tmem240a (LOC106566854)


Basic Information

Item Value
gene id tmem240a
gene name LOC106566854
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52514283 ~ 52532225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566395.2
ccagGGACATCCCCATGAGGCGACCGGATCACCCTTTCTCCTGTTTGCTGAGATTTTTTGAATGAGAACGGTACCTGGCCTTACGGGAAAAGAACATCATTGCATTTGTAGTCAGGCTAGGACACCCTCTCCACCAGCACCCTATTTTCGCCGTTCCCGCCACAGCAACCGCGGCACCGACCAGTCCACGACCCGGCCCGCGTCATCGAATCGACGCATCACTGGATGGGGTGTAGACTGTGAAGACCGTGAGTGCGTGTGTCAAAGGGGGTACTTGAGGGAGACTGGGCGATCTCATCCCCTGTGCACTGGTTAATTGCACTCCAACCTGGCGAGTTTGGAGGGACGGAGAGTCAGGTGCAGTAAGGGCGCCTCAATGACCGTCTCCTCCCCGGACAGAGCGCCTAAAGCCCAGCGTTTGCAGTGCGGCGGGTAGAGAAGGCTAGAGAACAGCGGCGAGTTTGGAAGTTTTGATGCATATGATCACAACCACCATGATTTTTATGATTCTTGGCGCTTCAGTTGTAATGGCGATAGCCTGTTTAATGGACATGAACGCACTACTGGATCGCTTTCACAACTACATCTTACCGCATTTACGAGGGGAAGACCGCGTCTGTCATTGCAACTGTGGAAGGCATCATGTCCACTACGTGATCCCGTACAATGGGGACCATTCTCTGGTGGACTCGTCGGAGAACTACTTTGTGAGTGACAGCGTGACCAAGCAGGAGATGGACCTGATGCTGGGGCTGCTGCTGGGATTCTGTATCAGCTGGCTCCTGCTGTGGCTGGACGGAGTGCTGCACTGTGCTGTCAGGGCATGGAGAGCCAGTCGCTACTATGACACCCCTTCTTGGTCATGGCTCCCCTCATTCTGCAACCTTCGAGATCTACGTCGACGAGCCCAGCTCAGACAGCtggaggactccagtggcaacatGGTCCACATCAAGCAGAAGCTCTACCACAACGGCCACCCCAGCCCACGCCACCTCTGACTCTAAAACAAGAATCCCCCATCCCAGCCCCCCCAAACTGCCCCATGGCCAACTGCTGCCTCAGAGACCCTGGAAGACTGCCCTCTCACTGTTCATAACACCCCTGTCACTGAGACTTTCTTATGACAACCCTGACACAAGTCAGCACCAACCAATCCAAACTCGAGCAGCAGAAGAAGAAGATAGTCGCTACTGAAATCTTGTCTATGTCCACATTTTCTGTGTTCATTGTTGAAACTTGGCATGGGTACGATGCGGGCAGTGTCCAGAAAGTGGGGGGAGTACGAATGGGGTGCCACAGTGTGGGTTTTTCTCTATGGGGAGGGTCTTTCTCTAAAGTGGGAGGGAGGTAAATGGAAAGGGGTGTTTTTCAAGATTTTGTGATGGGAAGATTAGATTGCTGCTTCTGTAAATACTAATAAATATAGGGAAGTGGGAACACagggtatgggggggggggtttgtttgTGAGTGTGATGAGTCAAGTGTTACGAGTAGAGCTGATGGACTGTATGGGAGGATAAACGGAGGGTAGGGAAGATGAGGATGACAGCCATCTGGGGTTGAAGAGTGTGATTTCTGCTAAAAACACAGATGAATTAGCTTTGTTACTTTGTGAATTAAATGAATGTATTAATTTACATGTAAATATAAAGAAGGGGAGGGGAGCATACGTTTGTGGTCAGGGTTCTCTGCGCTGTGTTATTATTTATGAGAAGGTAGAAAATAAATTGATGCCAGCCcagagaagacggagagacagttCAGTACTTCCCTTGTCTTCCCAATACTGTGTCCAATAGCACTTCCCAATTTGCTACATCCAATTGCCTCATACTTATCAGGAGCAACCAGCCTAGCAGCAGCGGGAACCTTCACCtagtccccctcccctctctgtccagaCATTGCTGTTGTGAGGATAAAATGTCTGTTTTATTAAAAGTGCCATTGAAAAACAA

Function

NR:

description
PREDICTED: transmembrane protein 240-like isoform X1

GO: NA

KEGG:

id description
K24870 TMEM240; transmembrane protein 240

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566395.2 True 1963 mRNA 0.50 4 52514283 52532225

Neighbor

gene id symbol gene type direction distance location
LOC110492247 LOC106566856 coding downstream 10606 52489746 ~ 52503677 (-)
atp13a2 atp13a2 coding downstream 25018 52452964 ~ 52489265 (-)
tmem82 LOC106566858 coding downstream 73832 52436999 ~ 52440451 (-)
spen LOC106566857 coding downstream 85414 52379551 ~ 52428869 (-)
LOC110492242 LOC106566859 coding downstream 149801 52332426 ~ 52364482 (-)
LOC110492250 LOC106566852 coding upstream 34208 52566433 ~ 52577143 (-)
LOC110491093 LOC106572282 coding upstream 74209 52606434 ~ 52618106 (-)
rassf11 LOC106566932 coding upstream 155334 52687559 ~ 52692433 (-)
LOC118939555 NA coding upstream 246270 52778495 ~ 52780254 (-)
LOC110491094 LOC106566841 coding upstream 272200 52804425 ~ 52837293 (-)
G1386889 NA non-coding downstream 424451 52089251 ~ 52089832 (-)
G1386888 NA non-coding downstream 428247 52085821 ~ 52086036 (-)
G1386887 NA non-coding downstream 428968 52085109 ~ 52085315 (-)
G1386882 NA non-coding downstream 433914 52080137 ~ 52080369 (-)
G1386881 NA non-coding downstream 434167 52079916 ~ 52080116 (-)
G1388023 NA non-coding upstream 61343 52593568 ~ 52593778 (-)
G1388025 LOC106600668 non-coding upstream 65935 52598160 ~ 52598398 (-)
G1388036 NA non-coding upstream 79576 52611801 ~ 52612137 (-)
G1388044 NA non-coding upstream 108450 52640675 ~ 52640919 (-)
LOC110492226 LOC106572002 other downstream 524288 51978399 ~ 51990025 (-)
G1385888 NA other downstream 1385635 51090645 ~ 51128648 (-)
dffb LOC106566885 other downstream 1399218 51113403 ~ 51117850 (-)
G1385645 NA other downstream 1458222 51055631 ~ 51056061 (-)
G1388236 NA other upstream 499707 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 1198112 53730164 ~ 53757019 (-)
G1389763 NA other upstream 2012503 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 2452593 54984818 ~ 54986263 (-)

Expression


Co-expression Network