LOC110492247 (LOC106566856)


Basic Information

Item Value
gene id LOC110492247
gene name LOC106566856
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52489746 ~ 52503677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566394.2
TGACGTCATGCTTGGGGCGGGACAGCGACAAGATACATAAACTGGAACAGGCACCGCGCTGTATCGGTTAGAATATTCAACCTGAAAATATAAGCATGTCGGTCGTGTGCACCTCTTTAGCCCGAAACGCCGTGGCATTACGGAACACCGGGGCGATGGTGATGGTGCGCTATGCACAGACCGCAGCCGCCCCGGCATCTGAGCCCAGGATCAAGAAGTTCCAGATCTACCGCTGGGACCCAGACACAATGGGGGATAAGCCACGCATGCAGACATATGAAATTGACCTTAACAACTGTGGCCCCATGGTTTTGGATGCCCTCATTAAAATCAAGAATGAGATGGACCCCACGCTCACATTCAGACGCTCCTGCAGAGAGGGTATCTGCGGCTCATGTGCCATGAACATCAACGGAGGCAACACACTGGCCTGCTTAAACAAAATAGACATCAATACCAGCAAACCGATCAAAATTTACCCACTCCCACATATGTACGTTGTCAAAGATCTGGTGCCGGACATGAGTAATTTCTATGCCCAGTACAAGTCCATCGAGCCCTTCCTGAAGAAGAAAGATGAGTCTCAGGAGGGCAAGGAGCAGTACCACCAGACTGTGGAAGACAGGCAAAAGCTGgatGGTCTGTATGAGTGCATTCTCTGTGCCTGCTGTAGCACCAGCTGCCCTAGTTACTGGTGGAATGGAGATAAGTATCTGGGCCCTGCTGTCCTCATGCAGGCCTATCGTTGGATGATTGATTCACGTGATGAGTTCACAGAGGAACGACTGTCGAAGCTCCAggaccccttctctctctaccgctgTCACACAATCATGAACTGCACTAAGACATGCCCCAAGGGACTCAACCCAGGAAAGGCTATTGCTGAGATCAAGAAAATGATGGCAACATATAAAGAGAAAGTCATTAACCCTGTGAACATTGTGGATAACCACCGGACTTGAAATCCACTAGTAATGACTCTAATGCTGAACTTTCGATTAAACATTAGCCTTTCAACAGTGTCTGTCCCTTTCATTAGGCTTCGCACATGAAAAAAGATACAGGCAGCCTAGAAGATACTGCTGATTTTATATATGTGAGAGTGGAATAACTGCTCCTCCTtctagaaatgtttttttttccttctAAAAATACATACAAAAGTAATGTTTGATGTGGTGATAGAGCTTattactcagtgtgtgtgtgtagattgtacAGCAGAGGTTGGCACCAGGTACTGGCCTACAAGTATTTAAGATTTTGGGGGGATTTTAGTTTTGGGAGAAAAAAATTCTAAAACCACCAGGAATTCAGCAAAAAATGTGTTTCgtttaggaaatctgttcaagTATTCCCATTAATAAAAAAAGATGTGATCGTGTTTCAATGTAATCAGGGTCTGAAATTATTGCTATTTCAAATTCAATCTCTTTTggggcttagttgtggtcaatttgcagtgtgtAAATTATTTTGAATTATGTTCCGGCACCCCCGACTATCCACTCCTACAAAAATCAGCCAACAGCTGATTCTAGTTGCCTACCCATGTTGTGCAGCCTTATAACCACATTATGGGATGATGAGCTCTGGACCACAATTTGATGTTTGTTCattggatatactgtatctatacatAATATTTTAAGGAAAACCAGTTAAATGTTATTTAAATGCTTATCAATAAAGGAAGTAGAATTAAAA
>XM_036947206.1
gaaggaggagagatgactagaaacgattcggttggccgttttatgtgtggattaattgtcggagtagaggtccttgtgcatttcagATGGTGCGCTATGCACAGACCGCAGCCGCCCCGGCATCTGAGCCCAGGATCAAGAAGTTCCAGATCTACCGCTGGGACCCAGACACAATGGGGGATAAGCCACGCATGCAGACATATGAAATTGACCTTAACAACTGTGGCCCCATGGTTTTGGATGCCCTCATTAAAATCAAGAATGAGATGGACCCCACGCTCACATTCAGACGCTCCTGCAGAGAGGGTATCTGCGGCTCATGTGCCATGAACATCAACGGAGGCAACACACTGGCCTGCTTAAACAAAATAGACATCAATACCAGCAAACCGATCAAAATTTACCCACTCCCACATATGTACGTTGTCAAAGATCTGGTGCCGGACATGAGTAATTTCTATGCCCAGTACAAGTCCATCGAGCCCTTCCTGAAGAAGAAAGATGAGTCTCAGGAGGGCAAGGAGCAGTACCACCAGACTGTGGAAGACAGGCAAAAGCTGgatGGTCTGTATGAGTGCATTCTCTGTGCCTGCTGTAGCACCAGCTGCCCTAGTTACTGGTGGAATGGAGATAAGTATCTGGGCCCTGCTGTCCTCATGCAGGCCTATCGTTGGATGATTGATTCACGTGATGAGTTCACAGAGGAACGACTGTCGAAGCTCCAggaccccttctctctctaccgctgTCACACAATCATGAACTGCACTAAGACATGCCCCAAGGGACTCAACCCAGGAAAGGCTATTGCTGAGATCAAGAAAATGATGGCAACATATAAAGAGAAAGTCATTAACCCTGTGAACATTGTGGATAACCACCGGACTTGAAATCCACTAGTAATGACTCTAATGCTGAACTTTCGATTAAACATTAGCCTTTCAACAGTGTCTGTCCCTTTCATTAGGCTTCGCACATGAAAAAAGATACAGGCAGCCTAGAAGATACTGCTGATTTTATATATGTGAGAGTGGAATAACTGCTCCTCCTtctagaaatgtttttttttccttctAAAAATACATACAAAAGTAATGTTTGATGTGGTGATAGAGCTTattactcagtgtgtgtgtgtagattgtacAGCAGAGGTTGGCACCAGGTACTGGCCTACAAGTATTTAAGATTTTGGGGGGATTTTAGTTTTGGGAGAAAAAAATTCTAAAACCACCAGGAATTCAGCAAAAAATGTGTTTCgtttaggaaatctgttcaagTATTCCCATTAATAAAAAAAGATGTGATCGTGTTTCAATGTAATCAGGGTCTGAAATTATTGCTATTTCAAATTCAATCTCTTTTggggcttagttgtggtcaatttgcagtgtgtAAATTATTTTGAATTATGTTCCGGCACCCCCGACTATCCACTCCTACAAAAATCAGCCAACAGCTGATTCTAGTTGCCTACCCATGTTGTGCAGCCTTATAACCACATTATGGGATGATGAGCTCTGGACCACAATTTGATGTTTGTTCattggatatactgtatctatacatAATATTTTAAGGAAAACCAGTTAAATGTTATTTAAATGCTTATCAATAAAGGAAGTAGAATTAAAA

Function

NR:

description
succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566394.2 False 1710 mRNA 0.44 8 52489746 52493952
XM_036947206.1 True 1635 mRNA 0.43 8 52489746 52503677

Neighbor

gene id symbol gene type direction distance location
atp13a2 atp13a2 coding downstream 481 52452964 ~ 52489265 (-)
tmem82 LOC106566858 coding downstream 49295 52436999 ~ 52440451 (-)
spen LOC106566857 coding downstream 60877 52379551 ~ 52428869 (-)
LOC110492242 LOC106566859 coding downstream 125264 52332426 ~ 52364482 (-)
fam131c fam131c coding downstream 167209 52311057 ~ 52322537 (-)
tmem240a LOC106566854 coding upstream 10606 52514283 ~ 52532225 (-)
LOC110492250 LOC106566852 coding upstream 62756 52566433 ~ 52577143 (-)
LOC110491093 LOC106572282 coding upstream 102757 52606434 ~ 52618106 (-)
rassf11 LOC106566932 coding upstream 183882 52687559 ~ 52692433 (-)
LOC118939555 NA coding upstream 274818 52778495 ~ 52780254 (-)
G1386889 NA non-coding downstream 399914 52089251 ~ 52089832 (-)
G1386888 NA non-coding downstream 403710 52085821 ~ 52086036 (-)
G1386887 NA non-coding downstream 404431 52085109 ~ 52085315 (-)
G1386882 NA non-coding downstream 409377 52080137 ~ 52080369 (-)
G1386881 NA non-coding downstream 409630 52079916 ~ 52080116 (-)
G1388023 NA non-coding upstream 89891 52593568 ~ 52593778 (-)
G1388025 LOC106600668 non-coding upstream 94483 52598160 ~ 52598398 (-)
G1388036 NA non-coding upstream 108124 52611801 ~ 52612137 (-)
G1388044 NA non-coding upstream 136998 52640675 ~ 52640919 (-)
LOC110492226 LOC106572002 other downstream 499751 51978399 ~ 51990025 (-)
G1385888 NA other downstream 1361098 51090645 ~ 51128648 (-)
dffb LOC106566885 other downstream 1374681 51113403 ~ 51117850 (-)
G1385645 NA other downstream 1433685 51055631 ~ 51056061 (-)
G1388236 NA other upstream 528255 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 1226660 53730164 ~ 53757019 (-)
G1389763 NA other upstream 2041051 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 2481141 54984818 ~ 54986263 (-)

Expression


Co-expression Network