LOC110492191


Basic Information

Item Value
gene id LOC110492191
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49258037 ~ 49259636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468972.2
GGGAAAAGGAAGTGGATTTGAGCAGCAGCTTCCGACCGCGAATgttctaaaaaaatgttttgatgtGGCTTAAGTGTGTTGTTGGAATAACTAGAACTTATAAAGAGTGTCATGATATAGAAAAAAATTGGCCCCCAAAGTACTGGAACCCTACAACAACCTCACAACAGAGCCCACTAGCCTGACTCAATATATAGTTATTATTTGTTACATCTTCCCTACAATCCTGTTTACTTTGCATGACCTGCTGAAGGACTCAATGGCTGGAGATGAGGATGAGGGAACCGCAGGTCACCCTGCTTCCAAAAAGCTGAAATTGGAGCCTGAGAAGAAAACGGAGAGGTGCCAAAAGGTTGACTAGGATGACATACAGAAGATGCGGGTTTGTCTCCTCATTGTCTGAGGAGCAGCTTTAACTGCTATGAGATCTGCCTTCCCTAAAGCTGCTATAAAGAAGCTGATACAGTCCATCACAGGATCCAGTCTCTCAAAATGTGGTTATCGCAATGTCCGGTATTTGCTGGAGAAATAGTGGAAGACGCTGTGGACGTgtgtgagaagagaggagacatgcCTCCCCTACAGCCCAAGCACATGAGGGAGGCTAAAGAACAGAGCAGATCCCCAATATAAAGCACAAGAACATTCTCTTCCACTGAGCCACTCATGCCTTGCTGATTATAGAAGGACAGAGCCAAGCAGGGATGTATTCCACCTTTCAGATGGTGGCAACTTACACACCACTTTATCATGTTCATTCTCTGTATTCCAATGTCCACTGGCATGGAGAATGTCTGGCTATGAAGGCAAATGCAGTATACTGCTGTCAGGAATAGTCCAACTCCAAAGTCAACCTCTGTGTTGAGGGTATTTCTTGGATATACTTGTCAATAATAGAACGTTTGATGAAAATATTAGATCTACTTAGTGTTTGTATATGTGATGCTTTATTATTTGAGCTGAAGCATAAAGCTGAAAGAATGTATCCAAAATTGGTCCCTTCTAGTGTCTCATGGAAAAAAGTGTTTTAATACAGAATTTGGGTCAGTAACTGACATATttcaataaatcaaatgtattatctTCTCATTAATGACAGGTAGTCTCGTAaattgagtttgtgtgtgtgcatgttatagGACACTAACCTCAAGCCTGCTCTCTGACCAATAAATGTGTAAAAACCATACTGTGTAAAGATCAGTCACCACCCTACACTAGGAGAATAGACAGCACACAAATAAAGGT

Function

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 11

GO:

id name namespace
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468972.2 True 1248 mRNA 0.42 4 49258037 49259636

Neighbor

gene id symbol gene type direction distance location
LOC110492187 LOC106936674 coding downstream 61331 49179653 ~ 49196706 (-)
LOC110492186 LOC106566918 coding downstream 98186 49146817 ~ 49159851 (-)
LOC110492190 LOC106567293 coding downstream 175203 49076567 ~ 49082834 (-)
LOC110492178 LOC106567289 coding downstream 210519 49043771 ~ 49047518 (-)
LOC110492180 LOC105022745 coding downstream 217856 49034329 ~ 49040181 (-)
LOC110492195 LOC106566910 coding upstream 149492 49409128 ~ 49517268 (-)
si:ch73-217n20.1 LOC106566909 coding upstream 275244 49534880 ~ 49543357 (-)
pfkfb2a LOC106566908 coding upstream 293524 49553160 ~ 49570716 (-)
LOC110491086 LOC106566907 coding upstream 316876 49576512 ~ 49719539 (-)
LOC110492200 rprd1b coding upstream 526011 49785647 ~ 49789953 (-)
G1383506 NA non-coding downstream 6098 49251696 ~ 49251939 (-)
G1383505 NA non-coding downstream 6402 49251131 ~ 49251635 (-)
G1383437 NA non-coding downstream 111361 49142415 ~ 49146676 (-)
G1383396 NA non-coding downstream 192626 49064202 ~ 49065411 (-)
G1384397 NA non-coding upstream 18353 49277989 ~ 49278498 (-)
G1384420 NA non-coding upstream 43835 49303471 ~ 49305133 (-)
G1384400 NA non-coding upstream 124399 49384035 ~ 49390274 (-)
G1384554 NA non-coding upstream 296860 49556496 ~ 49557490 (-)
G1382894 mitf other downstream 945079 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1311815 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 1809172 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 2168507 47081938 ~ 47089563 (-)
G1384875 NA other upstream 805185 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1795995 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1831009 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 1853767 51113403 ~ 51117850 (-)

Expression


Co-expression Network