LOC110491088 (LOC106566900)


Basic Information

Item Value
gene id LOC110491088
gene name LOC106566900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49927464 ~ 49933750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110491088
ATGCGATACACACACCAGCAGCAAACAGATCTGAGGCTGAAGCATGTCAATCTGGAAGTCCATGACAACCACACGGCCCACCAGACACAGGGCCTGAGCTCCAGGCACCTGGTGGTACGGCGCGGGAGGCCTTTCAAAGTCACCATGCTGTTACATGGAAGAGTGTTCAACCCACAGATGAAGACACTCATCTTTACTGCCCTGCTGGATGATACAGTGTACATCCCTTTTGAAGACCAGAGAGATGAGTACGTTAAAAAGGACTTTGGATTTTTGTACATGGGCACTCCTCACAATGTCATATCAAGACCATGGTCATTTGGCCAGTATGAACAGGGGATACTGGAGATTTGCCTTAACATCCTCCAGGTCAGCCCACAACACAGCAAAGACAAGCAGGGAGATGACCTCCTCCGTGCAGACCCTGTCTACATCTGCAGAGTTGTGTGTGCCGTGATCAATTGTGAAGATGATCGAGGTGTCTTGAAGGGGAACTGGTCAGGAAACTTTAAATATGGTGCAATGGACGGGCAGCGCAGACATCTTAAAGCTCTGGGGCCGATCCAATTTCAGCCCTGTACGGTACGGCCAGTGCTGGGTCTTTGCCTCAGTCATGTGTACAGTTATGAGAGTTTTGGGGATCCCATCAAGAGTTGTCACAATCTTTAACTCCGCCCATGACACCAATGGAAGCCTGGTCATCGAGGAATATTACACCAACACTGAGGGGGAAATCAGCATGTCCAAGGACAGCATATGGAACTTCCATGTGTGGGTTGAATGCTGGATGTCACGACCAGACCTGGGCCCAGGGTTTGATGGGTGGCAGGTATTGGATCCAACTCCCCAGGAGAAAAAATGATAACATCTGCAACACTCTGGGGGAATATTCTGCTGTGGTCCGTGTCCAGTGAAAGGCATCAGAAAGAGACGTTATGACGCCTTGTACGACGCTCCATTCATATATGCGTCGGTCAATGCGGACGTTGTCACTGTGATAGTGAGGGATGGGCTAGTGTTGGGGAGGAGTGTGGACACGCAGAGGGTCGAATCTCACATCCTCACTAAGAACGTGGGCTCTGATGGACCCCAGAGCCTCACCTGTGCTTACAAGTGTAATGAAACAACAGTTCAGAGTTTGGAGGTTTCCCTGAAGATTGACAAAGTGCCAACGATGGGGGAGAACATTTGCTTGTTCATCACAAAGTCCCCAAGGTTCTGAAAGAACATGTCAATGCTCAAACCAAAGAATACAACGGTAGCCCACAAGGCACGTTTTGGGAGGCAGATAAGCAGCTTCATTTTGCACCATGAGCAGTTCTGTCGGTTCATCACCAGATCCCATACTCTGAGTATGAGAACATGCTTGTTGGTGAGGGCTTGCTGAATGTGGCGGTGGTCATAAAGGATGAGCTGACCAAAGAGCGAGTCCTAGCATCAGAAGAGTTCAACATCATCGCCCCACAGATCTCTATAGAGGTCGTTGGAGGGGATAACATTCAGCAAAAGAAGGAGCACAGTGCCCTGGTTTCTTTAACTAATGGTTTCGCTATGCCCTTGAGCAGTGCTGTGCTGACAGCGGAAGGCTCAGGTTTGTTGGAGGGCAAAGACCAGACAAAGGTGTGCCTCCCGCAGCCAGGACAGACCATTGAGAGAAAGGTTTCTTTCACCCCCACCACAACCGGCACCAAACTGGTGCAGGCAAGCCTGGCTTACAACAACAGTTCCACAGCCATCAGAAGCTTCCACAAAGTCTCTGTTTTTGCATAAAGCTCACTTTTTGTATTTCTCTGCCTGGTAAATTAATATTAAAATGCTCGTTCTATTTCTtaatttcttgttttgtattgatAGGTATTACTGCACATTTGTAGCTTAAGCTAGAAACAGGAGCATTTTGCTGCACATGCTATAACATCTGCAAAGAAATGTTTACATGACCAATgtatacaccaccgttcaaaggtttggggtcccttagaaatatccttgtttttgaaggaaaa

Function

NR:

description
PREDICTED: protein-glutamine gamma-glutamyltransferase 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110491088 True 2006 mRNA 0.48 12 49927464 49933750

Neighbor

gene id symbol gene type direction distance location
LOC110492202 LOC106566902 coding downstream 46642 49840098 ~ 49880822 (-)
LOC110492201 LOC106566903 coding downstream 94299 49801983 ~ 49833165 (-)
LOC110492200 rprd1b coding downstream 137511 49785647 ~ 49789953 (-)
LOC110491086 LOC106566907 coding downstream 324024 49576512 ~ 49719539 (-)
pfkfb2a LOC106566908 coding downstream 356748 49553160 ~ 49570716 (-)
itchb LOC106566898 coding upstream 16915 49950665 ~ 49971293 (-)
LOC110492208 LOC106566894 coding upstream 381166 50314916 ~ 50318773 (-)
mad2l2 mad2l2 coding upstream 1087706 51021456 ~ 51031919 (-)
LOC110491089 lrrc47 coding upstream 1107373 51041123 ~ 51043794 (-)
LOC110491090 fam57b coding upstream 1143028 51076778 ~ 51077359 (-)
G1384703 LOC106566904 non-coding downstream 151482 49774003 ~ 49775982 (-)
G1384695 NA non-coding downstream 158489 49768561 ~ 49768975 (-)
G1384554 NA non-coding downstream 369974 49556496 ~ 49557490 (-)
LOC110492195 LOC106566910 non-coding downstream 516781 49409128 ~ 49517268 (-)
G1384400 NA non-coding downstream 537190 49384035 ~ 49390274 (-)
G1384896 NA non-coding upstream 164252 50098002 ~ 50103021 (-)
G1384934 NA non-coding upstream 275558 50209308 ~ 50210181 (-)
G1384933 NA non-coding upstream 277751 50211501 ~ 50215831 (-)
G1384994 NA non-coding upstream 282359 50216109 ~ 50216338 (-)
G1384997 NA non-coding upstream 287925 50221675 ~ 50221904 (-)
LOC110492187 LOC106936674 other downstream 731138 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 1614506 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1981242 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 2478599 47409235 ~ 47908274 (-)
G1384875 NA other upstream 131071 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1121881 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1156895 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 1179653 51113403 ~ 51117850 (-)
LOC110492226 LOC106572002 other upstream 2049384 51978399 ~ 51990025 (-)

Expression


Co-expression Network