LOC110492201 (LOC106566903)


Basic Information

Item Value
gene id LOC110492201
gene name LOC106566903
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49801983 ~ 49833165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947160.1
aagagtttgacacccctgatctaaAATGTTTGGTTTTGGTACAATGGTTTGCCATGCTGACTTCATTGTGAATCTTCATTGTGAAGACTTCATCGGTGTGAGCACCACCAATACACCCGTGGCTGTGTTCACAGAGGTCCCCCATGACATCACAGCACAGAGTGGCCAGGACGTGGAGATGGCGTGCTCCTTCCGGGGGGCAGGCCCCTCCTACTCCCTGGAGATCCAGTGGTGGTACATCAGGAACCACAGAGACTGGACAGAGAAACAGCCCTGGACCTCCAATCAGGTTGTACCCCAGGACGAGAGGTCAAAGGATGCTACCAAAATAAGTGTGGTAAAGGTTGCTGGGAGCAACATCTCCCACAAGTTGCGTCTGTCCAGCGTGAAGCCGTCTGACGAGGGCACGTACGAGTGCCGCGTGATCGACTTCAGCGACACCGATAGCAATGCCCGCCACCACAAGGTGAGGGCCTACCTACAGGTGGAGCCAGAGAGCAACCATAACCCGGCGCTGCGCCACCATGGGGCCAACTTTCAAACCAAGGACACCAAGGTTCTGGCAGGCAGCGGCCACCAGCCGGAGCATGGCAAGCACTCGCCAGCAGCCCACCACAGCCACCACAAACCAACAGGCACTGGCAGGGAGCTGAGGAAGAGGTCTGCTGAGGATGACAGCGCTACTGACTGCACTGACAGCTGTCCTCTAGGCCTCACAGCTCACCCATAACCTCCCTAATCTGCTCTGGCCTCAGCTCCAAGCTCCAACCTTGTCCTACACCCCAGACGGGCAAGTCCAGTCCTGGAGGACCACAGTGTGTAGAGACTTTTGATTCAACCACCCCAGCTGTAACATACATGATTAAACTAAAGTCTCTGTACACACCGCTTCCCCTGTTGCGTACCCCTGCCCTCTGCCCAACATGCACACACCAAATGGACTCTGGTGCCACCCCAGTCCTATACCTtggcctctctcatctccccttaCACTGCCCTAACGCAACAATGTCCCACCAAAAACACCTCAGCTCcactcccagtcccagccccctCTTTCTATATCACAACCCTctagatcaggggtgtcaaagtcattTTTCCCCGGGGGCCACATTCCATTTTCAACGAGGTCCAGAGGGCAGCACTGAAAATTGGTTACATTTCCTCACCGTCAAAATTAGCTAAAAACTGTCCTATATCCATAGTTTTGGGAATTTATGACGCTCCCTGACTCTCTAGCTTTTATTTCTGTGAATATCAGCGAGCTGGACCTAGTcaagaaactgtatgaatgtTGATACATTATAATTTTTACACAGTTttgatttggttttagtcattttaaagtatattgaCTTTGCCCCCCCCAAATATCTTTAAATCCACCTCGCAGGCCGGATTGGACCACCTCGCGGGCCGGATCCGGGccgtatgtttgacacccctACTCTAGATGGTCTACACTCTATAGATTACTGTATAAAATGACGAAGTGAGTGCATGTTCAACATGTTTTCTTAGAATGTTTTTCAACCATCCATGAGGAAATACAGTTTTAAGTTGGACAGTTCACTTATTGCTTTGTTCATTCATTTTGGTTTGTTAATATCTTAAGTTACTCTCCGTTTCTATGTTGCATTTGATTTAGCCAAAGTAAGATAGAGAATACTTGTTTATTTTTCTCAGCAGTTCATTTGCTGCCTCTCTATGGGCAACTTCATGGAGAAATAGAATTTGCTCACTTTAATTTGGCCAAAGCTGCTTTGTTTGATGAAAGGTTTCCTCTCAACCAGATCTAAACCAATGTTTATCAAATAAAACCTGTTTGTGGTGTTTTCTGCTTTCCCTACAGACTGAATGTGGCATTGTGAAAGACATGGATTAAAGGAACTGTTTCTAGCTCTTAACTTTGCTTTAATGTTTTGTAAGAAATCattataaaaatgtatattttagaaTTTCTTCTAGGTTGTTGGTCTCGCACTAAATGTATGCCTTTATCAAATTAAATAAATTGTACATGAACCTA
>XM_021566297.2
CATCCAGAGCCGAACGAGCTGAAGCGAGGTATCAATCAGCGATTTGCACTAGAGGGTGGCTGCACCATCAAATCGCTTCATATCTGCGATCTGCGCTTTTGTTTAAAATCCGGGTCTATCTATACAACACGTTGCCTGGATTTGATCTTGTAAACTTAGTACACCTAATGTGAGAGAGTGGCAAAGAATACGGAATCTCAAATAAAAGAGATGGGAGCCTTTGGGGTAATAGTAGGGACTTTACATTACATGGGACTCTACATCCAACTTAGTGCCTCCACAAGGCAAGGTGGACATGCAGAGGTAGAGAACCACATCTCCGGGAACGCTGTGTTCACAGAGGTCCCCCATGACATCACAGCACAGAGTGGCCAGGACGTGGAGATGGCGTGCTCCTTCCGGGGGGCAGGCCCCTCCTACTCCCTGGAGATCCAGTGGTGGTACATCAGGAACCACAGAGACTGGACAGAGAAACAGCCCTGGACCTCCAATCAGGTTGTACCCCAGGACGAGAGGTCAAAGGATGCTACCAAAATAAGTGTGGTAAAGGTTGCTGGGAGCAACATCTCCCACAAGTTGCGTCTGTCCAGCGTGAAGCCGTCTGACGAGGGCACGTACGAGTGCCGCGTGATCGACTTCAGCGACACCGATAGCAATGCCCGCCACCACAAGGTGAGGGCCTACCTACAGGTGGAGCCAGAGAGCAACCATAACCCGGCGCTGCGCCACCATGGGGCCAACTTTCAAACCAAGGACACCAAGGTTCTGGCAGGCAGCGGCCACCAGCCGGAGCATGGCAAGCACTCGCCAGCAGCCCACCACAGCCACCACAAACCAACAGGCACTGGCAGGGAGCTGAGGAAGAGGTCTGCTGAGGATGACAGCGCTACTGACTGCACTGACAGCTGTCCTCTAGGCCTCACAGCTCACCCATAACCTCCCTAATCTGCTCTGGCCTCAGCTCCAAGCTCCAACCTTGTCCTACACCCCAGACGGGCAAGTCCAGTCCTGGAGGACCACAGTGTGTAGAGACTTTTGATTCAACCACCCCAGCTGTAACATACATGATTAAACTAAAGTCTCTGTACACACCGCTTCCCCTGTTGCGTACCCCTGCCCTCTGCCCAACATGCACACACCAAATGGACTCTGGTGCCACCCCAGTCCTATACCTtggcctctctcatctccccttaCACTGCCCTAACGCAACAATGTCCCACCAAAAACACCTCAGCTCcactcccagtcccagccccctCTTTCTATATCACAACCCTctagatcaggggtgtcaaagtcattTTTCCCCGGGGGCCACATTCCATTTTCAACGAGGTCCAGAGGGCAGCACTGAAAATTGGTTACATTTCCTCACCGTCAAAATTAGCTAAAAACTGTCCTATATCCATAGTTTTGGGAATTTATGACGCTCCCTGACTCTCTAGCTTTTATTTCTGTGAATATCAGCGAGCTGGACCTAGTcaagaaactgtatgaatgtTGATACATTATAATTTTTACACAGTTttgatttggttttagtcattttaaagtatattgaCTTTGCCCCCCCCAAATATCTTTAAATCCACCTCGCAGGCCGGATTGGACCACCTCGCGGGCCGGATCCGGGccgtatgtttgacacccctACTCTAGATGGTCTACACTCTATAGATTACTGTATAAAATGACGAAGTGAGTGCATGTTCAACATGTTTTCTTAGAATGTTTTTCAACCATCCATGAGGAAATACAGTTTTAAGTTGGACAGTTCACTTATTGCTTTGTTCATTCATTTTGGTTTGTTAATATCTTAAGTTACTCTCCGTTTCTATGTTGCATTTGATTTAGCCAAAGTAAGATAGAGAATACTTGTTTATTTTTCTCAGCAGTTCATTTGCTGCCTCTCTATGGGCAACTTCATGGAGAAATAGAATTTGCTCACTTTAATTTGGCCAAAGCTGCTTTGTTTGATGAAAGGTTTCCTCTCAACCAGATCTAAACCAATGTTTATCAAATAAAACCTGTTTGTGGTGTTTTCTGCTTTCCCTACAGACTGAATGTGGCATTGTGAAAGACATGGATTAAAGGAACTGTTTCTAGCTCTTAACTTTGCTTTAATGTTTTGTAAGAAATCattataaaaatgtatattttagaaTTTCTTCTAGGTTGTTGGTCTCGCACTAAATGTATGCCTTTATCAAATTAAATAAATTGTACATGAACCTA

Function

NR:

description
V-set and transmembrane domain-containing protein 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947160.1 False 2032 mRNA 0.47 4 49801983 49818543
XM_021566297.2 True 2238 mRNA 0.47 4 49801983 49833165

Neighbor

gene id symbol gene type direction distance location
LOC110492200 rprd1b coding downstream 12030 49785647 ~ 49789953 (-)
LOC110491086 LOC106566907 coding downstream 198543 49576512 ~ 49719539 (-)
pfkfb2a LOC106566908 coding downstream 231267 49553160 ~ 49570716 (-)
si:ch73-217n20.1 LOC106566909 coding downstream 258626 49534880 ~ 49543357 (-)
LOC110492195 LOC106566910 coding downstream 284715 49409128 ~ 49517268 (-)
LOC110492202 LOC106566902 coding upstream 6933 49840098 ~ 49880822 (-)
LOC110491088 LOC106566900 coding upstream 94299 49927464 ~ 49933750 (-)
e2f1 LOC106566901 coding upstream 99914 49933079 ~ 49938888 (-)
itchb LOC106566898 coding upstream 117500 49950665 ~ 49971293 (-)
LOC110492208 LOC106566894 coding upstream 481751 50314916 ~ 50318773 (-)
G1384703 LOC106566904 non-coding downstream 26001 49774003 ~ 49775982 (-)
G1384695 NA non-coding downstream 33008 49768561 ~ 49768975 (-)
G1384554 NA non-coding downstream 244493 49556496 ~ 49557490 (-)
G1384400 NA non-coding downstream 411709 49384035 ~ 49390274 (-)
G1384896 NA non-coding upstream 264837 50098002 ~ 50103021 (-)
G1384934 NA non-coding upstream 376143 50209308 ~ 50210181 (-)
G1384933 NA non-coding upstream 378336 50211501 ~ 50215831 (-)
G1384994 NA non-coding upstream 382944 50216109 ~ 50216338 (-)
G1384997 NA non-coding upstream 388510 50221675 ~ 50221904 (-)
LOC110492187 LOC106936674 other downstream 605657 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 1489025 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1855761 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 2353118 47409235 ~ 47908274 (-)
G1384875 NA other upstream 231656 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1222466 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1257480 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 1280238 51113403 ~ 51117850 (-)
LOC110492226 LOC106572002 other upstream 2149969 51978399 ~ 51990025 (-)

Expression


Co-expression Network