065411 (-)
G1383437 NA non-coding upstream 94897 49142415 ~ 49146676 (-)
G1382894 mitf other downstream 730813 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1097549 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 1594906 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 1954241 47081938 ~ 47089563 (-)
G1381036 NA other downstream 2164625 46878611 ~ 46879146 (-)
LOC110491086 LOC106566907 other upstream 555600 49576512 ~ 49719539 (-)
G1384875 NA other upstream 1017303 50064821 ~ 50065817 (-)
G1385645 NA other upstream 2008113 51055631 ~ 51056061 (-)
G1385888 NA other upstream 2043127 51090645 ~ 51128648 (-)

Expression


Co-expression Network