si:ch73-217n20.1 (LOC106566909)


Basic Information

Item Value
gene id si:ch73-217n20.1
gene name LOC106566909
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49534880 ~ 49543357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468974.2
ACGTAGGCCTACAAAGCTACTCGTCATTTTACGTTACCTCCCCTCCAACTACAAAATATAACCCAGTCGACATACTATTTCATTAAACTCAATAACGTTTAAACGGGTGAGCGTACAGATCCGAATGCACATGAAACGATGAATCTGGTGTATAATGTCGTGTTCTTCTTATCACTTGCCCTACATGCCTCAGCTCAAGTTCCATCGAAATGTGGTGCGCCGCCGTCCTATCCACACACGCAAATCGAGGACATGAAAAAGGGTATATTTGGCCATGTACAAAAAGTCCTCTACAGATGCGCCGAGGGCTACACTCAGAACAGTGGCATTCGCTCTATCAAGTGTCAAGCTGGAAAATGGACACAGTTAACCATGACGTGTGAAAAGAAGAACTGTGGATCTGCTGGGGAGTTATTCAATGGATACTTTCACTATATGGGGGCTTTTTTCGGGGACAAAGCAAATGCAGTGTGCAATGAGGGGTTTACACTGAAGGGGATGGAATACAGAATATGTAAGGACTCTGGCTGGAGTGGAGAGATTCCCACGTGTGAAGAGGGAGGTGAACCACAAGTGGTTCCAGCAGAAGTGACCTGCCCTGCTCCTTCAGTGGCCAACAGTGTGAAGCTCAGTGAGACTGTCTCAGTGTACAGGGTCAGAGACTCAGTGACCTTGGTCTGCTCCGAGGGCTTCCTCCTGACTGGAGCCCAGCAGCTCACCTGTGGACCAGACGGCCAGTGGCAGCCCGAGCTCCCACTTTGTCTGCCCTCTGTCGGAGAGATCACTTGCAATGCCCCCAATGCAAAGGGGAAGAGGTTGATCAATGGGTTGAAGCAAGTTTATAGATCTGGAGATTCTTTGTCCTTTTCCTGCAAGGACCTTTATTATTTGGATGGATCGAACACTGTCACATGTGGGGTTGACGGAAAATGGACTCCTTCTCTTGCACAGTGCATACAGATTAAGTGCCCTatattaaacataacaaatggTAGGCCATCCATCAAGCAAAGAAGATTTGGATCAGATGTAACCATTTCCTGCTTTAAAGGAAACCTGCTAAAAGGTGCTGCCCGCATAAAATGTTCAAGATCTGGGGAATGGAAGGAAAAGATTCCACAATGTGTGCCAGAGGGAGGTGAACCACAAGTGGTTCCAGCAGAAGTGACCTGCCCTGCTCCTTCAGTGGCCAACAGTGTGAAGCTGAGTGAGACTGTCTCAGTGTACAGGGTCAGAGACTCAGTGACCTTGGTCTGCTCCGAGGGCTTCCTCCTGACTGGAGCCCAGCAGCTCACCTGTGGACCAGACGGCCAGTGGCAGCCCAAGCTCCCACTTTGTCTGCCCTTTAATGATATAATTAAAAGCCCCAAGCCTGATGGCAGATGTGGAGTGCCACCGTACCTCTCCAACGCACACCTTTCTGACTGCTGTAGAGCACAGGTAGATTTTGGTCCTGGTCACCGGGTCAGGTACAGTTGTGCCTTGGGATACATGAGAGTAagaggcacttactatagtaccTGCGTCAGTGGGAGGTGGACACCAGTAACTCTGAGATGTGAACGCAAATCATGTGGCTCAGCTGGAGAGATGTCTTTTGGTCATTTCGTCTATACCGGTGCACAGTTTGGAGATACAGCCACAGGGGTTTGTAATGAGGGGTATCAGCTGGTTGGACAGAATGTAAGAAATTGCATGAATGATGGCTGGGATGGGCGTGTTCCTGTATGTGAAGCGGTGCAGTGTGCTAAACTTCCTGAGGTGGTAAATGGAGAGATAAATGGCCATTTGGAACCACCTTACGTTTACAGCACTGTGATTGGCTATCGGTGTCGCGTAGGAAAACTGATTGGAACGAGTGAGCTCTACTGTACCAAAGATGGGACATGGAGTGCGCCACCTCCAGAGTGCAAAGGGGCATGGTGATGAATGGACCAGGCACCGTCACATGCAGCCTGGATGGGACATGGACTCCTGCCCTTCCCACATGTCAATatcGGCGGTACTGAAGGTCTAATACCATTGATCATTATACTGAATGTCTTCAACTCAACCATTTTACCATAACTTTTACCATAATAATCAAACTCAATGCAttttattataatacattaatatCCTAATGACTGTTGTCTTTAAATACCCCTTCTGTCTTCTGGAATCATGTTATTGTGAATTTTACAGCACTTTTGGTACATATACCcctattttaggggaccaaaagtattggggaaatattcacttgtgtattaaagtaCTCAAAGTTaattatttggtcccatattcatagcacacaatgactgCATCAAACATGTGACTCTACAAATGTGTTAGCAAATGCATCTGTTTGCTTTGTTTGTTTCCGATTATTTTGTTTACAATAAAAATGTTAAATTCTGcgttgtca
>XM_021566288.2
CTACGTAGGCCTACAAAGCTACTCGTCATTTTACGTTACCTCCCCTCCAACTACAAAATATAACCCAGTCGACATACTATTTCATTAAACTCAATAACGTTTAAACGGGTGAGCGTACAGATCCGAATGCACATGAAACGATGAATCTGGTGTATAATGTCGTGTTCTTCTTATCACTTGCCCTACATGCCTCAGCTCAAGTTCCATCGAAATGTGGTGCGCCGCCGTCCTATCCACACACGCAAATCGAGGACATGAAAAAGGGTATATTTGGCCATGTACAAAAAGTCCTCTACAGATGCGCCGAGGGCTACACTCAGAACAGTGGCATTCGCTCTATCAAGTGTCAAGCTGGAAAATGGACACAGTTAACCATGACGTGTGAAAAGAAGAACTGTGGATCTGCTGGGGAGTTATTCAATGGATACTTTCACTATATGGGGGCTTTTTTCGGGGACAAAGCAAATGCAGTGTGCAATGAGGGGTTTACACTGAAGGGGATGGAATACAGAATATGTAAGGACTCTGGCTGGAGTGGAGAGATTCCCACGTGTGAAGAGGGAGGTGAACCACAAGTGGTTCCAGCAGAAGTGACCTGCCCTGCTCCTTCAGTGGCCAACAGTGTGAAGCTCAGTGAGACTGTCTCAGTGTACAGGGTCAGAGACTCAGTGACCTTGGTCTGCTCCGAGGGCTTCCTCCTGACTGGAGCCCAGCAGCTCACCTGTGGACCAGACGGCCAGTGGCAGCCCGAGCTCCCACTTTGTCTGCCCTCTGTCGGAGAGATCACTTGCAATGCCCCCAATGCAAAGGGGAAGAGGTTGATCAATGGGTTGAAGCAAGTTTATAGATCTGGAGATTCTTTGTCCTTTTCCTGCAAGGACCTTTATTATTTGGATGGATCGAACACTGTCACATGTGGGGTTGACGGAAAATGGACTCCTTCTCTTGCACAGTGCATACAGATTAAGTGCCCTatattaaacataacaaatggTAGGCCATCCATCAAGCAAAGAAGATTTGGATCAGATGTAACCATTTCCTGCTTTAAAGGAAACCTGCTAAAAGGTGCTGCCCGCATAAAATGTTCAAGATCTGGGGAATGGAAGGAAAAGATTCCACAATGTGTGCCAGAGGGAGGTGAACCACAAGTGGTTCCAGCAGAAGTGACCTGCCCTGCTCCTTCAGTGGCCAACAGTGTGAAGCTGAGTGAGACTGTCTCAGTGTACAGGGTCAGAGACTCAGTGACCTTGGTCTGCTCCGAGGGCTTCCTCCTGACTGGAGCCCAGCAGCTCACCTGTGGACCAGACGGCCAGTGGCAGCCCAAGCTCCCACTTTGTCTGCCCTTTAATGATATAATTAAAAGCCCCAAGCCTGATGGCAGATGTGGAGTGCCACCGTACCTCTCCAACGCACACCTTTCTGACTGCTGTAGAGCACAGGTAGATTTTGGTCCTGGTCACCGGGTCAGGTACAGTTGTGCCTTGGGATACATGAGAGTAagaggcacttactatagtaccTGCGTCAGTGGGAGGTGGACACCAGTAACTCTGAGATGTGAACGCAAATCATGTGGCTCAGCTGGAGAGATGTCTTTTGGTCATTTCGTCTATACCGGTGCACAGTTTGGAGATACAGCCACAGGGGTTTGTAATGAGGGGTATCAGCTGGTTGGACAGAATGTAAGAAATTGCATGAATGATGGCTGGGATGGGCGTGTTCCTGTATGTGAAGCGGTGCAGTGTGCTAAACTTCCTGAGGTGGTAAATGGAGAGATAAATGGCCATTTGGAACCACCTTACGTTTACAGCACTGTGATTGGCTATCGGTGTCGCGTAGGAAAACTGATTGGAACGAGTGAGCTCTACTGTACCAAAGATGGGACATGGAGTGCGCCACCTCCAGAGTGCAAAGATATTAAATGTCCCTATCCCAAAGTACAATATGCCCAAATGACAAGAGGAATTAGAATGCCACTTGAGTTTGGGGACTCTGTGACATTTGTCTGCTTTAGGGGCATGGTGATGAATGGACCAGGCACCGTCACATGCAGCCTGGATGGGACATGGACTCCTGCCCTTCCCACATGTCAATatcGGCGGTACTGAAGGTCTAATACCATTGATCATTATACTGAATGTCTTCAACTCAACCATTTTACCATAACTTTTACCATAATAATCAAACTCAATGCAttttattataatacattaatatCCTAATGACTGTTGTCTTTAAATACCCCTTCTGTCTTCTGGAATCATGTTATTGTGAATTTTACAGCACTTTTGGTACATATACCcctattttaggggaccaaaagtattggggaaatattcacttgtgtattaaagtaCTCAAAGTTaattatttggtcccatattcatagcacacaatgactgCATCAAACATGTGACTCTACAAATGTGTTAGCAAATGCATCTGTTTGCTTTGTTTGTTTCCGATTATTTTGTTTACAATAAAAATGTTAAATTCTGcgttgtca

Function

NR:

description
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468974.2 False 2407 mRNA 0.46 14 49534880 49543355
XM_021566288.2 True 2509 mRNA 0.46 14 49534880 49543357

Neighbor

gene id symbol gene type direction distance location
LOC110492195 LOC106566910 coding downstream 17612 49409128 ~ 49517268 (-)
LOC110492191 NA coding downstream 275244 49258037 ~ 49259636 (-)
LOC110492187 LOC106936674 coding downstream 338174 49179653 ~ 49196706 (-)
LOC110492186 LOC106566918 coding downstream 375029 49146817 ~ 49159851 (-)
LOC110492190 LOC106567293 coding downstream 452046 49076567 ~ 49082834 (-)
pfkfb2a LOC106566908 coding upstream 9803 49553160 ~ 49570716 (-)
LOC110491086 LOC106566907 coding upstream 33155 49576512 ~ 49719539 (-)
LOC110492200 rprd1b coding upstream 242290 49785647 ~ 49789953 (-)
LOC110492201 LOC106566903 coding upstream 258626 49801983 ~ 49833165 (-)
LOC110492202 LOC106566902 coding upstream 296741 49840098 ~ 49880822 (-)
G1384400 NA non-coding downstream 144606 49384035 ~ 49390274 (-)
G1384420 NA non-coding downstream 229747 49303471 ~ 49305133 (-)
G1384397 NA non-coding downstream 256382 49277989 ~ 49278498 (-)
G1383506 NA non-coding downstream 282941 49251696 ~ 49251939 (-)
G1384554 NA non-coding upstream 13139 49556496 ~ 49557490 (-)
G1384695 NA non-coding upstream 225204 49768561 ~ 49768975 (-)
G1384703 LOC106566904 non-coding upstream 230646 49774003 ~ 49775982 (-)
G1384896 NA non-coding upstream 554645 50098002 ~ 50103021 (-)
G1384934 NA non-coding upstream 665951 50209308 ~ 50210181 (-)
G1382894 mitf other downstream 1221922 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1588658 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 2086015 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 2445350 47081938 ~ 47089563 (-)
G1384875 NA other upstream 521464 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1512274 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1547288 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 1570046 51113403 ~ 51117850 (-)

Expression


Co-expression Network