LOC118939554


Basic Information

Item Value
gene id LOC118939554
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51088101 ~ 51094492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036540.1
AGAAGTCAAAGAAGGGAGGCGCACAGcaggaggggaagaaagaggagaTGGAACAGCTGGCTGCCTTGAAGGAGATCAGTGTATCAAAAAGGCTCCCCAAAACAACCTGGCAGATGCAGGAGATGACAAGTCTTCAGTTGTCAACCACTTAGACAAGATGAGTCCTTCACTGAAGATGGACTGGACCTGCACTATTGCTGCGCCGCTGTGGCCAATGTAGACAGGCCTGGAAGGCTCACCTCATGGGCAGAGAGGGCTGTAAACAGAACTCACGGAGGACTGTGGTATCGCAGTAAGCTCAGCAGGCACAAGATGTCCTTTGTGTCCAATCAAACATGCATATGTTGACCAATGGGTAAAATTGTATGTTTATTGTGTAGATCCTCCTCTAAATAAACAATGGTCAAACCTCATGTCTCTAT

Function

NR:

description
PREDICTED: centrosomal protein of 104 kDa isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036540.1 True 422 mRNA 0.48 5 51088101 51094492

Neighbor

gene id symbol gene type direction distance location
LOC110492909 NA coding upstream 148387 50938724 ~ 50939714 (+)
LOC110492210 LOC106566890 coding upstream 291906 50490237 ~ 50796195 (+)
LOC110492209 LOC106566893 coding upstream 761280 50324145 ~ 50326821 (+)
LOC110492207 LOC106566895 coding upstream 777056 50241978 ~ 50311045 (+)
LOC100136219 LOC106566896 coding upstream 878904 50121066 ~ 50210247 (+)
c16h1orf174 LOC106566886 coding downstream 15616 51110108 ~ 51113467 (+)
nphp4 nphp4 coding downstream 24486 51118978 ~ 51310839 (+)
cfap74 cfap74 coding downstream 643103 51737595 ~ 51787114 (+)
LOC110492222 LOC106566880 coding downstream 708569 51803061 ~ 51862196 (+)
nadka nadk coding downstream 780648 51875140 ~ 51915893 (+)
G1385637 NA non-coding upstream 38010 51049794 ~ 51050091 (+)
G1385606 NA non-coding upstream 49606 51038263 ~ 51038495 (+)
G1385604 NA non-coding upstream 51694 51036205 ~ 51036407 (+)
G1385596 NA non-coding upstream 52669 51032826 ~ 51035432 (+)
G1385599 NA non-coding upstream 66767 51021140 ~ 51021334 (+)
G1385878 NA non-coding downstream 303720 51398212 ~ 51398494 (+)
G1386082 NA non-coding downstream 313802 51408294 ~ 51408498 (+)
G1386139 NA non-coding downstream 352736 51447228 ~ 51447450 (+)
G1386143 NA non-coding downstream 355058 51449550 ~ 51449757 (+)
G1386171 NA non-coding downstream 375573 51470065 ~ 51470298 (+)
G1384247 NA other upstream 515051 50572692 ~ 50573050 (+)
LOC110492182 LOC106566913 other upstream 1838226 49202107 ~ 49258042 (+)
LOC110492179 NA other upstream 2053963 49024001 ~ 49034167 (+)
LOC110492164 mitf other upstream 2775285 48282132 ~ 48331926 (+)
G1386227 ajap1 other downstream 431521 51526013 ~ 51526813 (+)
G1386254 LOC106566883 other downstream 465661 51560153 ~ 51560878 (+)
LOC110492224 NA other downstream 824496 51916126 ~ 51920772 (+)
G1386998 NA other downstream 1187701 52282193 ~ 52286457 (+)

Expression


Co-expression Network