LOC110492250 (LOC106566852)


Basic Information

Item Value
gene id LOC110492250
gene name LOC106566852
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52566433 ~ 52577143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566397.2
AGAGCTCTCTTGAGCTTCTTGCTATTCGAAGTCTCTTGAAAGACTGGAAATAAAGACGATTGAACACTGGAAGGGGAGGACCTGGACACGGGACTGGAGTCAGGGCGAAGAACCGGCTTGAACACTCACGCCCTAGTTCGCTCAAAGCGCCTTTTACCTCACAAACTCACGGAGGATACCCGAGCAACCAATTTTCTGGGGAAAATATTACGAGAATAAAATGTTCCAGAAAAACAGAAACAAAACTGGAAAAGTCTGAGTGAAAGTGAGGATATGTGAAGTTCCAATCTTTTTATAGCCTGTTAGTAGCTCGAATGTAAGCCTGATTACCATTTCACTTGGAGCAACGGTCCAGGCAATGGACACTTTTTTGGAGGAAGCCCTTTCGATATCGTCATAATTCTTTATACTGGAATTGATCACAATTAACCCTTGCAATGAAGGTTCGGGTTGCATTTACTTGCATGCTGGTTTGCGTGTTCCTGTGGTCGTCCAGTGGTCAAAACTCCGCACCAGAAGCAgtttTGAACTGCTGTGAGGGTGACATCCTCTTCCTATTGGACTCCTCGGGCAGCGTCTCATCCTATGACTACTCCCGCATGCTGGGCTTTTTGTCCGAGCTCCTCCTTCCATTCTCATTGGGTGAGGACCAGGTGAGGGTGAGCCTTCTGCAGGTGGGCACCCAACCCCGCCTTGAGTTTGGTTTTGACAGCCACAATAGCCAAACTGGCCTACAGGGGGCGCTGGGGAACACCAAGCCTCTGAGGGGCGACACCAACACAGAGGAGGCCCTCAGGATGGCCAAGGACTGGGTGCTGAAGCCCGGGGGTGGTGCGGGGGCCAGGGAAGAACTCCCCAGAGTTCTAGTGTGGCTGACGGATGGGGTGAAGCCGGGTGATGTGATTGGACCAATGGAGAAGCTGAGAGAGGAGGGCGTGGCCGTTCTGGTGATCTCCACGGGCCACGGGAACTACCAGGTGCTGCGGCAGGTGGTCACCCCTCCTGTGGAGTCACACCTGTACTTTGTGGACATCGACGATATGAGTATCATCACTGAGGACCTGAGGGATGCCATTATTGAGATCCTCCGGGCTGAACGGCTCCAGGTGCGAGACGTGTCCACAGACAGCGCCATGCTGCAGTGGCGACCGGTTCTGGCCGGTTTGACCGGTTACTATGAGATCCGGTTTGGACCGGCTCCCAGTCTAGGAGTGAGCGAAAGAGAAGCAAGGGGGCCTGGTACCAGCCCCAGTACCAGTGGTAGTCATTACCAACGACTGACCCGGCCAGGGGACTCCAGCATGGCAAGGCTGATGGACCTGAAACCAGACACCACATACATGGCCACACTGACTCCTAAGTCCAACCTACAGGTGCTCAACCCCCTCTCTGTCACCTTCACCACTAAGCCAGAGGTGTTGAGCCCGACTGTGGTGACGGTGTCTGACTCAGGGGCCAACGGTGTGAGGGTGAGCTGGGGTCCTCTGCAGCCAGAgtctgtccagagcttccaggTGGAGTACATGGCCCTGCCGGGGGGGAAGCTCCACATGACTACTGTGGGCCAAGGGCAGAACTCCACCCTGCTGACTAACCTCCAGCCAGACACCCAGTACCTGGTCACCGTGAGCGCACGGCACTCCTCTGGCCGGGAGAGGGCCATGTCTGTCAAAGTGTGCACTGAGGAGGtGAGGCCGGCTCTAGCAGACCTGCAGCTGACCACGGTGGGCAGTGACTCTGTGCAGGTGGACTGGAAAGCCAGCGTGGACGGCCTCAGGGGCTACTGGCTCACCTGGGAGGGACAGGGCATCCACGGCTCTACCGCCGCCCCGCGCTCCTCCCTCTACTTGCCTTCCAACTCACTGTCCACACGCCTCACACACCTGCCCCCCGCCACCCGAGTGTGTGTGTCACCCGTCTACCGGACGGCACGCGGGGAGGGCCTCTGCTGTATGGCCCAGTTTCATTCAGATGCATCGGTTTGGGGCCACAGATCATAACATTGCTGAGCTCAACAGGCACTATGccaaggatggagagatgaaggagaagaagagatAGAGGAACAATGCATCTGAACTTGCATCCCTCCTTCAGTTCGTTCTCTCCTTTCTGGACAAGACACAAGGCCTTTGGCTTACAAAGCACTGTCTAATAGATACTGATACgatagatagattgatagatagattgatagatagataggCTTGCTGTACTATAAAGATCTTGCTCTATTAGTAAGCACCCTAACTGAGTTGGGTTGCTATCTCCAGCGATATATACATCTTGATTTTCACATTTACTTTACATTGCCTAAAACCTGTAATCACACTGTAAACATGTTTGTTTTAGATATAAAATGTAGAGAGTGGCTAAGCATATCAGTATAGATCAAGGTCATTCTGCTTGATGGTATTTTGCATAATGTAGTTTTAATCAACaagacccactgggcacagacatggTGATTTACTAATTTGAATTCAACAGaaaatgtcaccaagtcgttggatttaggttaaaagttgggtggaaAAAAACATGAAATTCCCTTActttgatgactttttgcaaatccaatcagttttccacgttgattcaacatcatctcATACATTTTTGatgttgttgaaatgacgtgcaaacaacattgattcaaccagttttaccCAGTGGGGaggaatgtattttttaaaaatgttctagCTTCTACAATACACAAGGAGCAACCATGTTTGCAAAATAATCTGAATATTTCCCAAAGCACCCACTCGTAATATTTTAGTAACACTCTTTCCATGTGTGTGCCAACTCACTTTAATTGAAGGGCAAATGGACACAGAATCCTTAATAACAGAGGAACCCATCTAAACCAATGAAAAATCTGATTCTCTACATGGCTGCACTGATAAAACCACAGACGAGATGTTCTACCAGTGAGATGTTGCAGATGATTTTTCGATAAAGGATCAATCTGACCGTATTCATACTGTAGGTGTAATGTTTCGACATCATTTCAACATCAAAAAATCTAAGCGATGACGTtcaatcaacgtggaaaactgattggatttgcaaaaagtcatcaacgtaaggaaATTCTGTCtctttttcacccaacttttaacttAAATCCAattgacatggtgacattttatgttgatttcacattgactTCATGTTAGTTGAcgactcaaccaaatgtaaatcaaaaatagacgttgaactgacgtctgtgcagTGCGGTGGGTCTGTTATCAGCTGGTTTCTGCTGCCTCCCTGTGGAAGTTGTACTGATGCATTTTAGATCCTTTTTAGATAGTTTCAGTGTTGGTTTGTTCATATTCATTACATTGAGAGTTGTTCATCACTATATTAAATGAACTAGTTTTACAACATAGCGGATTTTCATTGAGAATGATCATGCATATCCAAAGTGATTACAGGTGTAATACAATGTATTTGTTTGGTCATTTTTATTTTCACTCCTAACTAACTGCATCACATTTTTTTGCATTAACATTAACTGCATTAACTTCCAGAACTGTCTCTTAGTGCCTAGTATTGATGGATGCTGTTGGGTTGTTGCAGTCACCTCTCACAGTGGTACATCAGTTAAAGCACAGGGACTGAATGACTGACCATTTATTGAGGATCAGGATGCTAATTAGAGGAATTAATTGAAGAAGGGTTGATATCAAAAGGGATTGTAGAAATTATGATGAATATGAAACATTCATATCTGATTTGTGAGGAAAAGCTGGAAATAGAGGTTGTCAAAGGGTGAGTCTTATTTCATGGCCTTCCCCTGTAAGACATTCTATGCATCTCTAACTCCCATTCTAATTTTCTCATCTCCTCACTCTTCTTTGCCATTTTTCctctggccttagttatctttgttttcattattattttggttaggtcagggtgggacatgggggatttatgtgttttgtccgttctaggtagttttgtatgtctatggttgcctagattggttctcaattagaggcagctgtctgtcaTTGTATCTGAttaggaaccatatttaggcagccatgttctttgggtattttgtgggtgattgtcttctgtctttgtgtcattgcaccagataggactgtttcggttttcacatttgttgttttgtattttgtagtgttctcggtTATCGTCttcattaaacatgttgaa
>TU1585247
GAGATCCTCCGGGCTGAACGGCTCCAGGTGCGAGACGTGTCCACAGACAGCGCCATGCTGCAGTGGCGACCGGTTCTGGCCGGTTTGACCGGTTACTATGAGATCCGGTTTGGACCGGCTCCCAGTCTAGGAGTGAGCGAAAGAGAAGCAAGGGGGCCTGGTACCAGCCCCAGTACCAGTGGTAGTCATTACCAACGACTGACCCGGCCAGGGGACTCCAGCATGGCAAGGCTGATGGACCTGAAACCAGACACCACATACATGGCCACACTGACTCCTAAGTCCAACCTACAGGTGCTCAACCCCCTCTCTGTCACCTTCACCACTAAGCCAGGTAAGAGGAGGTGGCACGTTTACATTGGACATTTACATTGTTACAATTAACAATGTTGACTTGGAGTGTGATGTCTTTAGGGTTGTGTCCAGCATGGGCCTCACACTGTATATCAAAAATTCTTGAAGATGGAATCCgcagtaggggaaacagcaccactgtccAATGC

Function

NR:

description
von Willebrand factor A domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566397.2 False 4197 mRNA 0.46 6 52566433 52577143
TU1585247 True 503 TUCP 0.54 2 52571710 52572307

Neighbor

gene id symbol gene type direction distance location
tmem240a LOC106566854 coding downstream 34208 52514283 ~ 52532225 (-)
LOC110492247 LOC106566856 coding downstream 62756 52489746 ~ 52503677 (-)
atp13a2 atp13a2 coding downstream 77168 52452964 ~ 52489265 (-)
tmem82 LOC106566858 coding downstream 125982 52436999 ~ 52440451 (-)
spen LOC106566857 coding downstream 137564 52379551 ~ 52428869 (-)
LOC110491093 LOC106572282 coding upstream 29291 52606434 ~ 52618106 (-)
rassf11 LOC106566932 coding upstream 110416 52687559 ~ 52692433 (-)
LOC118939555 NA coding upstream 201352 52778495 ~ 52780254 (-)
LOC110491094 LOC106566841 coding upstream 227282 52804425 ~ 52837293 (-)
LOC110491095 LOC106566922 coding upstream 260585 52837728 ~ 52856339 (-)
G1386889 NA non-coding downstream 476601 52089251 ~ 52089832 (-)
G1386888 NA non-coding downstream 480397 52085821 ~ 52086036 (-)
G1386887 NA non-coding downstream 481118 52085109 ~ 52085315 (-)
G1386882 NA non-coding downstream 486064 52080137 ~ 52080369 (-)
G1386881 NA non-coding downstream 486317 52079916 ~ 52080116 (-)
G1388023 NA non-coding upstream 16425 52593568 ~ 52593778 (-)
G1388025 LOC106600668 non-coding upstream 21017 52598160 ~ 52598398 (-)
G1388036 NA non-coding upstream 34658 52611801 ~ 52612137 (-)
G1388044 NA non-coding upstream 63532 52640675 ~ 52640919 (-)
LOC110492226 LOC106572002 other downstream 576438 51978399 ~ 51990025 (-)
G1385888 NA other downstream 1437785 51090645 ~ 51128648 (-)
dffb LOC106566885 other downstream 1451368 51113403 ~ 51117850 (-)
G1385645 NA other downstream 1510372 51055631 ~ 51056061 (-)
G1388236 NA other upstream 454789 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 1153194 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1967585 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 2407675 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 3247016 55824155 ~ 55826646 (-)

Expression


Co-expression Network