LOC110492208 (LOC106566894)


Basic Information

Item Value
gene id LOC110492208
gene name LOC106566894
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 50314916 ~ 50318773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566309.2
TGCAGGTTGGCTGCTGTCTTACATTGATCTAGGATACTAGATGCAACTGCTGTTCTGAATGTAGCGAGCAGATAGTAGTATTAGATTGTTGTGATGCCTAGGTGTAGACAACATATGGATTTCCAATACTGAGAATTGATTATTTTTCCATTCGCTTTCTCTTGCTAGCAGACCTGACAGATCACTTCGGGTACTTCTATATACAGGCTTGCCAGAAAAGAGAGAAACTAAAGGGGGCATAGCACATAAGAGGGCCTTAAGGAGAGTGTAGCTGTAGAAACAGGGTTAGGTAGATAGACTGCCATGAGAGAGGATCCGTCAAGCTGTGGTGAATACCCTGAGGGAGGGGTGGTGTCCAGCGAGGAGGAGCCAGACTGTGCTCCAATCAAATACCCTGTGGTGCTGGTAACACCAGGGGCCGGCGGGCGCAAGAGTGTCTCCAGGAAAGACAACATTTCATCGCCAACAGAGGACAACAAGTCATCGACAGGAGGGCCTCCCAGTCTGATCCCATCAGGACCCAAGAGGCCTAAGAAGAGTCCCCagccctccctgtctcctctccccatcccaggCCAGCCCCTGGAGGACCCTCAGCACCAACGGGTGATCGCCAATGTACGGGAGCGCCAAAGGACGCAGTCCCTGAACGACGCCTTTGCCTCGCTGCGTAAGATCATCCCCACGCTCCCCTCAGACAAGCTGAGCAAGATCCAGATCCTAAAGCTGGCCTCGCGTTACATTGACTTCCTCTACCAGGTCCTGCAGAGCGACGAGATGGATGCCAAGCTAGCCAGCTGTAACTACCTAGCCCACGAGAGACTCAGCTATGCATTCTCGgtgtggaggatggagggggccTGGTCCATGTCCGCTACCCACTAGCCCTGTCACCTACCTCTCTAACaccccctcactcctctcctgccCCAGCCAATCTcccatgacctctgacccctgctcTCTGACCCTCATCCTCACAGCATCTAACTCTTATCATTCTACACCAGCACCGTACCAAGGCGACTGAGAAGCCTCCACCTGTTGGTCTGCAATCCCTTTGTTTACTGGTTTGGAACTACACCTCTGGACCAACTAAATCAAAGATATGAGCCTGCCCTCACTCTGGAGAGGTACTGTAGAGAGACTCAGCTTCCTCGAGCCCACACAGAATCTATGGGACAATGATTCAGAGCTACTAGCAGGTCTAGAAGAGGGACAACTATAGAGTTTTAGGACCTGGAAATTGCAACTTGTGACTTGGAAACAATTTGGTAAACAAATGTAAGTTGCAGTTATTCATGGGAATATTCCTATTGTACATGTAGTACAGAACTGTTTGTAAACCAACATACAATTCCTCATTAAAAGGGAATCAGTTGGTGTAAGATAATAAAATGAGTACTTGAGCATC

Function

NR:

description
twist-related protein 2-like

GO: NA

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566309.2 True 1414 mRNA 0.50 2 50314916 50318773

Neighbor

gene id symbol gene type direction distance location
itchb LOC106566898 coding downstream 343623 49950665 ~ 49971293 (-)
e2f1 LOC106566901 coding downstream 376028 49933079 ~ 49938888 (-)
LOC110491088 LOC106566900 coding downstream 381166 49927464 ~ 49933750 (-)
LOC110492202 LOC106566902 coding downstream 434094 49840098 ~ 49880822 (-)
LOC110492201 LOC106566903 coding downstream 481751 49801983 ~ 49833165 (-)
mad2l2 mad2l2 coding upstream 702683 51021456 ~ 51031919 (-)
LOC110491089 lrrc47 coding upstream 722350 51041123 ~ 51043794 (-)
LOC110491090 fam57b coding upstream 758005 51076778 ~ 51077359 (-)
LOC110492214 LOC106566770 coding upstream 783010 51101783 ~ 51103933 (-)
dffb LOC106566885 coding upstream 794818 51113403 ~ 51117850 (-)
G1385025 NA non-coding downstream 515 50313736 ~ 50314401 (-)
G1385009 NA non-coding downstream 72559 50241871 ~ 50242357 (-)
G1385003 NA non-coding downstream 83278 50231434 ~ 50231638 (-)
G1384997 NA non-coding downstream 93012 50221675 ~ 50221904 (-)
G1384994 NA non-coding downstream 98578 50216109 ~ 50216338 (-)
G1385072 NA non-coding upstream 10206 50328979 ~ 50329358 (-)
G1385123 NA non-coding upstream 102709 50421482 ~ 50421767 (-)
G1385125 NA non-coding upstream 105342 50424115 ~ 50424335 (-)
G1385133 NA non-coding upstream 117690 50436463 ~ 50436711 (-)
G1385153 NA non-coding upstream 144411 50463184 ~ 50463397 (-)
G1384875 NA other downstream 249099 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 595377 49576512 ~ 49719539 (-)
LOC110492187 LOC106936674 other downstream 1118590 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 2001958 48282213 ~ 48312958 (-)
G1382721 NA other downstream 2368694 47943379 ~ 47946222 (-)
G1385645 NA other upstream 736858 51055631 ~ 51056061 (-)
G1385888 NA other upstream 771872 51090645 ~ 51128648 (-)
LOC110492226 LOC106572002 other upstream 1664361 51978399 ~ 51990025 (-)
spen LOC106566857 other upstream 2100103 52379551 ~ 52428869 (-)

Expression


Co-expression Network