LOC110492202 (LOC106566902)


Basic Information

Item Value
gene id LOC110492202
gene name LOC106566902
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49840098 ~ 49880822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566299.2
CAAGCCTCCTCTTCAGAATATCACGACAACGAAGTGCTTTACGGTAACATTTGCTGTTTTAAGTTTGTAGCGGGACATTGCGAGGCTGACATAGCCACTATTCATTGTTGGTAATTGTAACGTTTGCCCGAAACTTAACACTTCGTCATGGACGTAGGCGAGCTACTGAATTATCAGCCTGACAGGGGGGCAAAGCGTCTgcgggatgatgatgatgatgatggtgtagACCCCAGAAGCAAGAAGGTTGGCAGAGACCTGGCCAGACGCCTGGAGAGAGATGACGGTGAGGACCCGAGTGGTGACAGGAAGAGGATACTGGAGAAACTCATGGATGATGATGAGGACGCAGACGACCAAGAGGGTGAACCAGTGGATGAGAGTTCGGTGAAGAAAATGATCCTGACCTTTGAAAAAAGATCTTACAAAAACCAAGAGCTGAGGATAAAGTTCCCAGACACCCCGGGGAGATTCATGGAAACAGAGCTGGATCTGAATGACATCATCCAGGAGATGCATGTCATCGCCACCATGCCTGATCTCTACCACCTCTTGGTGGAGCTCAATGCTGTCCATTCCCTGCTGGGCTTACTCAGCCACGAGAACACAGATATCGCCATTGCAGTGGTTGATTTGTTACAAGAGCTGACGGACATTGACACACTTCAAGAAAGTGAGGAGGGCGCGGAAGTACTCATAGACTCTTTGCTGGAGGGACAGGTTGTGGCCCTTCTGGTGCAGAACATGGAGAGGCTGGATGAGCAGGTGAAGGAGGAGGCAGATGGAGTCTACAACACATTAGCCATCATTGAGAACATGGCAGAGTTCAGGCCTGGCCTGTGCACAGAAGCAGCTCAGCAAGGACTCATGCAGTGGTTGCTAAAGAGAATAAAGGCAAAGATTCCATTCGACGCTAACAAGCTGTACTGCAGTGAAATCTTGGCTATCTTGCTTCAAAACAATGACAGCACCAGGGAGCTCTTGGGGGAGCTGGATGGGATTGACGTTTTACTGCAGCAGCTCTCTGTGTTCAAGCGGCACAACCCAGCCACGGCAGAGGAGCAGGAGATGATGGAGAACCTGTTTGATGCCCTGTGCTCCTGTCTGATGCTGGCTGCCAACCGGGACCGCTTCCTCAGGGGAGAGGGTCTGCAGCTTATGAACCTCATGCTTAGGGAAAAGAAAATGTCTCGGACCAGCGCTCTGAAGGTCTTAGACCACGGCATGATTGGCCCAGAGGGTTCTGATGACTGCCACAAGTTTGTGGACATCCTGGGCCTGAGGACCATCTTCCCCCTGTTCATGAAGACCCCTAAAAAGATGAGGAAAGCTGGGACAGTAGACAAAGAACATGAAGAACACGTGTGTTCCATCATTGCTTCCTGCCTGCGGAACTTGAAAGCCCAGCAGAGGACGAGGCTCCTCAGCAAGTTCACAGAGAATGACTGTGAGAAGGTTGATAGACTGATGGAGCTGCATTTTAAGTACCTGGAAGCTGTTCAGCTGGCTGACAAGAGGATTGAAGGAGAGAAACATgacATGGTTAAACGTGGTGAGATTCTGGATGATGTGATGGAGGATGAGTTCTACCTACGGAGGCTGGATGCTGGGCTGTTTGTCCTCCAGTTGCTCTGTTATATCATGGTGGAGATCAGCAACTCAGGGATATCCCAGCTGCAGCAGAGGGTGCATCAGATCCTGAACCTGAGGGGAGGCTCTGTCAAAGTGGTGCGGCACATCATGAGAGAGTATGCTGAAAACATCGGGGACGGAAAGAGTGAGGAGTTCAAAGAGAGTGAGCAGAAGAGGATTATGGACCTGCTGGAGAACTTCTAACCCTAACCAATCCCTGGGAGGAGTACCTGACCAGAACAGAGGGTctccacacactcacagacagaaGATACCAGTGTCCAGCAGGTGCAGAGAAGCTGTATTGACTGCGCTCTGTGTGCTGGACTATAGTGACTCAAAATATAATAACAAAGATGTGCAATCTTAGACTGCAACTCTTTCAGACTCACATGTTTGTTGTTTGATTTGTGTATTTTGTAATAAAATCCCATCCGGATAAGATTGTTTTCTGTG
>XM_021566300.2
CAAGCCTCCTCTTCAGAATATCACGACAACGAAGTGCTTTACGGTAACATTTGCTGTTTTAAGTTTGTAGCGGGACATTGCGAGGCTGACATAGCCACTATTCATTGTTGGTAATTGTAACGTTTGCCCGAAACTTAACACTTCGTCATGGACGTAGGCGAGCTACTGAATTATCAGCCTGACAGGGGGGCAAAGCGTCTgcgggatgatgatgatgatgatggtgtagACCCCAGAAGCAAGAAGGTTGGCAGAGACCTGGCCAGACGCCTGGAGAGAGATGACGGTGAGGACCCGAGTGGTGACAGGAAGAGGATACTGGAGAAACTCATGGATGATGATGAGGACGCAGACGACCAAGAGGGTGAACCAGTGGATGAGAGTTCGGTGAAGAAAATGATCCTGACCTTTGAAAAAAGATCTTACAAAAACCAAGAGCTGAGGATAAAGTTCCCAGACACCCCGGGGAGATTCATGGAAACAGAGCTGGATCTGAATGACATCATCCAGGAGATGCATGTCATCGCCACCATGCCTGATCTCTACCACCTCTTGGTGGAGCTCAATGCTGTCCATTCCCTGCTGGGCTTACTCAGCCACGAGAACACAGATATCGCCATTGCAGTGGTTGATTTGTTACAAGAGCTGACGGACATTGACACACTTCAAGAAAGTGAGGAGGGCGCGGAAGTACTCATAGACTCTTTGCTGGAGGGACAGGTTGTGGCCCTTCTGGTGCAGAACATGGAGAGGCTGGATGAGCAGGTGAAGGAGGAGGCAGATGGAGTCTACAACACATTAGCCATCATTGAGAACATGGCAGAGTTCAGGCCTGGCCTGTGCACAGAAGCAGCTCAGCAAGGACTCATGCAGTGGTTGCTAAAGAGAATAAAGGCAAAGATTCCATTCGACGCTAACAAGCTGTACTGCAGTGAAATCTTGGCTATCTTGCTTCAAAACAATGACAGCACCAGGGAGCTCTTGGGGGAGCTGGATGGGATTGACGTTTTACTGCAGCAGCTCTCTGTGTTCAAGCGGCACAACCCAGCCACGGCAGAGGAGCAGGAGATGATGGAGAACCTGTTTGATGCCCTGTGCTCCTGTCTGATGCTGGCTGCCAACCGGGACCGCTTCCTCAGGGGAGAGGGTCTGCAGCTTATGAACCTCATGCTTAGGGAAAAGAAAATGTCTCGGACCAGCGCTCTGAAGGTCTTAGACCACGGCATGATTGGCCCAGAGGGTTCTGATGACTGCCACAAGTTTGTGGACATCCTGGGCCTGAGGACCATCTTCCCCCTGTTCATGAAGACCCCTAAAAAGATGAGGAAAGCTGGGACAGTAGACAAAGAACATGAAGAACACGTGTGTTCCATCATTGCTTCCTGCCTGCGGAACTTGAAAGCCCAGCAGAGGACGAGGCTCCTCAGCAAGTTCACAGAGAATGACTGTGAGAAGGTTGATAGACTGATGGAGCTGCATTTTAAGTACCTGGAAGCTGTTCAGCTGGCTGACAAGAGGATTGAAGGAGAGAAACATCTGCAGCAGAGGGTGCATCAGATCCTGAACCTGAGGGGAGGCTCTGTCAAAGTGGTGCGGCACATCATGAGAGAGTATGCTGAAAACATCGGGGACGGAAAGAGTGAGGAGTTCAAAGAGAGTGAGCAGAAGAGGATTATGGACCTGCTGGAGAACTTCTAACCCTAACCAATCCCTGGGAGGAGTACCTGACCAGAACAGAGGGTctccacacactcacagacagaaGATACCAGTGTCCAGCAGGTGCAGAGAAGCTGTATTGACTGCGCTCTGTGTGCTGGACTATAGTGACTCAAAATATAATAACAAAGATGTGCAATCTTAGACTGCAACTCTTTCAGACTCACATGTTTGTTGTTTGATTTGTGTATTTTGTAATAAAATCCCATCCGGATAAGATTGTTTTCTGTG

Function

NR:

description
beta-catenin-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566299.2 False 2088 mRNA 0.50 16 49840098 49880822
XM_021566300.2 True 1950 mRNA 0.50 15 49840098 49880822

Neighbor

gene id symbol gene type direction distance location
LOC110492201 LOC106566903 coding downstream 6933 49801983 ~ 49833165 (-)
LOC110492200 rprd1b coding downstream 50145 49785647 ~ 49789953 (-)
LOC110491086 LOC106566907 coding downstream 236658 49576512 ~ 49719539 (-)
pfkfb2a LOC106566908 coding downstream 269382 49553160 ~ 49570716 (-)
si:ch73-217n20.1 LOC106566909 coding downstream 296741 49534880 ~ 49543357 (-)
LOC110491088 LOC106566900 coding upstream 46642 49927464 ~ 49933750 (-)
e2f1 LOC106566901 coding upstream 52257 49933079 ~ 49938888 (-)
itchb LOC106566898 coding upstream 69843 49950665 ~ 49971293 (-)
LOC110492208 LOC106566894 coding upstream 434094 50314916 ~ 50318773 (-)
mad2l2 mad2l2 coding upstream 1140634 51021456 ~ 51031919 (-)
G1384703 LOC106566904 non-coding downstream 64116 49774003 ~ 49775982 (-)
G1384695 NA non-coding downstream 71123 49768561 ~ 49768975 (-)
G1384554 NA non-coding downstream 282608 49556496 ~ 49557490 (-)
LOC110492195 LOC106566910 non-coding downstream 429415 49409128 ~ 49517268 (-)
G1384400 NA non-coding downstream 449824 49384035 ~ 49390274 (-)
G1384896 NA non-coding upstream 217180 50098002 ~ 50103021 (-)
G1384934 NA non-coding upstream 328486 50209308 ~ 50210181 (-)
G1384933 NA non-coding upstream 330679 50211501 ~ 50215831 (-)
G1384994 NA non-coding upstream 335287 50216109 ~ 50216338 (-)
G1384997 NA non-coding upstream 340853 50221675 ~ 50221904 (-)
LOC110492187 LOC106936674 other downstream 643772 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 1527140 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1893876 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 2391233 47409235 ~ 47908274 (-)
G1384875 NA other upstream 183999 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1174809 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1209823 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 1232581 51113403 ~ 51117850 (-)
LOC110492226 LOC106572002 other upstream 2102312 51978399 ~ 51990025 (-)

Expression


Co-expression Network