LOC110492209 (LOC106566893)


Basic Information

Item Value
gene id LOC110492209
gene name LOC106566893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 50324145 ~ 50326821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566310.2
AAAGCTTACTTCCTTGACTTGCTCTCATTCCCTCTGTCTCttcagtgtgtgtagagtccagtgtggagAATTAAAGTGAATAAGGAAGGACCATGCCTCTGTCTAAACCAAAGGAGCTGTTAGAACATGAGCTCAGCTGCCCTATCTGCCTGCAGCTCTACACGGATCCTGTGTATCTGCCCTGTGGCCATAACTACTGCCTGGCCTGCATTCAGAAGGCTACAGATGTCAGCGGTGGAGAGAAGAGCCTGCCTCAATGCCCTGAGTGCAGAGAAGAGTACGGCGGTACAGAGACACTGCAAAGGAACTTCAAGCTCTGCGGCATCATAGAAGGCTACAAGGCCGTTGCGCCAGCAGACCACCTGAAGAGAGAGCCGCTGAAGGTGCGCTGTGACCACTGCCTGGACTTAGAGACACTGGCCATCAAGACCTGCCTAAAGTGTGAGGTGTCCCTGTGTGCCAGGCACCTGCAGCACCACACTGAGAGAGGGTCCTTCAGGACCCATGACTTggtggagccccagactgagctGGGCCAGAGAGGTTGTGCCATCCACGGACGCCTGCTGGAGTACTTCTGCGCCAGCGACATGACCTCTCTCTGCGCCAACTGCTTCATTGAGGGCACCCACCAGAATCATGATGTCCTGACGTTCGAGGCAGCCGAGGAGGAAATGAGGCGGGCCCTGGAGATTCAGAGCAAGGCGGTGGCCAACAGGCTGCAGCTGACAGAGACCCTGCTACAGAGGGCTGCTGAGGACCAGGGCACCTCTGAGGCTGTGGGAAACAAGCTGCTGTCCAAGTCTGTGGATTTGATGGACAGCATGGCCGGCCTGGTGAGCAGGTACAAGGACAGGATGAGCCTGCTGCTGGAAAAGGAGAGAGGCCGTCAGAGGGAGAGCTGGCAGAGTGACCTGGGGCTTCTAGAAGAACAGAAGCAGCAGCTGATGGAGGCCCACCAGCGCACCACTGAGGccctcacagagacagagaagtgtCTGTTCATCAACAGGTTCCTGCTAATTGAGCCCCAGCTCAGGGAGGTCGTGACGGGTACCGTGGCCAGAGTGCCCAACAAGGTCCCTCTGAACCCCAAACGGCTCCAGGCCAGCCTGAGGATGGAGGACTTCAGGGCAGAGATGGCTCGGCTCCTCCAGTCTCTCCACGTCCTGCTAAACCCTCTGGAGCTGACCTTTAACCTCAGCACAGCCCACACCAGCCTGCTGCTCTCCAACGACCTGCAGACAGTCAAGTACAGCGGTACCAAGCAGGCCTACGCTGATAACCCAGAGAGGTTCAGTACCGCACCCCAGGTCCTGTGCTCCCAGGGCTTCACCAGTGGGGAGCACATCTGGGTGGTGGAGGTGGGCGACCAGAGCATGTGGTCAGTGGGATTGTGCTACAAGAGCATGCCCAGGAAGGGTGACCACAGCCGGCTGGGGCATAACCCGGCCTCCTGGCGTCTGCAGTGGAAGAACAAGAAGCTGACGGCGTGCCATGCCTCCTCAAACGTGGCGCTGGCGGAGATGGCCAATCAGCCACTGAGGGTGGAGGTGGCTCTGGACTATGAGGGGGGAACACTGATCTTCCACAGCACCAAGGACCGTCGGGAACATCTGCACACGTTCAGGGCTGTGTTCAGAGAGGCTGTGTATCCTGCGTTCAGCATCCTCTCCACCAGAGAACAGTCCTGGATCACGCTACAGAGTGGAGTGTAACCCTCCCTCAGCCTACCACTTAATCCACCTGGGCTTGAAATGCCTTTGCTTCTGACTAACCAAAGAAATACCTTActgattattatgattattacGGATAAATATATGGGTAAAATGGATAAATCTAAATCTCTGTTTGAAAACATCTATGAATATTCAAAAATGTGTTCCATGCTAGTCCTTTAGTTGCTCCTTTTTGTTGCACAGTACATCATCAGTCATTGTCAGTATAGATGTATCTTGTTATTCACAATGAAAGGAATGCCGGCTTCTGATTGAGTTTGGTGCATGGCTAAATTCAGTAAATAGCCATATCTATGTGGTGTTATGCTATTTAGGTGTTTTAGAGCTGATATAGTGCACAAATAATGTGCCATAGTACATGTGAATATCAGCTACTTTATTTCCAAATTTGACAGTTGTTGACAACATGTCAAGAAATGTGTGCGTTGTAATTTTATTTGAAAATCAGTCCACTTTGGAATCATAATGTACAGAATAAACAGTTATATTGCTGTTGTGCTTTGCTGATTTGTTGTCTTTGATTCAAGGCTTGTATTGCTGAATCTGCACAGTCCTTCGTTTGTTGTCAAAATTCCATGTCTTTGCATCCTACATGCACACAAACTTGTGCATTGGCCCAACAACCTACTTTCAGGAGCTAATACTATGAAATATttaacctgtataaataaaaatGAGCAACAGGATGTAGGTCCACAGTTCATTTTAGTTTAAGGCAATGTTCTGTTGTAACCAGACACCAAAGATCATTTTTTGGCAAAAGCTCTAAAACCTTGTGAATGGTATTCTCCGTCACTAAATACATCTTTATTGATGTGGTGGTATTGTGTTCCAATTATTGTTGATGCACTGTCTATTTAAGCAGATTATATTTGTGTACCTGTTTTTCAaatcactactgtaagtcaaataaatcacagtgtgTGCTTATTTAA

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566310.2 True 2677 mRNA 0.50 1 50324145 50326821

Neighbor

gene id symbol gene type direction distance location
LOC110492207 LOC106566895 coding upstream 13100 50241978 ~ 50311045 (+)
LOC100136219 LOC106566896 coding upstream 114948 50121066 ~ 50210247 (+)
LOC110492206 LOC106566897 coding upstream 308622 49996722 ~ 50015523 (+)
znf341 LOC106566899 coding upstream 373093 49939245 ~ 49951052 (+)
tti1 tti1 coding upstream 526128 49789953 ~ 49798017 (+)
LOC110492210 LOC106566890 coding downstream 163416 50490237 ~ 50796195 (+)
LOC110492909 NA coding downstream 611903 50938724 ~ 50939714 (+)
LOC118939554 NA coding downstream 761280 51088101 ~ 51094492 (+)
c16h1orf174 LOC106566886 coding downstream 783287 51110108 ~ 51113467 (+)
nphp4 nphp4 coding downstream 792157 51118978 ~ 51310839 (+)
G1384058 NA non-coding upstream 9782 50313797 ~ 50314363 (+)
G1384076 NA non-coding upstream 28704 50294897 ~ 50295441 (+)
G1384063 NA non-coding upstream 71783 50252012 ~ 50252362 (+)
G1384061 NA non-coding upstream 73230 50249583 ~ 50250915 (+)
G1384055 NA non-coding upstream 83552 50240362 ~ 50240593 (+)
G1384086 NA non-coding downstream 2534 50329355 ~ 50329678 (+)
G1384092 NA non-coding downstream 9033 50335854 ~ 50336083 (+)
G1384093 NA non-coding downstream 9814 50336635 ~ 50336933 (+)
G1384110 NA non-coding downstream 33934 50360755 ~ 50364355 (+)
G1384102 NA non-coding downstream 64880 50391701 ~ 50418540 (+)
LOC110492182 LOC106566913 other upstream 1074270 49202107 ~ 49258042 (+)
LOC110492179 NA other upstream 1290007 49024001 ~ 49034167 (+)
LOC110492164 mitf other upstream 2011329 48282132 ~ 48331926 (+)
LOC110491080 LOC106572377 other upstream 3294953 47026122 ~ 47029192 (+)
G1379959 LOC106567238 other upstream 3375928 46945257 ~ 46948217 (+)
G1384247 NA other downstream 245871 50572692 ~ 50573050 (+)
G1386227 ajap1 other downstream 1199192 51526013 ~ 51526813 (+)
G1386254 LOC106566883 other downstream 1233332 51560153 ~ 51560878 (+)

Expression


Co-expression Network