mad2l2 (mad2l2)


Basic Information

Item Value
gene id mad2l2
gene name mad2l2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51021456 ~ 51031919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566314.2
ctctgtcttagCTAGCCACTGACGACACTTTAGCTAGATAGTTAGCAGAACAAAAAATAATATTGTATTACTTAGCCTAGATAATTGTTTGTACAGTATGTTGACTTTTATTTCAGACCTTATGACATTTTTCAAGGATGAGCATTAGAGCATTAAAAGGGGAAGACCACTAAAAGCCTGGCCATGTGGAGAAGTGCAGCTATTGTGAGGGGCAACTTACCGGTTTAGTCAGAGCCAGCATGAGGGATAAAATTTATCCTGTGTCGtggtgggggagtgccaagatggggGAACGGAGGTTTCAACACAGCGCACACAATACGTCAACTAGTGTGTTTTCAAGATATCAGTGTGCGCCATATAAACGTCATAACCAAGCGACGACAGGAAGCAGTGGATGTAAACAAATATACAGACGTTGCAGCCACCAGAAAATGACAACGCTAACAAGACAAGACCTCAATTTTGgacaagTGGTGGCTGACATCTTGTGTGAGTTTTTGGAAGTGGCTATTCATCTCATCCTCTATGTACGAGAGGTGTACCCATCTGGAATATTCCAGAAGAGAAAGAAATACAATGTACCTGTACAGATGTCATGCCACCCAGAGCTGAACCAATACATCCATGATACTCTTCACTGTGTAAAACCCCTCATTGAGAAGAATGATGCAGAAAAAGTGGTTGTGGTCATCATGGACAAAGAGCATCATCCAGTTGAGAGATTTGTCTTTGAGATTTCACAGCCTCCTCTTTTATCCATCAGCTCTGATACATTGCTGTCACACGTGGAACAGTTACTGAGGGCGGTTATCCTGAAGATCAGTGTATGTGATGCAGTTCTGGAAAACAACCCACCGGGATGTACGTTTACAGTGCTGGTCCACACCAGGGAGGCAGCCACCCGTAACATGGAGAAGGTTCAGGTCATCAAGGATTTTCCATGGATAGTTGCAGATGAGCAGGAAGTACACATGCAGGAGCCCAGACTCATACCCCTGAAGACCATGACATCAGACATTGTGAAAATGCAGCTGTATGTGGAGGAGAGGGCACAAAAGGCTTCATAGATGAAGCTCGACTAAAAAAGATGGCAATCTCTGCACTGCAGCTGCCACAATAATCAACTAGTTGAGGTGTGCATTTGGGAAAGTGGGGATCTCTGGATCTTCATTCTAATGCTTGAACTGTGAAAACTTTGAGAAAAATACTGTTTTTTTGTCATAGTTTGACTTGGCAAGAGGGGATATGCAGAGTCAGTTATCGGTTCAGCACTGTATCATTGCTCATCACAATGAAAATCATTTAGTATGTACATAGTTATTACAGCAAAGCCTAAGGGGAATGATCTGTGGTATAGTGGGCACTTTTGTTCCCATTCTATTTGTTTCCAGTTTCCAAGCAATGTTTAAATGTAccataggctgcgtttacacaagcAACCCAATACTGATATCTTTTcccctaattggtcttttgaccaatcacatctctTGACAGAtcttttttcagagctgatctagTTAAACGAAAGAGCAATTAGTGACAAAAAGATCTGCATttggctgcctgtctaaatgcagccCTTTTGTGTTGTATGAAGCTATGTTTACACTATGATGTTAATTATTGTGTTcactaaaacatgttttttggggCAGTCTCAGGTGGATACGGTCTACCTGGTTAAAGTTCTAGaccagggctctctaaccctgttcctggacggCAGCTCTCGAAGAACAGAGTTGGATAGCCCTGATTCTAGACAGTCGATAACAGGGATGACCAAACAGGTTGCATGGTTTGATATTGTAAGTGTTGAACATTGACATGGTCCATAAGAAAGTACTCAACCCAAACTGCAAAAATACTTTGTGAATAAATGTGGATTTAGTGTTTTTGATTTTAATATTTGAGTTTTGTTTTTTCATAATGCATTCTACTTTGGAAAATAAAGTGTTGAGTCGACTGTAA
>TU1582535
CACTGACGACACTTTAGCTAGATAGTTAGCAGAACAAAAAATAATATTGTATTACTTAGCCTAGATAATTGTTTGTACAGTATGTTGACTTTTATTTCAGACCTTATGACATTTTTCAAGGATGAGCATTAGAGCATTAAAAGGGGAAGACCACTAAAAGCCTGGCCATGTGGAGAAGTGCAGCTATTGTGAGGGGCAACTTACCGGTTTAGTCAGAGCCAGCATGAGGGATAAAATTTATCCTGTGTCGgaataaggcctatTTTTcatttgaagccagaaggaggctattATCAGCTACATTAATACCCTTACTGGACTATT

Function

symbol description
mad2l2 Predicted to be involved in DNA damage response, signal transduction resulting in transcription; positive regulation of transcription, DNA-templated; and regulation of protein metabolic process. Predicted to act upstream of or within cell division and cellular response to DNA damage stimulus. Predicted to be located in nucleus and spindle. Predicted to be part of zeta DNA polymerase complex. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group V. Orthologous to human MAD2L2 (mitotic arrest deficient 2 like 2).

NR:

description
PREDICTED: mitotic spindle assembly checkpoint protein MAD2B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566314.2 False 1977 mRNA 0.42 10 51021456 51031919
TU1582535 True 324 lncRNA 0.38 2 51029981 51031903

Neighbor

gene id symbol gene type direction distance location
LOC110492208 LOC106566894 coding downstream 702683 50314916 ~ 50318773 (-)
itchb LOC106566898 coding downstream 1050163 49950665 ~ 49971293 (-)
e2f1 LOC106566901 coding downstream 1082568 49933079 ~ 49938888 (-)
LOC110491088 LOC106566900 coding downstream 1087706 49927464 ~ 49933750 (-)
LOC110492202 LOC106566902 coding downstream 1140634 49840098 ~ 49880822 (-)
LOC110491089 lrrc47 coding upstream 9204 51041123 ~ 51043794 (-)
LOC110491090 fam57b coding upstream 44859 51076778 ~ 51077359 (-)
LOC110492214 LOC106566770 coding upstream 69864 51101783 ~ 51103933 (-)
dffb LOC106566885 coding upstream 81672 51113403 ~ 51117850 (-)
LOC110492220 LOC106566883 coding upstream 490430 51522349 ~ 51603970 (-)
G1385592 NA non-coding downstream 6041 51015073 ~ 51015415 (-)
G1385591 NA non-coding downstream 6497 51014722 ~ 51014959 (-)
G1385590 NA non-coding downstream 7678 51013544 ~ 51013778 (-)
G1385587 NA non-coding downstream 11407 51009812 ~ 51010049 (-)
G1385450 NA non-coding downstream 101278 50919882 ~ 50920178 (-)
G1385634 NA non-coding upstream 16147 51048066 ~ 51048380 (-)
G1385665 NA non-coding upstream 39947 51071866 ~ 51072238 (-)
G1386030 NA non-coding upstream 273575 51305494 ~ 51340532 (-)
G1386059 NA non-coding upstream 329446 51361365 ~ 51362050 (-)
G1384875 NA other downstream 955639 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 1301917 49576512 ~ 49719539 (-)
LOC110492187 LOC106936674 other downstream 1825130 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 2708498 48282213 ~ 48312958 (-)
G1382721 NA other downstream 3075234 47943379 ~ 47946222 (-)
G1385645 NA other upstream 23712 51055631 ~ 51056061 (-)
G1385888 NA other upstream 58726 51090645 ~ 51128648 (-)
LOC110492226 LOC106572002 other upstream 951215 51978399 ~ 51990025 (-)
spen LOC106566857 other upstream 1386957 52379551 ~ 52428869 (-)

Expression


Co-expression Network