LOC110492190 (LOC106567293)


Basic Information

Item Value
gene id LOC110492190
gene name LOC106567293
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49076567 ~ 49082834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566282.2
ATAACACTCAAACCAAATGGTATACGCACACCCGCACAAAAACATATTGAATAATCAGGGACGTTTTAATTTCTCACGGCTGCGCTGGATACCACATCAATACGCATGCGTCGGTCTCTCCGGCTCCGGTCTCAAAACGAGAATCAAGATGCTGATGCCCAAGAAGAATCGTATAGCCATCTACGAGCTACTCTTCAAGGAGGGGGTGATGGTCGCCAAAAAGGATGTGCATCTGGCTAAGCACCCGGAGCTGGCTGATAGGAATGTGCCCAACCTTCATGTAATGAAGGCCATGCAGTCTCTGAAGTCAACTGGGTACGTGAAGGAGCAGTTTGCCTGGCGCCACTTCTACTGGTATCTGACCAATGAGGGCATCCAGTACCTGAGGGACTTCCTGCATCTGCCCCCAGAGATTGTTCCCGCCACTCTGCGTCGTCAGATGCGCCCTGAGACCGCCCGGCCCAGGCCTAAAGgtatggagggtgagagaggtgAGCGGCCAGCTAGGTTTAACCGtgaaggaggagacagagacaactACAGACGTTCTGCTGCACCACCTGGCGCAGACAAGAAGGCTGAAGCAGGCGCTGGTGCAGCTACTGAGTTCCAATTCAGAGGCGGATTTGGACGTGGCAGAGGACAGCAACCACCACAGGAGTAAAACACTGACTCTGTTCTTGTACAGTATAATAAAAGGGGATTGCTGTAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K02947 RP-S10e, RPS10; small subunit ribosomal protein S10e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566282.2 True 712 mRNA 0.52 6 49076567 49082834

Neighbor

gene id symbol gene type direction distance location
LOC110492178 LOC106567289 coding downstream 29049 49043771 ~ 49047518 (-)
LOC110492180 LOC105022745 coding downstream 36386 49034329 ~ 49040181 (-)
LOC110492177 LOC106567287 coding downstream 106079 48650173 ~ 48970488 (-)
LOC110491085 NA coding downstream 528400 48547180 ~ 48548167 (-)
LOC110492176 LOC106567286 coding downstream 543391 48525042 ~ 48533176 (-)
LOC110492186 LOC106566918 coding upstream 63983 49146817 ~ 49159851 (-)
LOC110492187 LOC106936674 coding upstream 96819 49179653 ~ 49196706 (-)
LOC110492191 NA coding upstream 175203 49258037 ~ 49259636 (-)
LOC110492195 LOC106566910 coding upstream 326294 49409128 ~ 49517268 (-)
si:ch73-217n20.1 LOC106566909 coding upstream 452046 49534880 ~ 49543357 (-)
G1383396 NA non-coding downstream 11156 49064202 ~ 49065411 (-)
G1383394 NA non-coding downstream 14883 49061454 ~ 49061684 (-)
G1383391 NA non-coding downstream 17337 49058848 ~ 49059230 (-)
G1383073 NA non-coding downstream 462219 48596478 ~ 48614348 (-)
G1383437 NA non-coding upstream 59581 49142415 ~ 49146676 (-)
G1383505 NA non-coding upstream 168297 49251131 ~ 49251635 (-)
G1383506 NA non-coding upstream 168862 49251696 ~ 49251939 (-)
G1384397 NA non-coding upstream 195155 49277989 ~ 49278498 (-)
G1382894 mitf other downstream 763609 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1130345 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 1627702 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 1987037 47081938 ~ 47089563 (-)
G1381036 NA other downstream 2197421 46878611 ~ 46879146 (-)
LOC110491086 LOC106566907 other upstream 520284 49576512 ~ 49719539 (-)
G1384875 NA other upstream 981987 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1972797 51055631 ~ 51056061 (-)
G1385888 NA other upstream 2007811 51090645 ~ 51128648 (-)

Expression


Co-expression Network