LOC110492214 (LOC106566770)


Basic Information

Item Value
gene id LOC110492214
gene name LOC106566770
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51101783 ~ 51103933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566315.2
AAAAGTGAGTAAGGGGAGAAGCTCGTAGGCGACAGTCACTTTTCAAACCAGTCTGCAGGTGGTAGACTATCTCTCAtcgaatattttttatttttttttgcatgaTGTAACAAAGATTGTTTTCTCAACGAAAATAAAGTAATTGTAAGGGAATAGCACGGTGGCGTAGCCAGTTTATTTTCAATGTAGCTGGACACGGAATAGTTGCTCTGTTGACTCTGTAGCCAGCCTATATTTTACACGCAGCTCTCCATTTTTCAAAGGATAATGATGGACTTCAAATGGACACTAATGAGTAATTAAATGCTATGAAAATAGGGGTGCCTATTCAGTTGAAGTATTTCTCATTCATTCATACGCGTTTGGCGCTATAATTATGGATAATTTTTTCAGGAGAAAGAGGATATTGAAAACTCTCCTGAGCTTGTCTCTCGTTTTTGCGTCTTTAGTGATGATTTCAAAGTTCAAGCTTGTGGATAACAGCATCAAGGACGATATGGAGGTTAAAAGCATGGGACACGCCGGTTGGTGTGGACCTGAGTGTGATTTATACAAAGGAAAACGCATATTGAAAAGCAGTTTGGGAAACTACTCGCCGCCAGTTATTGGTGATGATTTGGATGCGCCACGGATGACCGTCTCCAACACTACTGCTTCTACTTGGGATGTACACGTTATGAACTGCAGTGAAGATTCAGCCGTAAGGGAAAACGATTGGTTTCGACGTTTGGACACGAGGTTCCACCAGTTTGTGTTGCATAGACATTGTCGATATTTCCCAATGTTGATAAACCATCCGGATAAGTGCAGGAATGGAGACGTGCACTTGCTTATGGTGGTGAAATCCGTTATAGAACAGCACGATAGGCGAGAGGCAGTGCGCAATACCTGGGGTAGGGAACAAACTATTGATGGTAAGAGAATAAAAACGCTGTTTCTCCTTGGAAGCGCTACAAATGGCAAAGACACTAAAAACCTTCAAAAGTTGATTGAGTATGAGGACATGATATATGGAGACATTCTCCAATGGGATTTTATGGACACATTTTTCAACCTCACCTTGAAAGAGGTAAATTTTCTGAAATGGTTTGATATTCACTGCTGCAGTGCCAAGTTTATATTCAAAGGGGATGATGACGTTTTCGTGAATACAAATAACTTGCTGGAACTTATTCGTTTCAAGACTGAGGACCGCAAAGTTGTAAATGTATTTGTTGGGGACACCATCTCCAAAGCCATCCCCATCAGAAACCGCCAGAGTAAATACTACATCCCCAAAGAGCTGTTTGACAGACCGTACCCACcttatgttggtggtggtgggtttTTAATGTCCTCACAATTAGCTCGGAGACTGTTCGTGGTTTCAGAGGACTTGGAGCTCTATCCGATTGATGATGTCTTTTTGGGAATGTGCCTCCAGAAGCTTCACTTGGCACCTGAGATGCACCCGGGATTTAGGACCTTTGGCATCATGAAACGCAGAGTGAGCCCAATGAACAGCGAACCGTGCTTTTTCAAAAACCTAATCGTAGTCCATAAACTGAGCCCTCAGGAGCTACTCATGATGTGGAGCGTAGTAGAAAATAAGGAGCTGGTTTGCGCCAAAAGGACTGCACCATGAGTGTCAACCTACAGCTCAAAAGGACTCAAAGGTTATGCAGAAATATTGTAAGATTTTATAATTGAATTGTAATATTTGTATGTAGGCCTAGTAGGGCACTAAAAATATCCAACTAAGAAAGAATGTGAGAACAATCATGcagtgattttttttaaacaaatgtttATGAATGACATTCTTTCATTCTCACCTCcctgtttgtaatgttttttcTAATGTAGATGGGTAGACCCAAATCCCAACAGGAAAACCAAAAAAGTAAATGCACATTCCTTAGGTCTACAAGATGAACCACTTTTTCAGCCAAATCTGTAAATAAATGGCAGCCTTTGACACTGAAAAACCCTTTTCATGCTACAGTTTTAGTGCTTTTGAGATGATGGATGTGTTTGTAACACTGAAAAGGTGGAGATTACATGAAAATAGAATTAGGTACAAAATCTATAACACATTGAATTATATTTTAAGAGTCAAAACTTGTTTTTGGTTTGATGTTTGTAACAGATTCAATAAATATGTATTTGTTA

Function

NR:

description
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566315.2 True 2151 mRNA 0.40 1 51101783 51103933

Neighbor

gene id symbol gene type direction distance location
LOC110491090 fam57b coding downstream 24424 51076778 ~ 51077359 (-)
LOC110491089 lrrc47 coding downstream 57989 51041123 ~ 51043794 (-)
mad2l2 mad2l2 coding downstream 69864 51021456 ~ 51031919 (-)
LOC110492208 LOC106566894 coding downstream 783010 50314916 ~ 50318773 (-)
itchb LOC106566898 coding downstream 1130490 49950665 ~ 49971293 (-)
dffb LOC106566885 coding upstream 9658 51113403 ~ 51117850 (-)
LOC110492220 LOC106566883 coding upstream 418416 51522349 ~ 51603970 (-)
LOC110491091 LOC106566924 coding upstream 586950 51690883 ~ 51717957 (-)
LOC110492221 LOC106566882 coding upstream 618037 51721970 ~ 51738292 (-)
LOC110492226 LOC106572002 coding upstream 876681 51978399 ~ 51990025 (-)
G1385665 NA non-coding downstream 29545 51071866 ~ 51072238 (-)
G1385634 NA non-coding downstream 53403 51048066 ~ 51048380 (-)
G1385592 NA non-coding downstream 86368 51015073 ~ 51015415 (-)
G1386030 NA non-coding upstream 201561 51305494 ~ 51340532 (-)
G1386059 NA non-coding upstream 257432 51361365 ~ 51362050 (-)
G1386060 NA non-coding upstream 272779 51376712 ~ 51384868 (-)
G1386064 NA non-coding upstream 282293 51386226 ~ 51386542 (-)
G1386067 NA non-coding upstream 286343 51390276 ~ 51390551 (-)
G1385645 NA other downstream 45722 51055631 ~ 51056061 (-)
G1384875 NA other downstream 1035966 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 1382244 49576512 ~ 49719539 (-)
LOC110492187 LOC106936674 other downstream 1905457 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 2788825 48282213 ~ 48312958 (-)
spen LOC106566857 other upstream 1314943 52379551 ~ 52428869 (-)
LOC110492250 LOC106566852 other upstream 1467777 52566433 ~ 52577143 (-)
G1388236 NA other upstream 1927999 53031932 ~ 53032921 (-)

Expression

LOC110492214(LOC106566770) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110492214(LOC106566770) Expression in each Bioproject

Bar chart with 21 bars.
LOC110492214(LOC106566770) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network