LOC110492226 (LOC106572002)


Basic Information

Item Value
gene id LOC110492226
gene name LOC106572002
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51978399 ~ 51990025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566355.2
CATTTGGCAGACCGCGGAATAGCGCTGCGGCGGAAGGTTGTATAGAAAGCTGCAACGTTTGATGCAGCCTGGAGCTGGCGGCGGGTGACCAAGGATTCCAGCCTTAACACCGTTATCCTCCGTTATCCTCCGTTATCCTCAATTTAAAATTAATTTGTCAAATAAAAGGATGCATTGGATGGCCATTGATATCCATACGGATAGATGGTGGTGAAATTGACTAGTCTGTCTTTGTTTAGGGATTTTTTATGGAAGGTGATATCGCAACGATGGTGTGTCAGACGTTCAGAAGTTTACAAAGAGGCGACTTCAGTACTCTTCTGCTGGCTGTGGCGGTGCTTGGGATTCTGTTTGAAGGGATGCAAGAAACCACGGCATTTCCCACCTGGAGAATAGAGGAAGAAGTTCACACCTCTGGTGTGTTAATGATTGGGATTCGCAAAGATGCCCGCACGCAGGTCCTCCACCTCTCCAGGAACAAGCGCTATACCCTCACCCCTGAGAAACTCAAATGGGACAAGTTCAAGCTCACTTACAAGCTGCTCTCTTTCCCAAGGAACCTGATGAATGCCAGTGACACGCGCCGTGGCATTGCCAAAGCCTTCACTATGTGGAGTGATGTCTCGCCCTTCAGCTTTAGAGAGGTGCCCGCTGACCAGGAGGCAGACATCAAGATAGGCTTCTACCCCATCAACCACACAGACTGTCTGCAGTCCTACTTGCACCACTGTTTCGACGGCATCACCGGCGAACTGGCACATGCTTTCTTCCCTCCGACGGGCGAGATCCACTTTGACGACCATGAGTATTGGATTCTGGGAAACATGCGCTTCAGCTGGAAAAAAGGGGTGTGGCTGACAGACTTGGTCCATGTAGCGGCTCACGAGATTGGTCACGTCCTGGGCCTCATGCACTCCCTGAACCCCAAGGCCATCATGCACCTGAACGCAACTCTAACGGGGCGCAAGCTCATCACACAGGACGAGGTGTGGGGCCTGCACCGACTCTATGGATGTTTGGATAGATTATTTATCTGTCCAGCCTGGGCGCGGAAAGGCTATTGCGACAGCAAGCGCAAGCTCATGCAGAAGCACTGCCCCTCGAGCTGTGATTTCTGTTACGAGTTCCCCTTCCCCactgtggcccccacccccaccccccaacgGACCAAACACAAGCTGGTGGCTGAGGGGAAGAAGCTCACCTTCCGATGTGGGAAGAAAATTGCAGCAAAGGCAGGCAAAGTACACTGGTACAAGGACGGAGAGATTCTGGAGTACTCCCACCCTGGCTACATCTCCCTAAAAGACGACCACATCAGTATCGTGGCCAACGCCATCAACGAGGGCACATACACCTGCATCGTGAGGAAAAAGAACAAGGTCCTCACCAACTACTCCTGGAGGGTACGAGTGCGCTTCTGAGGGTGATGCCCCCATCCGCACATAGAAGCACTGGGTATTAGCACAGAGAACACACAACCATAGAAACAGAATTACCAGAAGAGGAAAAGCCCTTagacaactgcattttcacacattgacttgaatgggatgtCCGTTCTAGGAATTATATTTCAAAGCACACCTTCACTCAAACATTGCTTGTTCAAAACGGGGACCTCACTCACTTGGGCACATATTTTAATGTATGTACATTGTCTAAACAATACCCTCAAAACAATCATGTTTTAGGTCTGTTTTTTTGTAATGCATTTTCATATGTGCACAATAAACCCTTTTGTTCTATGGTAAGTAGTATATAGAATCTAGATGTAAAACTACATTGTGTCCAAGTGAGTATTCGATACACTGCTGGCATTGTTTGTTATGTATTATGTGAACAATAGACTGTTCATTGAAGTTAGAGCTCACTGACACTTACAGGGTAGCTAGTAGCCTCAAACTTCTCTAAATATTGTCCAGGAATTTCAAATAAATGTAACTAGCCTGGTTACTTTATGCCATGGGTAATGCATTCTAAAAGCTACTGCATCAATGCATGACACCTACAGTATAAACAAcatgttggttccatgtttcatgagctgaaataaaagatcacagaaaagtt
>XM_021566356.2
CATTTGGCAGACCGCGGAATAGCGCTGCGGCGGAAGGTTGTATAGAAAGCTGCAACGTTTGATGCAGCCTGGAGCTGGCGGCGGGTGACCAAGGATTCCAGCCTTAACACCGTTATCCTCCGTTATCCTCCGTTATCCTCAATTTAAAATTAATTTGTCAAATAAAAGGATGCATTGGATGGCCATTGATATCCATACGGATAGATGGTGGTGAAATTGACTAGTCTGTCTTTGTTTAGGGATTTTTTATGGAAGGTGATATCGCAACGATGGTGTGTCAGACGTTCAGAAGTTTACAAAGAGGCGACTTCAGTACTCTTCTGCTGGCTGTGGCGGTGCTTGGGATTCTGTTTGAAGGGATGCAAGAAACCACGGCATTTCCCACCTGGAGAATAGAGAAGTTCACACCTCTGGTGTGTTAATGATTGGGATTCGCAAAGATGCCCGCACGCAGGTCCTCCACCTCTCCAGGAACAAGCGCTATACCCTCACCCCTGAGAAACTCAAATGGGACAAGTTCAAGCTCACTTACAAGCTGCTCTCTTTCCCAAGGAACCTGATGAATGCCAGTGACACGCGCCGTGGCATTGCCAAAGCCTTCACTATGTGGAGTGATGTCTCGCCCTTCAGCTTTAGAGAGGTGCCCGCTGACCAGGAGGCAGACATCAAGATAGGCTTCTACCCCATCAACCACACAGACTGTCTGCAGTCCTACTTGCACCACTGTTTCGACGGCATCACCGGCGAACTGGCACATGCTTTCTTCCCTCCGACGGGCGAGATCCACTTTGACGACCATGAGTATTGGATTCTGGGAAACATGCGCTTCAGCTGGAAAAAAGGGGTGTGGCTGACAGACTTGGTCCATGTAGCGGCTCACGAGATTGGTCACGTCCTGGGCCTCATGCACTCCCTGAACCCCAAGGCCATCATGCACCTGAACGCAACTCTAACGGGGCGCAAGCTCATCACACAGGACGAGGTGTGGGGCCTGCACCGACTCTATGGATGTTTGGATAGATTATTTATCTGTCCAGCCTGGGCGCGGAAAGGCTATTGCGACAGCAAGCGCAAGCTCATGCAGAAGCACTGCCCCTCGAGCTGTGATTTCTGTTACGAGTTCCCCTTCCCCactgtggcccccacccccaccccccaacgGACCAAACACAAGCTGGTGGCTGAGGGGAAGAAGCTCACCTTCCGATGTGGGAAGAAAATTGCAGCAAAGGCAGGCAAAGTACACTGGTACAAGGACGGAGAGATTCTGGAGTACTCCCACCCTGGCTACATCTCCCTAAAAGACGACCACATCAGTATCGTGGCCAACGCCATCAACGAGGGCACATACACCTGCATCGTGAGGAAAAAGAACAAGGTCCTCACCAACTACTCCTGGAGGGTACGAGTGCGCTTCTGAGGGTGATGCCCCCATCCGCACATAGAAGCACTGGGTATTAGCACAGAGAACACACAACCATAGAAACAGAATTACCAGAAGAGGAAAAGCCCTTagacaactgcattttcacacattgacttgaatgggatgtCCGTTCTAGGAATTATATTTCAAAGCACACCTTCACTCAAACATTGCTTGTTCAAAACGGGGACCTCACTCACTTGGGCACATATTTTAATGTATGTACATTGTCTAAACAATACCCTCAAAACAATCATGTTTTAGGTCTGTTTTTTTGTAATGCATTTTCATATGTGCACAATAAACCCTTTTGTTCTATGGTAAGTAGTATATAGAATCTAGATGTAAAACTACATTGTGTCCAAGTGAGTATTCGATACACTGCTGGCATTGTTTGTTATGTATTATGTGAACAATAGACTGTTCATTGAAGTTAGAGCTCACTGACACTTACAGGGTAGCTAGTAGCCTCAAACTTCTCTAAATATTGTCCAGGAATTTCAAATAAATGTAACTAGCCTGGTTACTTTATGCCATGGGTAATGCATTCTAAAAGCTACTGCATCAATGCATGACACCTACAGTATAAACAAcatgttggttccatgtttcatgagctgaaataaaagatcacagaaaagtt
>TU1583818
accccccaacgGACCAAACACAAGCTGGTGGCTGAGGGGAAGAAGCTCACCTTCCGATGTGGGAAGAAAATTGCAGCAAAGGCAGGCAAAGTACACTGGTACAAGGACGGAGAGATTCTGGAGTACTCCCACCCTGGCTACATCTCCCTAAAAGACGACCACATCAGTATCGTGGCCAACGCCATCAACGAGGGCACATACACCTGCATCGTGAGGAAAAAGAACAAGGTCCTCACCAACTACTCCTGGAGGGGTGTCCTGTCCTCCATGTGCAGCTCAGAACTTGAGGCTGAACCCTGGGCCCACAGCAGAAGCCCCTTGGTTGCTGGTGGTCAGATGGAAGCCGGTGTCTTTCAGGTCATCG
>TU1583816
accccccaacgGACCAAACACAAGCTGGTGGCTGAGGGGAAGAAGCTCACCTTCCGATGTGGGAAGAAAATTGCAGCAAAGGCAGGCAAAGTACACTGGTACAAGGACGGAGAGATTCTGGAGTACTCCCACCCTGGCTACATCTCCCTAAAAGACGACCACATCAGTATCGTGGCCAACGCCATCAACGAGGGCACATACACCTGCATCGTGAGGAAAAAGAACAAGGTCCTCACCAACTACTCCTGGAGGGTACGAGTGCGCTTCTGAGGGTGATGCCCCCATCCGCACATAGAAGCACTGGGTATTAGCACAGAGAACACACAACCATAGAAACAGAATTACCAGAAGAGGAAAAGCCCTTagacaactgcattttcacacattgacttgaatgggatgtCCGTTCTAGGAATTATATTTCAAAGCACACCTTCACTCAAACATTGCTTGTTCAAAACGGGGACCTCACTCACTTGGGCACATATTTTAATGTATGTACATTGTCTAAACAATACCCTCAAAACAATCATGTTTTAGGTCTGTTTTTTTGTAATGCATTTTCATATGTGCACAATAAACCCTTTTGTTCTATGGTAAGTAGTATATAGAATCTAGATGTAAAACTACATTGTGTCCAAGTGAGTATTCGATACACTGCTGGCATTGTTTGTTATGTATTATGTGAACAATAGACTGTTCATTGAAGTTAGAGCTCACTGACACTTACAGGGTAGCTAGTAGCCTCAAACTTCTCTAAATATTGTCCAGGAATTTCAAATAAATGTAACTAGCCTGGTTACTTTATGCCATGGGTAATGCATTCTAAAAGCTACTGCATCAATGCATGACACCTACAGTATAAACAAcatgttggttccatgtttcatgagctgaaataaaagatcac
>TU1583828
CGGAAGGTTGTATAGAAAGCTGCAACGTTTGATGCAGCCTGGAGCTGGCGGCGGGTGACCAAGGATTCCAGCCTTAACACCGTTATCCTCCGTTATCCTCCGTTATCCTCAATTTAAAATTAATTTGTCAAATAAAAGGATGCATTGGATGGCCATTGATATCCATACGGATAGATGGTGGTGAAATTGACTAGTCTGTCTTTGTTTAGGGATTTTTTATGGAAGGTGATATCGCAACGATGGTGTGTCAGACGTTCAGAAGTTTACAAAGAGGCGACTTCAGTACTCTTCTGCTGGCTGTGGCGGTGCTTGGGATTCTGTTTGAAGGGATGCAAGAAACCACGGCATTTCCCACCTGGAGAATAGAGAAGTTCACACCTCTGGTGTGTTAATGATTGGGATTCGCAAAGATGCCCGCACGCAGGTCCTCCACCTCTCCAGGAACAAGCGCTATACCCTCACCCCTGAGAAACTCAAATGGGACAAGTTCAAGCTCACTTACAAGTTTGGAGATTCTTTTATTTCACCCTCCTTTCTTAGCAAACAGTTACTGTCTAAAAACAAAAGGAAATGCTGTTTGAATTGACTTCAGACATATTTACGAGGGACAGCTGTCTTAGAGCTTTATGTTAGCTCCAATTGCTTTTACTGATTTCTGCTGTTGTAATATGCCAAGTGGTTTCCCCAGATAAAGGCATTGTGTCTGTGCAGGCTGCTCTCTTTCCCAAGGAACCTGATGAATGCCAGTGACACGCGCCGTGGCATTGCCAAAGCCTTCACTATGTGGAGTGATGTCTCGCCCTTCAGCTTTAGAGAGGTGCCCGCTGACCAGGAGGCAGACATCAAGATAGGCTTCTACCCCATCAACCACACAGACTGTCTGCAGTCCTACTTGCACCACTGTTTCGACGGCATCACCGGCGAACTGGCACATGCTTTCTTCCCTCCGACGGGCGAGATCCACTTTGACGACCATGAGTATTGGATTCTGGGAAACATGCGCTTCAGCTGGAAAAAAGGGGTGTGGCTGACAGACTTGGTCCATGTAGCGGCTCACGAGATTGGTCACGTCCTGGGCCTCATGCACTCCCTGAACCCCAAGGCCATCATGCACCTGAACGCAACTCTAACGGGGCGCAAGCTCATCACACAGGACGAGGTGTGGGGCCTGCACCGACTCTATGG

Function

NR:

description
matrix metalloproteinase-23-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566355.2 False 2073 mRNA 0.48 8 51980614 51990025
XM_021566356.2 False 2069 mRNA 0.48 8 51980614 51990025
TU1583818 False 364 lncRNA 0.55 3 51978399 51981623
TU1583816 False 910 lncRNA 0.42 2 51980623 51981623
TU1583828 True 1185 TUCP 0.49 4 51983134 51989995

Neighbor

gene id symbol gene type direction distance location
LOC110492221 LOC106566882 coding downstream 242322 51721970 ~ 51738292 (-)
LOC110491091 LOC106566924 coding downstream 262657 51690883 ~ 51717957 (-)
LOC110492220 LOC106566883 coding downstream 376644 51522349 ~ 51603970 (-)
dffb LOC106566885 coding downstream 862764 51113403 ~ 51117850 (-)
LOC110492214 LOC106566770 coding downstream 876681 51101783 ~ 51103933 (-)
LOC110492229 LOC106566874 coding upstream 8533 51998558 ~ 52069366 (-)
LOC110492230 NA coding upstream 83715 52073740 ~ 52077554 (-)
LOC110492234 LOC106566870 coding upstream 178790 52168815 ~ 52206285 (-)
plekhm2 LOC106566865 coding upstream 251573 52241598 ~ 52267535 (-)
ddost LOC106566864 coding upstream 277710 52267735 ~ 52273001 (-)
G1386842 NA non-coding downstream 10140 51968579 ~ 51970474 (-)
G1386806 NA non-coding downstream 57917 51922431 ~ 51922697 (-)
G1386804 NA non-coding downstream 62453 51917949 ~ 51918161 (-)
G1386762 NA non-coding downstream 64715 51913152 ~ 51915899 (-)
G1386784 NA non-coding downstream 106243 51873961 ~ 51874371 (-)
G1386852 NA non-coding upstream 5066 51995091 ~ 51995398 (-)
G1386877 NA non-coding upstream 80855 52070880 ~ 52071190 (-)
G1386881 NA non-coding upstream 89891 52079916 ~ 52080116 (-)
G1386882 NA non-coding upstream 90112 52080137 ~ 52080369 (-)
G1385888 NA other downstream 851966 51090645 ~ 51128648 (-)
G1385645 NA other downstream 924553 51055631 ~ 51056061 (-)
G1384875 NA other downstream 1914797 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 2261075 49576512 ~ 49719539 (-)
spen LOC106566857 other upstream 428851 52379551 ~ 52428869 (-)
LOC110492250 LOC106566852 other upstream 581685 52566433 ~ 52577143 (-)
G1388236 NA other upstream 1041907 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 1740312 53730164 ~ 53757019 (-)
G1389763 NA other upstream 2554703 54544728 ~ 54545243 (-)
LOC110492226 LOC106572002 other upstream 1511 51978399 ~ 51990025 (-)

Expression


Co-expression Network