LOC110492186 (LOC106566918)


Basic Information

Item Value
gene id LOC110492186
gene name LOC106566918
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49146817 ~ 49159851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566278.2
GACCTGAAGTCACATTGAAGCAAGCATTCCTACGCGCGCACCCTCTGGCATGAATTTGTCAGTATAGTGAGAACTTCATCACAGATAAGGCTGGCTGGCCATGATGACCAACAACCTCGCCTCACACCCCACCAAGCAGGCCAGCTGAGGACTCTCTCAACTGTCAGAGCAGAAAAAAGCACTCCGACCACCTGATAGCGTTTGAGACACGGCTCCAGGTATCCTGcctaatccccctctctctctctgacacatcaCTGCCTTATGACCTGAGGGCCACAATCATCTGTTACAACCTGACGACTGAAACAGCCAACCAGAGAAGACCACTAGAAGAGAGCCTACATATTAAACTCATCCACCACCAGAGGAGCTTGGGACTTGAGCTTCTGCCCATCTGCATTGTGACTCACTGTGGAACTCTTCGGCACCAGTACAAGAAGTCCATTGACAGACGTGAAGACAGATATCCAGAGTGACAGTCTACCAGCTCAAACACCATCAGCAGCCTGCTCCTCTGACCAGTACTGTTGAAGCTATGGGGAGTCCAGGCTGTGACCGCGTGGGGAGCACAGTGCCCCTTCCCCTGATGAGTTTCAATGACTACCCCTACAGTGTGTCTGCTCTGAGGGCCTGGGAGGAGGAGGATACCAAGCCGCCCCGTGGACTGATAAGTGTGCCTAAACACACCGCTCCTGAACGCAGCCTGCAAGGGGTGTTCCTGCCCTGCTCTGACATGCTCCTCACTGAAGACAGCTTGTGGCTGTTGAAGAAGAAAGAGGTAGCACCCCCTGAGCCCCCCTGTAAGCCCTTGGAGCAGTGCCCTGTCATCGACAGCCAGGGTTTGGGGGTGGGCCTGGGATTGGAGGTCCCCTCTGGGCTAGAGGGACAGGTGGAGGAACGCTGTCTGGAGCAGGTTCAGAGCATTGTGTTGGGAGAAGTAATGAAGGACATAGAGACCGCCTGCAAGCTGCTCAACATTACCCCAGAACCCATGGAGTGGAACTGTGGGAACGTCCAGAAGTGGCTGCTGTGGACAGAGCACCTGTACAGACTACCCCAGGTGGGAAAGGTGTTCCAGGAGCTCAGTGGGAAGGACCTGTGCTCCATGACAGAGGAGGACTTCAGGCAGCGCTCAATGCAATGTGGAGACCTGCTGTTTGCTCACCTGGACATCTGGAGATCAGcTGCGTGCATGAAGGAGTGTTGCATACCAGGAGATACCAAGTTACATAGTGCTGAGGAGACGTGTCCAGAGGCTGACTCATCCTGCTCAAGCCAGCCCATCCACCTGTGGCAGTTCCTTAGACAGCTGCTCCTCAAGCCACACAACTATGGACGCTGCATCCGCTGGCTCAACAAGGAGAAAGGTATCTTCAAAATCGAAAACTCGGCTTATGTAGCCAGGTTATGGGGCCTCAGAAAGAACCGTCCAGCTATGAACTACGACAAGCTGAGTCGCTCTATCCGACAGTACTACAAGAAGGGCATCATCCGCAAGCCTGATGTGTCCCAGAGACTGGTCTATCAGTTTGTCCACCCTGTATGAAGCTGTTGAGCAGCCAGCCAGAAGAGGAGAACACGAGTGGTGATGACTGGTGACAACTAACTGAAAAGAAGCCTCTAACTGCTGTTTTAGCTCCAGCATTAACAATGCACTGCATAGACTGCCTCCTGCATTGTGCACTCCTGCCTAATTTCAATATTCTTATGTGTAACCTGATTGCATATGGGAATTTATTGTCACATTGCATTAGATATGTAATGTTTTACATTTACAATATTGTTGAAATAATTGTAATATTAATTGTCCAATATTTCATTTTCACAAATGTCAATTCCATGTTTGTATACTTTTTCTCTTAATCACCAGTACATCAGCTACTATTTATTTCTTCATTTGTAATGGTTGCTCTTTTTAGTGCCATTTACATTTCAACATGTCCCTCCTTACTACCCATAGCACTTACTAATGTTACATTTTACATAACTAGTTCTCTGAAGCTTGCTTTGGAAACTACAGTGGACTAAGCTATGGTGAGTATATAATGTACTATAGAATGGATTGAATATGTTCACTGCTGATCTCTAGTAGCAGTCCGATGTTAAGGCCACTTCATAGGTCACAGTCACAGCTGTTTACCCCATACAGTAGGGCCAATTATGATCCTGATGTAGATTTGTAATATCACAGATCTCATTGAATTGAAATGATTTGACTCCGGTGCCCATTCCCTGGCGGAAGAATACAGTCTAATAGGAATTAGTGAATACAGTGAACTACTGTAATATAAGCATTTCAATACCACTGCCACATTTCAAGTGCTAGGAACTGTATATAGAATCGAACACCTGTGTCAGAGATTTAGTGATTGGATACATACAAATGTTGGAATATAATATTGAATATTTATAATGACAATGTGTAAGAATGTGTTTAAAT

Function

NR:

description
SAM pointed domain-containing Ets transcription factor-like

GO: NA

KEGG:

id description
K09442 SPDEF; SAM pointed domain-containing ETS transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566278.2 True 2443 mRNA 0.47 5 49146817 49159851

Neighbor

gene id symbol gene type direction distance location
LOC110492190 LOC106567293 coding downstream 63983 49076567 ~ 49082834 (-)
LOC110492178 LOC106567289 coding downstream 99299 49043771 ~ 49047518 (-)
LOC110492180 LOC105022745 coding downstream 106636 49034329 ~ 49040181 (-)
LOC110492177 LOC106567287 coding downstream 176329 48650173 ~ 48970488 (-)
LOC110491085 NA coding downstream 598650 48547180 ~ 48548167 (-)
LOC110492187 LOC106936674 coding upstream 19802 49179653 ~ 49196706 (-)
LOC110492191 NA coding upstream 98186 49258037 ~ 49259636 (-)
LOC110492195 LOC106566910 coding upstream 249277 49409128 ~ 49517268 (-)
si:ch73-217n20.1 LOC106566909 coding upstream 375029 49534880 ~ 49543357 (-)
pfkfb2a LOC106566908 coding upstream 393309 49553160 ~ 49570716 (-)
G1383437 NA non-coding downstream 141 49142415 ~ 49146676 (-)
G1383396 NA non-coding downstream 81406 49064202 ~ 49065411 (-)
G1383394 NA non-coding downstream 85133 49061454 ~ 49061684 (-)
G1383391 NA non-coding downstream 87587 49058848 ~ 49059230 (-)
G1383505 NA non-coding upstream 91280 49251131 ~ 49251635 (-)
G1383506 NA non-coding upstream 91845 49251696 ~ 49251939 (-)
G1384397 NA non-coding upstream 118138 49277989 ~ 49278498 (-)
G1384420 NA non-coding upstream 143620 49303471 ~ 49305133 (-)
G1382894 mitf other downstream 833859 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1200595 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 1697952 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 2057287 47081938 ~ 47089563 (-)
G1381036 NA other downstream 2267671 46878611 ~ 46879146 (-)
LOC110491086 LOC106566907 other upstream 443267 49576512 ~ 49719539 (-)
G1384875 NA other upstream 904970 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1895780 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1930794 51090645 ~ 51128648 (-)

Expression


Co-expression Network