LOC110492200 (rprd1b)


Basic Information

Item Value
gene id LOC110492200
gene name rprd1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49785647 ~ 49789953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947158.1
TGTGTTTACCATGCTTGTTTGCTAGCTTGCTTGTTTTGGTGCAGTTAATACTTGTAAATTAATTATATTTAAACATATGTTGGGGTCAAAGTTGATTTCGCTGCACTTCAATTTTTTGACCTGCAAAACTGGCTAAAGGAAACGATTTTGTACCTGTCGGGTGAAAGGTCAAGCGGCCATCTTTGAAGAGATCCAGAGACTTTTAGAAAGACAGCTGGCTAACGGAGTGACGGTATAGCGACATATATGTAAACAGTTGTGAGGTGAGGCATATCAAAGAAAGACCTATCTGGGCACATCATGTCATCATTTTCTGAGTCTGCGTTGGAGAAGAAGCTTTCGGAGCTCAGCAACTCTCAGCAGAGCGTTCAGACGCTGTCTCTGTGGATCATTCATCATCGCAAACACTCGTCGCTCATCGTCAAAGTATGGCACAGAGAACTGAAGAAAGCAAAAAGCAGCAGGAAGTTGACGTTCCTTTATCTTGCCAATGATGTGATTCAAAACAGCAAGAAGAAAGGTCCAGAGTTCGCCAAAGACTTTGAGACAGTCCTTGTTGATGCTTGCTCTCATGTTGCAAGagagGCTGATGATGGCTGTAGAAGGCCCATGGACAGGCTGCTCACTATCTGGCAGGAGCGCAGCCTCTACAAGGTAGAGTTCATCCAGCAGCTGAAGCTCGCCATCGAAGACTCTAACAGCCCCCAACACCAACCCACAGAAGAGAAGAAGGCCCCTAAACGGACCTATCAGAAAATCCAGGAgctggaagaagaggaagaagatgaCGACTACAGGGGCCACATGTCCCCACAGGATTCAGACATCTCAGGGCCACAGCTGacGGAGGAGCTGGTCAAAGCCCTGCAGGACCTAGAGAATGCGGCCTCGGGTGATGCTGCTGTGCGCCAGAAGATTGCCTCTCTGCCACAGGAGGTGCAGGATGTGTCCCTGCTAGAGAAGATTACTGATAAGGAGGCAGCTGATAAACTGTCCAAGACGGTGGATGAGGCCTGTCTACTGCTGGCTGAGTATAACGGACGTCTGGCTGCTGAGCTGGAGGACAGGAGGCAGCTGGCGCGCATGCTGACAGAGTACATCGGTAGCCAGAAGGAAGCCCTCACCGAGAGGGAGAAGAAACTGGAGGAGTACAAACAGAAGCTGGCACGGGTCACACAGGTGCGCAAGGACCTCAAGTCCCACATCCagagcctgcctgacctctctCTGCTGCCCAATGTGACGGGAGGTCTGGCTCCTCTACCCTCTGCTGGAGACCTGTTCTCCACCGACTGAGCTCCCTGCCACACCCTGCCTCTTGCCAGGGCACACACTGTTGAACCTGCTCTCTTGCTACTGAACCCTAGGGAGAGGCTCAGAGGGACAGTGGGAGCTTGGGGACATCCCTGGTGGGGGAGACAATGGCTGTTGACGATTCTGTTCCACCAGCTTGGACAAATTTCTCCTGTTTGTTTTTATTGTGAATGCCAGCTAACTGATTCTGCGTTGGAAAGAAGAGAAGTGTTGGTCATCAGCCAATCCCCATTTTTCTGCATTGTTTATGTGCTCGTATGGTGGGATGGTGGCTCACACACCCACTAGATCTTTATGAAGAGATGCATCTCATTTATTTTAATGGCTTTAAAGTTGGTTGATTTTTGTAATGTTGGGGAGGGGGGGATGTTTTTCTATGTAggttatattttgtttgtgatATTATTTTCATCTTCCATTATTCCAGCTCAACACTTTTCAGGTCTGTCGTCATGCATACCAATCATCAGTCGATACCGTTACAACCATGTGGTAGTTTTTCTCAATCCAATGTGAAATATTTTAGCCCTCAGACATGTGGTTGATAGAAGTTATGAGAGCGAACTTGGGGCAGTTGGAGACACTGACTTACAGTCACTTAGAAACACGTGTCCATAAAATGGTCTTTGATGATTGCATCACTTGGTACAAATGTCAAACTAACTAGCAGACTGATGCTTTTCAGGGCTGTGCCTTGCCACCAATTATTCAGCATTATTCAGACTTGACAGAGTAGCAGAATCTGAACTGGCTCACGGTTCCTTCTGTCACCGCTGCAGTCCTTCCTTCCTCAGGAGTCAATCGTTAACTCAGTTTTACGATGGTTGACAATCTGATTTCTGCGATCTCTTAAGTTTGGATTATGGATCCTGGGAGATAAGTGCTTGTCAATGTTACAGAATGCAGTAGGAGTAATAGGAGGGCATCTGCCCCAAGAAATGATGTTTTGCAGATAATGTACTAAAGCTGTAGtttttcagtaaaaaaaaacaaatccatggatacaaataaaattgaacaattggaaaaa
>XM_036947159.1
CTGTGTTTACCATGCTTGTTTGCTAGCTTGCTTGTTTTGGTGCAGTTAATACTTGTAAATTAATTATATTTAAACATATGTTGGGGTCAAAGTTGATTTCGCTGCACTTCAATTTTTTGACCTGCAAAACTGGCTAAAGGAAACGGTACGATTTTGTGAGGTGAGGCATATCAAAGAAAGACCTATCTGGGCACATCATGTCATCATTTTCTGAGTCTGCGTTGGAGAAGAAGCTTTCGGAGCTCAGCAACTCTCAGCAGAGCGTTCAGACGCTGTCTCTGTGGATCATTCATCATCGCAAACACTCGTCGCTCATCGTCAAAGTATGGCACAGAGAACTGAAGAAAGCAAAAAGCAGCAGGAAGTTGACGTTCCTTTATCTTGCCAATGATGTGATTCAAAACAGCAAGAAGAAAGGTCCAGAGTTCGCCAAAGACTTTGAGACAGTCCTTGTTGATGCTTGCTCTCATGTTGCAAGagagGCTGATGATGGCTGTAGAAGGCCCATGGACAGGCTGCTCACTATCTGGCAGGAGCGCAGCCTCTACAAGGTAGAGTTCATCCAGCAGCTGAAGCTCGCCATCGAAGACTCTAACAGCCCCCAACACCAACCCACAGAAGAGAAGAAGGCCCCTAAACGGACCTATCAGAAAATCCAGGAgctggaagaagaggaagaagatgaCGACTACAGGGGCCACATGTCCCCACAGGATTCAGACATCTCAGGGCCACAGCTGacGGAGGAGCTGGTCAAAGCCCTGCAGGACCTAGAGAATGCGGCCTCGGGTGATGCTGCTGTGCGCCAGAAGATTGCCTCTCTGCCACAGGAGGTGCAGGATGTGTCCCTGCTAGAGAAGATTACTGATAAGGAGGCAGCTGATAAACTGTCCAAGACGGTGGATGAGGCCTGTCTACTGCTGGCTGAGTATAACGGACGTCTGGCTGCTGAGCTGGAGGACAGGAGGCAGCTGGCGCGCATGCTGACAGAGTACATCGGTAGCCAGAAGGAAGCCCTCACCGAGAGGGAGAAGAAACTGGAGGAGTACAAACAGAAGCTGGCACGGGTCACACAGGTGCGCAAGGACCTCAAGTCCCACATCCagagcctgcctgacctctctCTGCTGCCCAATGTGACGGGAGGTCTGGCTCCTCTACCCTCTGCTGGAGACCTGTTCTCCACCGACTGAGCTCCCTGCCACACCCTGCCTCTTGCCAGGGCACACACTGTTGAACCTGCTCTCTTGCTACTGAACCCTAGGGAGAGGCTCAGAGGGACAGTGGGAGCTTGGGGACATCCCTGGTGGGGGAGACAATGGCTGTTGACGATTCTGTTCCACCAGCTTGGACAAATTTCTCCTGTTTGTTTTTATTGTGAATGCCAGCTAACTGATTCTGCGTTGGAAAGAAGAGAAGTGTTGGTCATCAGCCAATCCCCATTTTTCTGCATTGTTTATGTGCTCGTATGGTGGGATGGTGGCTCACACACCCACTAGATCTTTATGAAGAGATGCATCTCATTTATTTTAATGGCTTTAAAGTTGGTTGATTTTTGTAATGTTGGGGAGGGGGGGATGTTTTTCTATGTAggttatattttgtttgtgatATTATTTTCATCTTCCATTATTCCAGCTCAACACTTTTCAGGTCTGTCGTCATGCATACCAATCATCAGTCGATACCGTTACAACCATGTGGTAGTTTTTCTCAATCCAATGTGAAATATTTTAGCCCTCAGACATGTGGTTGATAGAAGTTATGAGAGCGAACTTGGGGCAGTTGGAGACACTGACTTACAGTCACTTAGAAACACGTGTCCATAAAATGGTCTTTGATGATTGCATCACTTGGTACAAATGTCAAACTAACTAGCAGACTGATGCTTTTCAGGGCTGTGCCTTGCCACCAATTATTCAGCATTATTCAGACTTGACAGAGTAGCAGAATCTGAACTGGCTCACGGTTCCTTCTGTCACCGCTGCAGTCCTTCCTTCCTCAGGAGTCAATCGTTAACTCAGTTTTACGATGGTTGACAATCTGATTTCTGCGATCTCTTAAGTTTGGATTATGGATCCTGGGAGATAAGTGCTTGTCAATGTTACAGAATGCAGTAGGAGTAATAGGAGGGCATCTGCCCCAAGAAATGATGTTTTGCAGATAATGTACTAAAGCTGTAGtttttcagtaaaaaaaaacaaatccatggatacaaataaaattgaacaattggaaaaa
>XM_021566296.2
GCTGTGTTTACCATGCTTGTTTGCTAGCTTGCTTGTTTTGGTGCAGTTAATACTTGTAAATTAATTATATTTAAACATATGTTGGGGTCAAAGTTGATTTCGCTGCACTTCAATTTTTTGACCTGCAAAACTGGCTAAAGGAAACGGTACGATTAAACAGTTGTGAGGTGAGGCATATCAAAGAAAGACCTATCTGGGCACATCATGTCATCATTTTCTGAGTCTGCGTTGGAGAAGAAGCTTTCGGAGCTCAGCAACTCTCAGCAGAGCGTTCAGACGCTGTCTCTGTGGATCATTCATCATCGCAAACACTCGTCGCTCATCGTCAAAGTATGGCACAGAGAACTGAAGAAAGCAAAAAGCAGCAGGAAGTTGACGTTCCTTTATCTTGCCAATGATGTGATTCAAAACAGCAAGAAGAAAGGTCCAGAGTTCGCCAAAGACTTTGAGACAGTCCTTGTTGATGCTTGCTCTCATGTTGCAAGagagGCTGATGATGGCTGTAGAAGGCCCATGGACAGGCTGCTCACTATCTGGCAGGAGCGCAGCCTCTACAAGGTAGAGTTCATCCAGCAGCTGAAGCTCGCCATCGAAGACTCTAACAGCCCCCAACACCAACCCACAGAAGAGAAGAAGGCCCCTAAACGGACCTATCAGAAAATCCAGGAgctggaagaagaggaagaagatgaCGACTACAGGGGCCACATGTCCCCACAGGATTCAGACATCTCAGGGCCACAGCTGacGGAGGAGCTGGTCAAAGCCCTGCAGGACCTAGAGAATGCGGCCTCGGGTGATGCTGCTGTGCGCCAGAAGATTGCCTCTCTGCCACAGGAGGTGCAGGATGTGTCCCTGCTAGAGAAGATTACTGATAAGGAGGCAGCTGATAAACTGTCCAAGACGGTGGATGAGGCCTGTCTACTGCTGGCTGAGTATAACGGACGTCTGGCTGCTGAGCTGGAGGACAGGAGGCAGCTGGCGCGCATGCTGACAGAGTACATCGGTAGCCAGAAGGAAGCCCTCACCGAGAGGGAGAAGAAACTGGAGGAGTACAAACAGAAGCTGGCACGGGTCACACAGGTGCGCAAGGACCTCAAGTCCCACATCCagagcctgcctgacctctctCTGCTGCCCAATGTGACGGGAGGTCTGGCTCCTCTACCCTCTGCTGGAGACCTGTTCTCCACCGACTGAGCTCCCTGCCACACCCTGCCTCTTGCCAGGGCACACACTGTTGAACCTGCTCTCTTGCTACTGAACCCTAGGGAGAGGCTCAGAGGGACAGTGGGAGCTTGGGGACATCCCTGGTGGGGGAGACAATGGCTGTTGACGATTCTGTTCCACCAGCTTGGACAAATTTCTCCTGTTTGTTTTTATTGTGAATGCCAGCTAACTGATTCTGCGTTGGAAAGAAGAGAAGTGTTGGTCATCAGCCAATCCCCATTTTTCTGCATTGTTTATGTGCTCGTATGGTGGGATGGTGGCTCACACACCCACTAGATCTTTATGAAGAGATGCATCTCATTTATTTTAATGGCTTTAAAGTTGGTTGATTTTTGTAATGTTGGGGAGGGGGGGATGTTTTTCTATGTAggttatattttgtttgtgatATTATTTTCATCTTCCATTATTCCAGCTCAACACTTTTCAGGTCTGTCGTCATGCATACCAATCATCAGTCGATACCGTTACAACCATGTGGTAGTTTTTCTCAATCCAATGTGAAATATTTTAGCCCTCAGACATGTGGTTGATAGAAGTTATGAGAGCGAACTTGGGGCAGTTGGAGACACTGACTTACAGTCACTTAGAAACACGTGTCCATAAAATGGTCTTTGATGATTGCATCACTTGGTACAAATGTCAAACTAACTAGCAGACTGATGCTTTTCAGGGCTGTGCCTTGCCACCAATTATTCAGCATTATTCAGACTTGACAGAGTAGCAGAATCTGAACTGGCTCACGGTTCCTTCTGTCACCGCTGCAGTCCTTCCTTCCTCAGGAGTCAATCGTTAACTCAGTTTTACGATGGTTGACAATCTGATTTCTGCGATCTCTTAAGTTTGGATTATGGATCCTGGGAGATAAGTGCTTGTCAATGTTACAGAATGCAGTAGGAGTAATAGGAGGGCATCTGCCCCAAGAAATGATGTTTTGCAGATAATGTACTAAAGCTGTAGtttttcagtaaaaaaaaacaaatccatggatacaaataaaattgaacaattggaaaaa
>XM_021566295.2
ATTATCCTGCGTCGCATAGCTGTGTTTACCATGCTTGTTTGCTAGCTTGCTTGTTTTGGTGCAGTTAATACTTGTAAATTAATTATATTTAAACATATGTTGGGGTCAAAGTTGATTTCGCTGCACTTCAATTTTTTGACCTGCAAAACTGGCTAAAGGAAACGATTTTGTACCTGTCGGGTGAAAGGTCAAGCGGCCATCTTTGAAGAGATCCAGAGACTTTTAGAAAGACAGCTGGCTAACGGAGTGACGTTTCCTTAGTTAACGTCCAAGAAACAGTTGTGAGGTGAGGCATATCAAAGAAAGACCTATCTGGGCACATCATGTCATCATTTTCTGAGTCTGCGTTGGAGAAGAAGCTTTCGGAGCTCAGCAACTCTCAGCAGAGCGTTCAGACGCTGTCTCTGTGGATCATTCATCATCGCAAACACTCGTCGCTCATCGTCAAAGTATGGCACAGAGAACTGAAGAAAGCAAAAAGCAGCAGGAAGTTGACGTTCCTTTATCTTGCCAATGATGTGATTCAAAACAGCAAGAAGAAAGGTCCAGAGTTCGCCAAAGACTTTGAGACAGTCCTTGTTGATGCTTGCTCTCATGTTGCAAGagagGCTGATGATGGCTGTAGAAGGCCCATGGACAGGCTGCTCACTATCTGGCAGGAGCGCAGCCTCTACAAGGTAGAGTTCATCCAGCAGCTGAAGCTCGCCATCGAAGACTCTAACAGCCCCCAACACCAACCCACAGAAGAGAAGAAGGCCCCTAAACGGACCTATCAGAAAATCCAGGAgctggaagaagaggaagaagatgaCGACTACAGGGGCCACATGTCCCCACAGGATTCAGACATCTCAGGGCCACAGCTGacGGAGGAGCTGGTCAAAGCCCTGCAGGACCTAGAGAATGCGGCCTCGGGTGATGCTGCTGTGCGCCAGAAGATTGCCTCTCTGCCACAGGAGGTGCAGGATGTGTCCCTGCTAGAGAAGATTACTGATAAGGAGGCAGCTGATAAACTGTCCAAGACGGTGGATGAGGCCTGTCTACTGCTGGCTGAGTATAACGGACGTCTGGCTGCTGAGCTGGAGGACAGGAGGCAGCTGGCGCGCATGCTGACAGAGTACATCGGTAGCCAGAAGGAAGCCCTCACCGAGAGGGAGAAGAAACTGGAGGAGTACAAACAGAAGCTGGCACGGGTCACACAGGTGCGCAAGGACCTCAAGTCCCACATCCagagcctgcctgacctctctCTGCTGCCCAATGTGACGGGAGGTCTGGCTCCTCTACCCTCTGCTGGAGACCTGTTCTCCACCGACTGAGCTCCCTGCCACACCCTGCCTCTTGCCAGGGCACACACTGTTGAACCTGCTCTCTTGCTACTGAACCCTAGGGAGAGGCTCAGAGGGACAGTGGGAGCTTGGGGACATCCCTGGTGGGGGAGACAATGGCTGTTGACGATTCTGTTCCACCAGCTTGGACAAATTTCTCCTGTTTGTTTTTATTGTGAATGCCAGCTAACTGATTCTGCGTTGGAAAGAAGAGAAGTGTTGGTCATCAGCCAATCCCCATTTTTCTGCATTGTTTATGTGCTCGTATGGTGGGATGGTGGCTCACACACCCACTAGATCTTTATGAAGAGATGCATCTCATTTATTTTAATGGCTTTAAAGTTGGTTGATTTTTGTAATGTTGGGGAGGGGGGGATGTTTTTCTATGTAggttatattttgtttgtgatATTATTTTCATCTTCCATTATTCCAGCTCAACACTTTTCAGGTCTGTCGTCATGCATACCAATCATCAGTCGATACCGTTACAACCATGTGGTAGTTTTTCTCAATCCAATGTGAAATATTTTAGCCCTCAGACATGTGGTTGATAGAAGTTATGAGAGCGAACTTGGGGCAGTTGGAGACACTGACTTACAGTCACTTAGAAACACGTGTCCATAAAATGGTCTTTGATGATTGCATCACTTGGTACAAATGTCAAACTAACTAGCAGACTGATGCTTTTCAGGGCTGTGCCTTGCCACCAATTATTCAGCATTATTCAGACTTGACAGAGTAGCAGAATCTGAACTGGCTCACGGTTCCTTCTGTCACCGCTGCAGTCCTTCCTTCCTCAGGAGTCAATCGTTAACTCAGTTTTACGATGGTTGACAATCTGATTTCTGCGATCTCTTAAGTTTGGATTATGGATCCTGGGAGATAAGTGCTTGTCAATGTTACAGAATGCAGTAGGAGTAATAGGAGGGCATCTGCCCCAAGAAATGATGTTTTGCAGATAATGTACTAAAGCTGTAGtttttcagtaaaaaaaaacaaatccatggatacaaataaaattgaacaattggaaaaa

Function

symbol description
rprd1b Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be part of RNA polymerase II, holoenzyme. Orthologous to human RPRD1B (regulation of nuclear pre-mRNA domain containing 1B).

NR:

description
regulation of nuclear pre-mRNA domain-containing protein 1B-like

GO: NA

KEGG:

id description
K15559 RTT103; regulator of Ty1 transposition protein 103

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947158.1 False 2344 mRNA 0.47 9 49785647 49789933
XM_036947159.1 False 2241 mRNA 0.47 8 49785647 49789934
XM_021566296.2 False 2248 mRNA 0.47 8 49785647 49789935
XM_021566295.2 True 2367 mRNA 0.47 9 49785647 49789953

Neighbor

gene id symbol gene type direction distance location
LOC110491086 LOC106566907 coding downstream 182207 49576512 ~ 49719539 (-)
pfkfb2a LOC106566908 coding downstream 214931 49553160 ~ 49570716 (-)
si:ch73-217n20.1 LOC106566909 coding downstream 242290 49534880 ~ 49543357 (-)
LOC110492195 LOC106566910 coding downstream 268379 49409128 ~ 49517268 (-)
LOC110492191 NA coding downstream 526011 49258037 ~ 49259636 (-)
LOC110492201 LOC106566903 coding upstream 12030 49801983 ~ 49833165 (-)
LOC110492202 LOC106566902 coding upstream 50145 49840098 ~ 49880822 (-)
LOC110491088 LOC106566900 coding upstream 137511 49927464 ~ 49933750 (-)
e2f1 LOC106566901 coding upstream 143126 49933079 ~ 49938888 (-)
itchb LOC106566898 coding upstream 160712 49950665 ~ 49971293 (-)
G1384703 LOC106566904 non-coding downstream 9665 49774003 ~ 49775982 (-)
G1384695 NA non-coding downstream 16672 49768561 ~ 49768975 (-)
G1384554 NA non-coding downstream 228157 49556496 ~ 49557490 (-)
G1384400 NA non-coding downstream 395373 49384035 ~ 49390274 (-)
G1384896 NA non-coding upstream 308049 50098002 ~ 50103021 (-)
G1384934 NA non-coding upstream 419355 50209308 ~ 50210181 (-)
G1384933 NA non-coding upstream 421548 50211501 ~ 50215831 (-)
G1384994 NA non-coding upstream 426156 50216109 ~ 50216338 (-)
G1384997 NA non-coding upstream 431722 50221675 ~ 50221904 (-)
LOC110492187 LOC106936674 other downstream 589321 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 1472689 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1839425 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 2336782 47409235 ~ 47908274 (-)
G1384875 NA other upstream 274868 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1265678 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1300692 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 1323450 51113403 ~ 51117850 (-)
LOC110492226 LOC106572002 other upstream 2193181 51978399 ~ 51990025 (-)

Expression


Co-expression Network