LOC110492220 (LOC106566883)


Basic Information

Item Value
gene id LOC110492220
gene name LOC106566883
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51522349 ~ 51603970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566322.2
GAGAGGAACGGAAAGGCACGGAGATATAGCACGGTGTGATAATattgcactctctctcttcaaATGACAAGTGCTTATTTTTCCCTATACCGCTTACCACACGCAACATCTCGCGCTGACGCGCTCACAGACTCTCTTCCAAAATAACCCGTTCTCTCACCTAGTCTCCTGTttctttttaaaaacattttaaccTACTACTTACATTCATTTATTCAGAGATGTGCGAAATGTGGAATTTTGGCCAACGGTGACCTATCAGCATTTCGAAATTCTTCGGCGCATATTTTCGGGATTGACTGTTATAACCGTCCAAGCTGGGTATATTTCCTGATGTTTTGCTATGCTCTGCTTCTCAATAATGTAGAAAAGTGCGTGGTCATTTTCAGCGCCGAATCCACTGAGGATGCCAACGAATCACCTTGCCTCTCTGGTGTTCTTTTTCATAGCTTTTTGACTGTCTAGTGGAGTAAATTCGATGATTTATATAAAGACAAAGTTTGACCGACACAAGTGGTCAGAGGACACCTTTTGGTAAAAGCACAGTGGACCACCTGTCCACGGACTCGGTGCGTCCTTATCAACCTTATCAAATTAATGGGAAGATAATTGCCAAGTTAGAATAAGCAAGCAACGTCCAAGATATTTGCTTATTCTCTCCTTTGGTGGTGTAATATCAGGCTTGACATCATATATGGAGTAATTGTATATGCGCAATGTTGAAGGATATAGCCTTAGAATGTTTGCATTAATGACATTTGGAGTAAGGTTCGTCACTTGAGTGTATTAGCCACTATCGACTTTTGTGGAAGCCATCTAAATGGGAGAATACCTGAAGAACTGACTCGAAATTGTTGTCGGGAAAATGTGGATAAAACGGTGTATTGCACGCAGTCAGATGTCGGCTTTACGGCCGGGGAGCTGTGTAGGGCTTCGGGTGTGGATCCTCCTGGCCATGACCCACCTCACCCTGGATTTTTCCCTGTGTAGCCCCCTCAGTCAGGGCCTAGGAATCAAGCTCATCCCCAAACCTGTGCCTCGTCCCCGGCCCCGCTCGGCGCCCCTCTGGGATACTCCCAACATGCTCCATTGGAGGACAGTGAGGCCGCTGGCGCGCCGGCTCCTCAACCCCGTCCCACCGCCAGCCAATATGGGAGGGCCAGGGCCAAAGTTCAGGGGTCAAAAGCACAGGAGACTGGCACATAAAGGACAGCCATGTAAGGAGTGCTGGTTGAAATACACATCCACCGAGGTGGGGGATTTAGCAGCGGTGCTAGATCTTCCCATGGGGCACAAAACAGACGTGGTGAGGTTGTTACTGAGGGCGAGGAGGCAGCTGAAATGGGACAGCGATGACAAATCGCAGGACGGCAGGACCACGACGGTGGCTGGATATATCGACTGGGGACCCACGGGGACAGAGGACAACTTTGAGAACGGTGAGGGTAAAACGGCGGCCAACTCCACGCTGTCCACCAAGGCCTTGACCACTGCCatggccaccaccaccaccaccactaccaagagCCCCCAGAGGACGTTCGCAGTGGTGACCACCCCTCACCCCAGAAGGCTGAGCACCACCAAGGCCAGCGTCAGTCTAGGGGAGACTGTCAAACCACCAAAGCCATATGGAGATACGTCAGGTCTGGCAGTTCACCAGATTATTACAATCACTGTGTCTCTCATTATGGTCATCGCAGCCTTGATAACTACACTTGTCCTTAAAAACTGCTGTGCACAGTCGGGGAATGGCCGTCACAGTAGCCATCAGCGGAAGATCCATCAGCAGGAGGAGAGCTGTCAGAACCTGACCGACTTCACCCCTGCCCGCGTGCCCAGCAAGGTGGACATCTTCACCGCCTACAACGACAGCCTGCAGTGCTCGCACGAGTGTGTGCGCACCGCCGTGCCCGTCTACACGGACGAGATGATCCAACAGACCCCTATATACAAGACCACCTACAATGGAAATAGACCTTCTCCCACTGAAAGGCAGCTGATTCCTGTGGCCTTTGTGTCAGAGAAGTGGTTTGAGATCTCCTGCTGACCAGTTGAAGTCTTTTTTACGTCACGTGGGTGGAATAGACTTCCTGTATTTATGCTCTGGACACTTTGGTAAACTTTTCCAACCATGAGAAAGAAGTGACTCAAACAATGGCCAATTTTGTAAGATAGtgggaactctctctctctggacactGATGAAGATATTTATTTTTCTAAAAATGATGACAAACCGAGCAGCCATACCGCTGCCACTTCATATTATTATCCAGAGACCTGTGGTAGTTTAGATATGTAGTTAGAGTTAATGTGTAGCTATATTACTGGATGTGTAGGGGAAGACCATTGACGTCAGCGACACCTTGAAGAAGACTAGCTGCCTTGGAGAGCTAGGAGACTCTGAGACGCTGCTCACAGTGGAAGAAACTGAGCTGTATTACTGAACAATGTGCCAATAATGCCACTATGTGCCACAATCTGTACAGAAGGAACTTTCGACAACAATTTATGGACAACTAAAATATTGCTATATTAACTCTGTATCAACCCAACTCCatctttttttaaagaaaagtgaagaaaaaaaatgttataAGTATTTGAATATCTTTTCTGATGTAGTTTTAAGAATTGTGTTGCAAAGTCCCAAAAATGTTTATTATATGAAGCACTATTCATTGAGgccaagaagaaaaaaaagaataatgtTAAATGCTTTATCCAACACTTacatttaaggcattgtttaagGTCCCATTTTAAAACCAGAATAGTCTGTCTATTTTTATACATAAAAAAGAGGTCAGTCACAACCCAAGCAGTGCAGTTCCCATGCCACACAATGTTTGGACTGTTAATGACGTCCCGCTGTCCAATCAGATATTAAAGCAAAGGGGACGATTTCAAAACACGTATCGAATCCAAGCCCAGATTAATTCCCCATTCGGTATGACCTATTTCCCAGTGGTTTTTGATTGTGCTTACTACATTTCTTCAAAACTTCTGTCTCGATGGCTGTCGAACAGTACATACCCTATATCCTGTTGTGGTCAGTTCAATCTGAATGGTTATCCAGATAGCTAAGGCAAATAGAGAGAATTAGCAGTATGTTTACATATGTACTGACTCAGGTCATGTCTAATATATAAGTCTTCATTTCATCTTCCATCCCAAGCATTATTCACAAGTGATAAGACATGATAAGTTACTATATGAGTGGTGGTAGGATATGAGCAGTACTGCACAAGGGTGTCAATTTAGAATTAACTTGTAAGAATATAATTATTCTAACTCTACAATTACGGTTAGTGAGAAATATTGAATATCTCCTCtcaactacagtgcattcggaaagtattcagaccccttcactttttccacattttgttatgttacagccttattctaaaattgatattttttccccctcctcaatctacacacaa

Function

NR:

description
adherens junction-associated protein 1-like

GO: NA

KEGG:

id description
K21387 AJAP1; adherens junction-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566322.2 True 3452 mRNA 0.45 6 51522349 51603970

Neighbor

gene id symbol gene type direction distance location
dffb LOC106566885 coding downstream 404499 51113403 ~ 51117850 (-)
LOC110492214 LOC106566770 coding downstream 418416 51101783 ~ 51103933 (-)
LOC110491090 fam57b coding downstream 444990 51076778 ~ 51077359 (-)
LOC110491089 lrrc47 coding downstream 478555 51041123 ~ 51043794 (-)
mad2l2 mad2l2 coding downstream 490430 51021456 ~ 51031919 (-)
LOC110491091 LOC106566924 coding upstream 86913 51690883 ~ 51717957 (-)
LOC110492221 LOC106566882 coding upstream 118000 51721970 ~ 51738292 (-)
LOC110492226 LOC106572002 coding upstream 376644 51978399 ~ 51990025 (-)
LOC110492229 LOC106566874 coding upstream 394588 51998558 ~ 52069366 (-)
LOC110492230 NA coding upstream 469770 52073740 ~ 52077554 (-)
G1386287 NA non-coding downstream 1032 51516635 ~ 51521317 (-)
G1386218 NA non-coding downstream 12379 51509743 ~ 51509970 (-)
G1386166 NA non-coding downstream 56757 51465388 ~ 51465592 (-)
G1386157 NA non-coding downstream 63399 51458742 ~ 51458950 (-)
G1386146 NA non-coding downstream 71607 51450502 ~ 51450742 (-)
G1386368 NA non-coding upstream 21347 51625317 ~ 51625782 (-)
G1386646 NA non-coding upstream 53487 51657457 ~ 51657722 (-)
G1386650 NA non-coding upstream 57092 51661062 ~ 51661277 (-)
G1386667 NA non-coding upstream 79393 51683363 ~ 51683566 (-)
G1386668 NA non-coding upstream 79747 51683717 ~ 51683923 (-)
G1385888 NA other downstream 393701 51090645 ~ 51128648 (-)
G1385645 NA other downstream 466288 51055631 ~ 51056061 (-)
G1384875 NA other downstream 1456532 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 1802810 49576512 ~ 49719539 (-)
spen LOC106566857 other upstream 814906 52379551 ~ 52428869 (-)
LOC110492250 LOC106566852 other upstream 967740 52566433 ~ 52577143 (-)
G1388236 NA other upstream 1427962 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 2126367 53730164 ~ 53757019 (-)

Expression


Co-expression Network