LOC110492221 (LOC106566882)


Basic Information

Item Value
gene id LOC110492221
gene name LOC106566882
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51721970 ~ 51738292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566323.2
GCAACGCAGTGAGAGACAGTTTAGTGTGGTCCTCTCTCTCGAGCAAGTGCTGCGAAAGGGGAGCGCAAGAGTACGCTCCAGTTAACTAGACTGCTGTTCTCGTCTGAGCAAAGAGTTGACTCCGTGCGTTCTGTACGCTGGGCTGGGACAGGGACAAGAAGAGGCGCGCGTGTGTGAGCAGATCATGAGTCATCACAACAGTTTACTTAATCATGATCTTCCTCCACATTATGGGACCGTAGGAACACAGTTTGTGCGATCCCCTTCGGTTATTTGATCGTTTCTTGTTGTGGGAACTTTGGCCAGCTGTTGAAATGGACATGATAACTTTCATGTTGGCGAGCCTTGCCCTCCTGAATATCAGGGACAACATTTTCACCAGGGCCATGCTGAGTGACATTGGGGACTATATAGGTTCAGACATACAAATTTCCTGGTTGCCTAATCTGGATGAGTTAATGAAGGGCTATGCGCGAAATTTTCGCCCTGGGATAGGAGGCCCACCTGTGAATGTTGCCATGGCTATTGAAGTAGCCAGTATTGACCACATCTCTGAAGCCAACATGGAGTACACCATGACAATTTTCCTGCGTCAGAGCTGGCGGGACGACCGCCTGTCCTACAACCACACCAACAAGACCCTGGGGCTGGATAGCCGCTTCGTGGATAAACTCTGGCTGCCCGACACATTCATTGTCAACGCCAAGTCCGCCTGGTTCCATGACGTCACCGTGGAGAACAAGCTGATTCGCCTGCAGCCTGATGGGGTCATCCTTTACAGCAGCCGGATCACCTCGACTGTGGCGTGTGACATGGACCTGACCAAATACCCCATGGATGAGCAGGAGTGTATGCTGGACCTAGAAAGCTATGGCTACTCCTCAGAGGACATTGTGTACCACTGGTCTGAGAGTCAGATACACATCCATGGACTGGACAAACTGGAGCTGTCCCAGTTCACCATCATCGACTACAAATTTGTCACGGAGACGCTGAACTTCAAATCCGCCGGACGTTTCCCGCGGCTCAGCCTTCGCTTCCAGCTGAGACGTAACCGAGGCGTCTACATCATTCAGTCCTACATGCCCTCCATCCTATTGGTTGCCATGTCCTGGGTGTCCTTCTGGATCAGCCAAACAGCAGTCCCGGCTCGGGTATCCCTGGGGATCACCACTGTGCTCACCATGACGACTCTGATGGTGAGCGCCCGCTCATCTCTCCCTCGAGCCTCGGCCATCAAAGCGCTGGATGTCTACTTCTGGATCTGCTATGTGTTTGTGTTCGCCGCGCTCATAGAGTATGCCTTCGCTCACTACAACGCCGACTACAGGCTCAAAGAGAAGGCCAAGAGCAAGGCCAACAAGATGAGCTCCGAGtCAGTCGTAAAGAATGGGAAACAGGCCATGGTGCTCTTCTCCCTGTCCGTGGCTGGAATGAACCAGGGCCTGATGGTGTCCAGCCGCCGTCCGCAGCGCTCCGGCGCCGAGACCGCAGAGGAGGAGGACGTGGAGCCCAGGAGGGTGCGGGGGACCACAGcgtcagaggagagagaagaggataagaAGTGCTGTAGTTGTTGTTCCAAGTGCTGTTGTGCTTGCAAGCCCCTCCAAGCTGACACCATAGATGTCTACGCCAGGGCTGTGTTCCCCGCCACCTTCGCCATCGTCAATGTGATCTACTGGGTGGCGTACACCATGTGAGTTGGGAGGACTAAGGATGGACAGGCTGGCACCACCAAGGACGGGAGTACTGTACATAGAGGAAAATCATGCCGCTTTGAATCCTGGGACTTATATAGGGGCACCGATGTAAACAAGGCTTCCTTAAGAAGAACTGGATTTACGTATAATATGGTGAAGTAGGGACCTGGTAAATAGCAGATAAAGTACAGTGAATGGACGAACAAAATCAGATCAGGTATATGGATATGTTCTGAAGTACAAGTTATGTACAAGGGAGCCTTGAGGGGTAGTCGATGTCTTATCCTCAGTGAGGCTCACTGTATGATAGCCCAGCTGCTGACTTTTATCTCCAAAAACCTTCACTAGCCACCCAAACTCTACTGCTGCAATCCCCTTAGATACTGATTGCTGCCCACTAAGCCATAGCAATAGACTGACGTTCAGCTATGTCCTTTTACTGTACATGTATGAACTCTGCTCACACCAGCAACATACACAGCACACTAATGTGTCATTGCTGAAAACTAATGTGCACAACAATTGTTGTTCGCTTAACTCACAAACACATCTCATGTGATGGACTAACTgttgaaaacaaaaacatgtcCAGACTTCATGATGATAAGATGCGGTGTAGTCTATTTGGCTGCAGGGCTTATTCTCCCCACCGCCCCTCTTCCCCTCTACCATCCCACTGCCTTCCCCCACTCCTCTTTTTTCTCCTATAATTCCTCCACCCGTTTTTCCTTTCCAGTTTGATTTGGGCTTCAGAGCATCTTATCTCCTCCTGCCAGgtcttcctgtttcctgtttcctgattattattattattattaaaggaCTTCCTCCACTACCTGTGTATTTCCACACTGGAAATGTTCA
>XM_036947183.1
AGACCTAGAGTTAGCTACCTCCTGTTTCCTCATCTTTCCAAGTGTCGACTGGAGGATATTCAGAATGAAAAGATGAGATGGAGACTTCCTCTGAAGGACTATCCCTGGCAGGGCCATGCTGAGTGACATTGGGGACTATATAGGTTCAGACATACAAATTTCCTGGTTGCCTAATCTGGATGAGTTAATGAAGGGCTATGCGCGAAATTTTCGCCCTGGGATAGGAGGCCCACCTGTGAATGTTGCCATGGCTATTGAAGTAGCCAGTATTGACCACATCTCTGAAGCCAACATGGAGTACACCATGACAATTTTCCTGCGTCAGAGCTGGCGGGACGACCGCCTGTCCTACAACCACACCAACAAGACCCTGGGGCTGGATAGCCGCTTCGTGGATAAACTCTGGCTGCCCGACACATTCATTGTCAACGCCAAGTCCGCCTGGTTCCATGACGTCACCGTGGAGAACAAGCTGATTCGCCTGCAGCCTGATGGGGTCATCCTTTACAGCAGCCGGATCACCTCGACTGTGGCGTGTGACATGGACCTGACCAAATACCCCATGGATGAGCAGGAGTGTATGCTGGACCTAGAAAGCTATGGCTACTCCTCAGAGGACATTGTGTACCACTGGTCTGAGAGTCAGATACACATCCATGGACTGGACAAACTGGAGCTGTCCCAGTTCACCATCATCGACTACAAATTTGTCACGGAGACGCTGAACTTCAAATCCGCCGGACGTTTCCCGCGGCTCAGCCTTCGCTTCCAGCTGAGACGTAACCGAGGCGTCTACATCATTCAGTCCTACATGCCCTCCATCCTATTGGTTGCCATGTCCTGGGTGTCCTTCTGGATCAGCCAAACAGCAGTCCCGGCTCGGGTATCCCTGGGGATCACCACTGTGCTCACCATGACGACTCTGATGGTGAGCGCCCGCTCATCTCTCCCTCGAGCCTCGGCCATCAAAGCGCTGGATGTCTACTTCTGGATCTGCTATGTGTTTGTGTTCGCCGCGCTCATAGAGTATGCCTTCGCTCACTACAACGCCGACTACAGGCTCAAAGAGAAGGCCAAGAGCAAGGCCAACAAGATGAGCTCCGAGtCAGTCGTAAAGAATGGGAAACAGGCCATGGTGCTCTTCTCCCTGTCCGTGGCTGGAATGAACCAGGGCCTGATGGTGTCCAGCCGCCGTCCGCAGCGCTCCGGCGCCGAGACCGCAGAGGAGGAGGACGTGGAGCCCAGGAGGGTGCGGGGGACCACAGcgtcagaggagagagaagaggataagaAGTGCTGTAGTTGTTGTTCCAAGTGCTGTTGTGCTTGCAAGCCCCTCCAAGCTGACACCATAGATGTCTACGCCAGGGCTGTGTTCCCCGCCACCTTCGCCATCGTCAATGTGATCTACTGGGTGGCGTACACCATGTGAGTTGGGAGGACTAAGGATGGACAGGCTGGCACCACCAAGGACGGGAGTACTGTACATAGAGGAAAATCATGCCGCTTTGAATCCTGGGACTTATATAGGGGCACCGATGTAAACAAGGCTTCCTTAAGAAGAACTGGATTTACGTATAATATGGTGAAGTAGGGACCTGGTAAATAGCAGATAAAGTACAGTGAATGGACGAACAAAATCAGATCAGGTATATGGATATGTTCTGAAGTACAAGTTATGTACAAGGGAGCCTTGAGGGGTAGTCGATGTCTTATCCTCAGTGAGGCTCACTGTATGATAGCCCAGCTGCTGACTTTTATCTCCAAAAACCTTCACTAGCCACCCAAACTCTACTGCTGCAATCCCCTTAGATACTGATTGCTGCCCACTAAGCCATAGCAATAGACTGACGTTCAGCTATGTCCTTTTACTGTACATGTATGAACTCTGCTCACACCAGCAACATACACAGCACACTAATGTGTCATTGCTGAAAACTAATGTGCACAACAATTGTTGTTCGCTTAACTCACAAACACATCTCATGTGATGGACTAACTgttgaaaacaaaaacatgtcCAGACTTCATGATGATAAGATGCGGTGTAGTCTATTTGGCTGCAGGGCTTATTCTCCCCACCGCCCCTCTTCCCCTCTACCATCCCACTGCCTTCCCCCACTCCTCTTTTTTCTCCTATAATTCCTCCACCCGTTTTTCCTTTCCAGTTTGATTTGGGCTTCAGAGCATCTTATCTCCTCCTGCCAGgtcttcctgtttcctgtttcctgattattattattattattaaaggaCTTCCTCCACTACCTGTGTATTTCCACACTGGAAATGTTCA

Function

NR:

description
gamma-aminobutyric acid receptor subunit delta-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05184 GABRD; gamma-aminobutyric acid receptor subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566323.2 False 2567 mRNA 0.51 9 51721970 51735560
XM_036947183.1 True 2296 mRNA 0.50 9 51721970 51738292

Neighbor

gene id symbol gene type direction distance location
LOC110491091 LOC106566924 coding downstream 4013 51690883 ~ 51717957 (-)
LOC110492220 LOC106566883 coding downstream 118000 51522349 ~ 51603970 (-)
dffb LOC106566885 coding downstream 604120 51113403 ~ 51117850 (-)
LOC110492214 LOC106566770 coding downstream 618037 51101783 ~ 51103933 (-)
LOC110491090 fam57b coding downstream 644611 51076778 ~ 51077359 (-)
LOC110492226 LOC106572002 coding upstream 242322 51978399 ~ 51990025 (-)
LOC110492229 LOC106566874 coding upstream 260266 51998558 ~ 52069366 (-)
LOC110492230 NA coding upstream 335448 52073740 ~ 52077554 (-)
LOC110492234 LOC106566870 coding upstream 430523 52168815 ~ 52206285 (-)
plekhm2 LOC106566865 coding upstream 503306 52241598 ~ 52267535 (-)
G1386681 NA non-coding downstream 24504 51697205 ~ 51697466 (-)
G1386674 NA non-coding downstream 32229 51689406 ~ 51689741 (-)
G1386669 NA non-coding downstream 37185 51684569 ~ 51684785 (-)
G1386668 NA non-coding downstream 38047 51683717 ~ 51683923 (-)
G1386667 NA non-coding downstream 38404 51683363 ~ 51683566 (-)
G1386716 gnb2 non-coding upstream 111523 51849815 ~ 51852787 (-)
G1386713 NA non-coding upstream 122037 51860329 ~ 51862186 (-)
G1386781 NA non-coding upstream 132399 51870691 ~ 51871007 (-)
G1386782 NA non-coding upstream 133598 51871890 ~ 51872097 (-)
G1386784 NA non-coding upstream 135669 51873961 ~ 51874371 (-)
G1385888 NA other downstream 593322 51090645 ~ 51128648 (-)
G1385645 NA other downstream 665909 51055631 ~ 51056061 (-)
G1384875 NA other downstream 1656153 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 2002431 49576512 ~ 49719539 (-)
spen LOC106566857 other upstream 680584 52379551 ~ 52428869 (-)
LOC110492250 LOC106566852 other upstream 833418 52566433 ~ 52577143 (-)
G1388236 NA other upstream 1293640 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 1992045 53730164 ~ 53757019 (-)

Expression


Co-expression Network