LOC110491093 (LOC106572282)


Basic Information

Item Value
gene id LOC110491093
gene name LOC106572282
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52606434 ~ 52618106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945784.1
ACTTCTTATCACAACTGCAACAGGAGCCAATAAGAGGTTTTCACAGAAATTACTGATGGGCCCCTCTGTTAACCCTGTGAAGAATGTGGTGAATGGATTATCAAAACAGGACCGCAGTGGCTTCTCTTTATTCTTCTCAAGTGTCAGGAAATCTTTATCAGCACTAACTAGCACCAGAGGTCACATACATTTTGTGCTTCACAGCAATTGTTGGCATTCGCAGACTGGAAGAGGAACAGGGAAGCTCTCACATTGACCAATGTCAACCACCGCTATGGACAACTCAACCTTACCTGGCTTAGAGGCAGCAACTGCAAGTGGGGATGCTGTTAACCCTTTAGGGAGTTCCAATGGCAGCTTGTCCGAAACCAGTGCCTGGGGCATCAGTGGCAGTGGTCCGTGGCTGTTGGCGTGCATGTTATCCCTCATCATCCTGATGACGGCTTGTGGCAACACTCTGTTGATCGCTCTGGTGTTTGCCCAACGCTCCTTACGCAACACCTCCAACTGTTTCCTggtgtctctcttcctgtctgaccTGATGGTGGCTCTGGTGGTGATGCCGCCGGCAATGCTCAATGTGCTGTACGGGGCCTGGGTGTTGTGGCCGGGCTTCTGCCCCGTGTGGCTCTGCTTCGACGTCATGTGCTGTAGTGCCTCCATTCTCAACCTCTGTGTGATCAGCCTGGACCGCTACCTCCTCATCATCTCGCCGCTGCGCTACAAGCAGAGGATGACCCCTCCTCGGGCCCTGCTTCTGGTGGGAGGGGCCTGGGGTCTGGCCGCCCTCACCTCCTTCTTGCCCatcaagatgaactggcacagctTGGGTCATGGGAGTGGCCATTCCCCAATGCACGGGGCTGGCAGTTGCTGTCTGCGGGTTACCTTTCCTTTTGCCCTGGTGGCGTcagtcctcaccttcttcctaccaTCCAGTGCCATCTGCTTCACCTACTGTCAGATTCTCCTGGCGGCGCGGAGACAGGCGAGGCGGGTGGCGGCGCTAAGTCAACCTCCGTACCCGCACCATTCGCCTGAGGAGCCTTCTCACCCTCCGTCACCAGGTGGGGGCGCCGCCGGACATGCTCACCTCGAAGGAGATGACTACAGTCATCAGGAGAACCCTGTGTCACGCCATGTGCCGGTGAGAGCGTGGGGTGGTAGAGGAAATGAAGGGGGATACAATGAGGCTACATCCCAATGCTGTATAATCCGTCCCTGTATGATCAGTTTGTCGGTGAACAGCGAGCGGCGGCTGGCCCACCGGCAGGGACGGAGGGCAGTGAAGGCCAGTCTGACCCTGGGAGTCCTGCTGGGCCTCTTCTTCAGCGCCTGGCTGCCCTTCTTCATCACCAACATGGCCCAGgcGGTATGTGAGTGTGTTCCCCCGGCGCTCTTTGACGCCATCACCTGGCTGGGCTACTGTAACAGCACCATGAACCCCATCATCTACCCGCTGTTCATGCGTGACTTCAAACGGGCCCTGGGGAGGCTGCTGCCCTGCTGCTCCACCCACTCGCCCCACAGACCCTCACTggcgctctccctctccctccgcaACTCCGGCGAGCCCAACCTGCCCACGGAGCCCCCCTCCCTGGCCTCCGACCCCCCACAGCTCCCCGCCACCGCCACAGACGCCGTCAACCTGTTTGACGACGACCACGCTGGGATTGAGCTGCCCCTGCTGTTGCCCAATCAGGTGGACACGCTGGACtgaaggggaggatggagagtagAGTGTGAAGAGATGTTACATACTGTAACTTATTACCACCAAGGGGAACTTGGCTGAGGGGAAAGGTTGGAGGAAGGTGTAATGTTAAACTCATCAAAGCAGCACTTGTGGGTGGTAGCAAGATGGAAAAATAATCTAGACTGTGCAATTTAGTGAGCATACAGGGCAGGAGCGGATGAGAGAGAGCTAGGTGCTGAGATTCACTGGGTGACTGCATTAGATGACATCACTGTGATAACAATTATAAAAAATGCCAGGGACTCATTCATGCTGCTTTGTCTTCATATCCACAAAAGTGGGAGGATGGCTATAAATAGTATTGTAATTAAATGTTTTTAATTAACATCCTGCCTACATTAAAATTACATTACTTTAACACACTATACAGTGCATACATTATTCATCACTTATTAGGCTGCCATAGTTAAATACATCTAAAAGCCCTAAGGGGTTCACACGTTCATGATTAGTTCAATTAAGATGTTTTTCACTGGAAGTTGCCATTTGTGTCCACTGATGTCTTCACTGAGTGTTCTGGCACCTGAGTGTGCTGAGAAGCTAAAGGAGGTCTGTCCACAGACAACTGTGATGTTGTTGGTAATTCAAGTTGAGAAGAGGCAGAAGAACTGCAGTTGGTCCTATAACCTCCTATGTTCGCCTGTTTGGTTCCATGTGTTGATGCGTTCTCTCAAACTCGAGATGGGAAGCTGCACCGTTGTCTTTATGGGCGGCATTCCCCTCAGAACTATGTTGCAGGTTACCCTGAACACTATGTTTTCGGAGGAGGAAAAGTGGGCTTTCTGGACATATTTTCAAACCTTCGTAGATGGAAATGAAATATGTATACTGTGGACTTGATGTAATAACTGGACATTATTTGACACTTTATAGATTTCACGTTGTGTAACTGAAGTTTTGTTGTGAATAA
>TU1585283
GAGGAAAGCAGGACTATTGGGCACGACGAAGAGATAGAATCAGTGCCGACACTTCTTATCACAACTGCAACAGGAGCCAATAAGAGGTTTTCACAGAAATTACTGATGGGCCCCTCTGTTAACCCTGTGAAGAATGTGGTGAATGGATTATCAAAACAGGACCGCAGTGGCTTCTCTTTATTCTTCTCAAGTGTCAGGAAATCTTTATCAGCACTAACTAGCACCAGAGGTCACATACATTTTGTGCTTCACAGCAATTGTTGGCATTCGCAGACTGGAAGAGGAACAGGGAAGCTCTCACATTGACCAATGTCAACCACCGCTATGGACAACTCAACCTTACCTGGCTTAGAGGCAGCAACTGCAAGTGGGGATGCTGTTAACCCTTTAGGGAGTTCCAATGGCAGCTTGTCCGAAACCAGTGCCTGGGGC

Function

NR:

description
5-hydroxytryptamine receptor 6-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945784.1 False 2669 mRNA 0.52 4 52606434 52618056
TU1585283 True 432 lncRNA 0.47 1 52617675 52618106

Neighbor

gene id symbol gene type direction distance location
LOC110492250 LOC106566852 coding downstream 29291 52566433 ~ 52577143 (-)
tmem240a LOC106566854 coding downstream 74209 52514283 ~ 52532225 (-)
LOC110492247 LOC106566856 coding downstream 102757 52489746 ~ 52503677 (-)
atp13a2 atp13a2 coding downstream 117169 52452964 ~ 52489265 (-)
tmem82 LOC106566858 coding downstream 165983 52436999 ~ 52440451 (-)
rassf11 LOC106566932 coding upstream 69503 52687559 ~ 52692433 (-)
LOC118939555 NA coding upstream 160439 52778495 ~ 52780254 (-)
LOC110491094 LOC106566841 coding upstream 186369 52804425 ~ 52837293 (-)
LOC110491095 LOC106566922 coding upstream 219672 52837728 ~ 52856339 (-)
LOC110492261 LOC106566840 coding upstream 247112 52865168 ~ 52874886 (-)
G1388025 LOC106600668 non-coding downstream 8036 52598160 ~ 52598398 (-)
G1388023 NA non-coding downstream 12656 52593568 ~ 52593778 (-)
G1386889 NA non-coding downstream 516602 52089251 ~ 52089832 (-)
G1386888 NA non-coding downstream 520398 52085821 ~ 52086036 (-)
G1386887 NA non-coding downstream 521119 52085109 ~ 52085315 (-)
G1388044 NA non-coding upstream 22619 52640675 ~ 52640919 (-)
G1388050 NA non-coding upstream 28504 52646560 ~ 52646800 (-)
G1388104 NA non-coding upstream 120781 52738837 ~ 52739737 (-)
G1388105 NA non-coding upstream 121704 52739760 ~ 52739987 (-)
G1388083 trim33 non-coding upstream 133704 52751760 ~ 52753211 (-)
spen LOC106566857 other downstream 177675 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 616439 51978399 ~ 51990025 (-)
G1385888 NA other downstream 1477786 51090645 ~ 51128648 (-)
dffb LOC106566885 other downstream 1491369 51113403 ~ 51117850 (-)
G1388236 NA other upstream 413876 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 1112281 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1926672 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 2366762 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 3206103 55824155 ~ 55826646 (-)
G1388036 NA non-coding downstream 5538 52611801 ~ 52612137 (-)

Expression


Co-expression Network