c16h1orf174 (LOC106566886)


Basic Information

Item Value
gene id c16h1orf174
gene name LOC106566886
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51110108 ~ 51113467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566318.2
CACTGAGCGTAGGTGGCAGCATAGAGACCCTGGTGGATGACTGAGATAATGTCGCAACTGGCCCCCTctcaattttgactttgtggctgtgctaacTAGTGGAAGCCAGCATATCACCTCAATCAGCATTGAGCCCGGTGTAAGGTCGAGGTAACCCTACTGACGCATATGCTGTTTTGTTCTCCAAAACTGGAAACGGAAAATAATTACTTGCACGTGACTTCTATACAGAAACATTTAGTCGGGTTCGGAAGCTTTCTCGGTTCACCACGGCGGCGCTTTATCAGAACCACGATTTTACAGTTTGCTGACTACCTGTATTTACAACACAATTACTGGATTTTATTAGCTAATTTGGCTACATCCACTGACTGAAAAAAGTGACTGTTTACAAGATTGCAAGCCAGCGACCGACATAGTTATCCAGATGCCGAGTCGAGTTAGCAACTTGAAGCGGCGAAAGGGGATGTGCGCTGTTTCCTCAAGCAGGGTCCATCTCGAGGTGAAGAGTTCAGATAAGAGTTCAGGGAAGAGGAGGCATGATAAAAAAATGAAAATTGAAGACTCAAAAACAGAAATGGCCCTGAATGACTGGATGGTTGGTGGTTGTAGGGAGTCAACAACCATTTCTGAGAGGCTCAGCTGCGATGGTTGCGAGAGGCCTGAAAAGACAAGTTGTGGAGCACCACCAGACCTGGAGGAATTGTGGGAGGGTAAAGAGAACGGTGTGCGATTAGAGTTAATTTACTGTCGAACAAACGGGTTGCCAGAGAAGACGGAGGATGACGAAACAGAAGCGGGTGTTGTGATTGACAAGAGCGTCTTCCTTGATGATGACAGTAACCAGGTTCTTCCTGTGGAAAAGTTCTTCGGAAATATGGAAGTTGTGCAGGATTGTCCACGGAGATCTACGGCCACTTCGACCTTCAGCAGGAGGGAGCACAGGAGACGACAGTACTATGCCAAAGAGGACAGTGATGAAGAGGGCTACACAGAAATGCAGCAAGATGAAATAGTTGGCACTTAATTTACAGAAATAACTCATTCCTATCAATAGGATGGAATAAAACTTGTCCTTAAACGACCTTAACAAGCCTAACGTCACAGTTGAGCCCAATAAAGTGGATTCGTTCAACAGAACCAGGGTATCAAGTTAATGTTTTGCCAGCATATACCCTAAAGTTATACATCTTTGTATTAATATTTGCACTAACAAAACTTCACTTTTCAATTAtctatactgtatattgtttaaATGGCACAGGTTAAGTGCTCAGATTGTTTTATTTATATTGTATCTTTTACAATATTGTTACTGAATGCCTTATGTATGCACAATATTTGTAGTCAAAGTTGCATTGCCAATACAAGAACTTAAATGTTCAA

Function

NR:

description
UPF0688 protein C1orf174 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566318.2 True 1386 mRNA 0.43 4 51110108 51113467

Neighbor

gene id symbol gene type direction distance location
LOC118939554 NA coding upstream 15616 51088101 ~ 51094492 (+)
LOC110492909 NA coding upstream 170394 50938724 ~ 50939714 (+)
LOC110492210 LOC106566890 coding upstream 313913 50490237 ~ 50796195 (+)
LOC110492209 LOC106566893 coding upstream 783287 50324145 ~ 50326821 (+)
LOC110492207 LOC106566895 coding upstream 799063 50241978 ~ 50311045 (+)
nphp4 nphp4 coding downstream 5511 51118978 ~ 51310839 (+)
cfap74 cfap74 coding downstream 624128 51737595 ~ 51787114 (+)
LOC110492222 LOC106566880 coding downstream 689594 51803061 ~ 51862196 (+)
nadka nadk coding downstream 761673 51875140 ~ 51915893 (+)
LOC110492224 NA coding downstream 802659 51916126 ~ 51920772 (+)
G1385637 NA non-coding upstream 60017 51049794 ~ 51050091 (+)
G1385606 NA non-coding upstream 71613 51038263 ~ 51038495 (+)
G1385604 NA non-coding upstream 73701 51036205 ~ 51036407 (+)
G1385596 NA non-coding upstream 74676 51032826 ~ 51035432 (+)
G1385599 NA non-coding upstream 88774 51021140 ~ 51021334 (+)
G1385878 NA non-coding downstream 284745 51398212 ~ 51398494 (+)
G1386082 NA non-coding downstream 294827 51408294 ~ 51408498 (+)
G1386139 NA non-coding downstream 333761 51447228 ~ 51447450 (+)
G1386143 NA non-coding downstream 336083 51449550 ~ 51449757 (+)
G1386171 NA non-coding downstream 356598 51470065 ~ 51470298 (+)
G1384247 NA other upstream 537058 50572692 ~ 50573050 (+)
LOC110492182 LOC106566913 other upstream 1860233 49202107 ~ 49258042 (+)
LOC110492179 NA other upstream 2075970 49024001 ~ 49034167 (+)
LOC110492164 mitf other upstream 2797292 48282132 ~ 48331926 (+)
G1386227 ajap1 other downstream 412546 51526013 ~ 51526813 (+)
G1386254 LOC106566883 other downstream 446686 51560153 ~ 51560878 (+)
G1386998 NA other downstream 1168726 52282193 ~ 52286457 (+)

Expression


Co-expression Network