LOC110491089 (lrrc47)


Basic Information

Item Value
gene id LOC110491089
gene name lrrc47
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51041123 ~ 51043794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110491089
ATGGATGTTCAAGAGAGTTGGCCAGAAATAGAGAAAGCCGCAAAAGAGAAGAGACGCGAACTGGTCCTGCAAGGTGCAGTTATCGATGAAAAGATATCCTCGAATGGAGGTCTGTGTTCTGCAATCTATTCTCTCAAGCTCCTAAATTACCTAGAAATCATCCAATGCCCGAGTTTGACAGAAATTCATGGAGACATAAAAAACCTGACCACCCTTACAAGCTTGATTGTTTGTAGGAATAAGCTTTCCTCTATTCCCAAAAATCATTGGACATTTGAAGTCACTGAAAGTCCTCGACATTTCAGTCAGCACCCTGAAAGCTTTGCCTGATGAGAGAACCCAGCTAAGCGAGCTCAATACACTCAACGTGAGCAGCAACAATATCAGTCACTGCCAGGTGGACTGTGTCGTTGCACGAAGCTCTCCATCATCAACATATCAAAAAATGGCATCACTCGGTTCCCTGATGACTTCTATCGCCTGGATCTCCTCAGCACTGTCGTTGCCTCTGAGAATTACATTGAAGACCTGAGTGGAAATGTTCACATGCTTTCTGCTCTAAAGGGGTTTTGGACCAACAACAAGCTCCGTGACATCCCCTACGAGTTGAGCGACTGCTGAAGGAGATCAACTTCAAGGGAAACAAACTAAAAGACAAGCGGCTGGAGAAGATGGTCAACGGTTGCCAGACCAAGTCCATCCCGGACTACCTTCGAGCTGGTGGCCGAGGAACAGGTAGCAAGCAGGCCGACGGGGGCCGGAACGCAGAGAAGACCCAGACCAAAAAGCAGCGCAAGCAGAAGAagaatgaagaggaggatgaggatgaggtggATAAGTTGAACCGGCTGGTGGTGAAGGTGCTTCACATTTCTGACAACCACGGGGCGTTCACTGTAAAGGTGGCCAACGAGCTGAAGGATGTGAGGCCATACTTGGTGTGCTATGTGGTCAGAGGCATGAACTTCAGGTCCGGGAATGCGCTTAAGAGATTCCTGGCTGCTCAGACCAAATTTCACAATGACCTATGTGGTAAAAGGACAACTGCAACCATCGCAACTCACAACATGCAGCTACTCAAGGGACCTCTCATGTATGATGCCAGGCGTCCTCCCATATTAAAGAGAGTCCCCCTGGGCCGTAAGGAGATGACTGCGGTGGAGCAGTTGCAGCTGGAGTGGGAGAGGACCAGAGGtaacagaggaagaggcagaatGTTTCTGAGTATTAG
>TU1582553
CTCTCAAGCTCCTAAATTACCTAGAAATCATCCAATGCCCGAGTTTGACAGAAATTCATGGAGACATAAAAAACCTGACCACCCTTACAAGCTTGATTGTTTGTAGGAATAAGCTTTCCTCTATTCCCAAAAATCATTGGACATTTGAAGTCACTGAAAGTCCTCGACATTTCAGTCAGCACCCTGAAAGCTTTGCCTGATGAGAGAACCCAGCTAAGCG

Function

symbol description
lrrc47 Predicted to enable RNA binding activity and phenylalanine-tRNA ligase activity. Orthologous to human LRRC47 (leucine rich repeat containing 47).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 47

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110491089 False 1231 mRNA 0.42 4 51041123 51043794
TU1582553 True 220 lncRNA 0.42 1 51043445 51043664

Neighbor

gene id symbol gene type direction distance location
mad2l2 mad2l2 coding downstream 9204 51021456 ~ 51031919 (-)
LOC110492208 LOC106566894 coding downstream 722350 50314916 ~ 50318773 (-)
itchb LOC106566898 coding downstream 1069830 49950665 ~ 49971293 (-)
e2f1 LOC106566901 coding downstream 1102235 49933079 ~ 49938888 (-)
LOC110491088 LOC106566900 coding downstream 1107373 49927464 ~ 49933750 (-)
LOC110491090 fam57b coding upstream 32984 51076778 ~ 51077359 (-)
LOC110492214 LOC106566770 coding upstream 57989 51101783 ~ 51103933 (-)
dffb LOC106566885 coding upstream 69797 51113403 ~ 51117850 (-)
LOC110492220 LOC106566883 coding upstream 478555 51522349 ~ 51603970 (-)
LOC110491091 LOC106566924 coding upstream 647089 51690883 ~ 51717957 (-)
G1385592 NA non-coding downstream 25708 51015073 ~ 51015415 (-)
G1385591 NA non-coding downstream 26164 51014722 ~ 51014959 (-)
G1385590 NA non-coding downstream 27345 51013544 ~ 51013778 (-)
G1385587 NA non-coding downstream 31074 51009812 ~ 51010049 (-)
G1385634 NA non-coding upstream 4272 51048066 ~ 51048380 (-)
G1385665 NA non-coding upstream 28072 51071866 ~ 51072238 (-)
G1386030 NA non-coding upstream 261700 51305494 ~ 51340532 (-)
G1386059 NA non-coding upstream 317571 51361365 ~ 51362050 (-)
G1386060 NA non-coding upstream 332918 51376712 ~ 51384868 (-)
G1384875 NA other downstream 975306 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 1321584 49576512 ~ 49719539 (-)
LOC110492187 LOC106936674 other downstream 1844797 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 2728165 48282213 ~ 48312958 (-)
G1382721 NA other downstream 3094901 47943379 ~ 47946222 (-)
G1385645 NA other upstream 11837 51055631 ~ 51056061 (-)
G1385888 NA other upstream 46851 51090645 ~ 51128648 (-)
LOC110492226 LOC106572002 other upstream 939340 51978399 ~ 51990025 (-)
spen LOC106566857 other upstream 1375082 52379551 ~ 52428869 (-)

Expression


Co-expression Network