rassf11 (LOC106566932)


Basic Information

Item Value
gene id rassf11
gene name LOC106566932
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52687559 ~ 52692433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566418.2
aggtgggcaGTGGGGGGAATTGGCACAGCAGTTTCCCTTAGGACTGATTCCTGGCCCCAACTGGTCATCTTGAGGCAGATTAGAAATAACGATACACATGATCTGATACGCATGATACGCATTATTGGCAAAgtgatatttatttaatttttgatttaacctttatttaactaggcaagtcagctaagaacaaattcttatttacaatgacggcctacatatAAAACTGTACTGTACATTGTATTGTCATTATCATGAATCATGGATGATATACTCAAATTAATTTCTAATTATCAAAGGAATATGGCATGACATTGTAAAAATAAGCATATACAACAGAGCACAGCCTTATGAACAACGGTTTCCTGGAAATATTATGTCCAAAATGAGACAAGTCctgaaaaaatgtatttcacaatTTCCCATAAAATGTTTAAGCTATAGCACTAAAGAGCCACACTACATCATTATGCGAGAATAGTACCAATTAGCCTATTGCATATCTTGTATAGAGGGCCCATATTTTTGCACCTCAACATTCTGGAGTTAAGTTTACCATCTCACTTCTAAGCAACAAATCACAACTGTCAGAATTTGTTATGAACAATGCAACTGAACAACCAACTTCCCAAAAAACTGACCAATTGATATCAAGAAGTAGTCTTTTAATTTGGGTTAGATTTAATTCATGTAATTCTATTACATGAAATGAAATCTAATCTTCTACTTAACACTACTGATTACAGCTCAGACACCACTTAGATTCAAGCAACCaagtgcaaacaaacacacatgaaCAAACATAACCTCTTTCAACTATCTGTCCTCCTTGTCTGTCCTGGTCTGTAGCTCACCATTAAGCTATGAGGCTGGGAGCAGCTGGACATGTGGTTTGCGTTGCAGAATGGGAAGGGTTCTAATTTTCAACTCTCACATTTCTCCTAACATTAACCCGTCTCGGGAGGAGGGCCTGGCAGGCTGAAGAAAAGTTTGACAACAGGTGTTCCACTTCTTTTACTCCAGCAGTTTACGTTATGTATTTAGTCTAGTGCACATTCTAGCCTAATTCACTCCTGTCCCAAAACTATCCAAAACAAAAGCACATGTTGTAAAATAATATACAACCTCAGTCCCAATAGTTTGGCACAGGAGTAAATTAGAATGTGCGCTAAACACAATGTAAACTACCCATTTTTATTTGGTATACAAGCGACTTATCTGTTGACTAATGAGACTAAGAATTTGAGTGGAGAAATTACAAAACCTTTGCTCCCTCTTGTGGGGTGACCGAGCTTAGATATCCAACACCATATTTTCAGTTTAAGCTTCATTTGTACAGTGcgagccatagaaatagaatggatAGAGTGAGTGTCCCCATTCAAGTAAAATATGACATAATAGGTGGATTGGTGGCCATTGGGAGTGTACacataggagcaaagcaggaagtaaaagcaggaattGTACCCATCAATCTGTGCTGTAATTTGTTGAATCAACTCaacattacaaaaaaatacattccattgcatgagccacatttgTTAGCATTATTTCAATGAACaatctacattaccatggaaataattgcatcacaattccagacagccattgcgagtgtaccaCATGAGTTTACCAGTAAAATTGCCAGGattagaggttccaagcctgttctattgattctatttctatggtatgAGCATCCTATTCAGTTGAAGGTGTTATTGGCAGTAACAAAATGTATTTAAGAATATCCATTCCCTACAACATCTAATCAGAGCACTAGTTTGGATAACTTGTCAGGGGTGCTGTGGAAGTACATTTACAAGCATTTTGCTGTCAAGATTCATGATGAACAAGTGTCAGTAGCTAATAAGGGATTACTGTACTGTTCAACAAGGCTGGAGACTCAAAaccaaaagtatttggtcaatcgAAGGCAAATCATATAACAGTTGTGGAATGCTCTAGAACTTGGCGTACTGGAGCTTTGGACAGTTTACCAGACTGTTTATATTTTCCGTTCCGATAGGGATCCCCCTTCCTGTCAGAAAGATACACAAAAACACCCAGAGCCAAAAATATCTGACAGTTTTCTGATGCAAGTGAACCAATGTTGATAGTATTTGGTTAGCTCAAACAAACTAAGTAGCTAAGAGTTTATGTCAACTTGGATTTTAATTTATACCCAAATTAGACTATTTATTTTTCTTGACGCAACAATGCCATTTTGAAAATAAATAACACAATGCATACAAAGTTGTCAATTTATCCATTGTATTCAAGTATCGTAAAAGACAAACAAAATGCCATTTTAAGCATAAATATAGCAAACCTACTGATAAACTTTCCGAGTCTAATCTGTGCAATTTTCACACAGATCAGCCCTCAATCTTTTTTTGAGAGGAGTGGGATAATAAACTTCCCTGCAGTAGTAGTTACCCAAGGGAATTCAAATTGGCCTTACTCACTCCACGGTGCTCCTCACAAGACCGTTTCCATCCCTTTCAGAGCATTGTGCCTTCAGTATAGTGGACGGCTCCCAGCATCGGCTCTAAGAGAATAAGAATGGAGGTTAAGGTATCAGTGGAGGGAGTCCCACGTGTTGTCTGTGGAGTTACTGAGAAAACCACATGCCAGGAAGTAGTCATAGCTTTGGCTCAATCCCTTGGTCGTCCTGGGCGCTACACACTTCAGGAGAAATTCAAAGAGTTTGAGCGAAATATGACGCCTAATGAACGGCTTCTGGAGTCTCTTGAGAAGTACGGCCAGCAGGCCAGAGAGATCCAGCTCACCCTGCTGCACAATGGGCCATCCCTCTGGGAAGGGCCTAGCAGAGCGAAAGGCAGCAGATACGAGGCTGGCCCTCAGCTTAGGAGAGCAGATGCTGGGGGCAAGGTACAAAGGCTTAGCGGTGGGTTTAGTTTACACCGTCAAAGCCTCCCTCCCTTATCGTGCCTGCGGCAACAAGCCGAACAGCGACCGGAAGAACCAAAAAAGCCCAAAAGAAAGTCCCTGACCCTGATGGAGGAGGCTTGGGGATGGCTGGAGAGCATAGGAAGGGGCACAGTGAACCAATCAAGCCGCGAAAAGGGTAGCAGGATGGACACGGTTAAAAGGGATGGTTGTTCCCTGAACGTTACGGTCACTGTTGCCAAGGATCCCTCCACTCCTGGGGTTTTGCAGAGCAAATTTAGAGAAAAGAGTGCTAAGTCCACTGAGCACCAGCGAATCTCCTGCTGCATGGGAGACCagggcagggacagagagaaaagtAACCTTTTCAATTCTGATGAAGGTAATGATATCCAACATGTTAAGAAACACCCAGAGGTTAGCATGGCAAAGATAAAAGCTGAGGGCCAGCAGAATCCAACCAGTGCCCTTAAGATGGTTGATGAGAAAAGGAAGTTAAGAGCACTAGTTGCGATCCAACAGGCTAGTCTGAAAGAGCTGCAGGTCCAAATAACCTGCACGGATAGCCAAATTCATGAGCTGGAGGAGCAACGAAAGGCCAGGCAAGCTGACCAAGAGGCCCAGCAAAAAATAGTGGAGGAGGCAGAGCACCTGGaattttggaaaaatgagctgaAGGCCGAGGAGGGATATGAGAAAGACTTGCAGGAACAGTTCCTGGAGATGAAGGTGAAAGCTGTGGAGTGTAAGGCCAAGTTAGAAGAGTACAAACGCAAAATGCAAGGTCTTGATTCTTCAAGGGACAGGAGAACTGTTCAAGAGGAGCAAGTGAACGTTCCAAGCCAAGATGCCACATCTCCTGCTGCTGCAGGGTGGACAAGGCTGAATGAGGCCCTGAATCAATCAAGACCTCTTACAGTCAGTGTGGTAAATACTGACAGGAAGTTTGCGTCCAGAGTGGACTCCAGTCATCCTCATGCTGTAGTTCTTCCAAACCAGATCAAGGAATTGCGGCCCTCAGGGCCAAGTCAGCTTAGGGACTGGTGGACATGCTGGTCTGAAGCTCAGAGTCCAAATCCAGAAACACAACCAAGGGTTGTGCATATCTCTGAAATAATGATACATCTGGGCAGCACCAGAGTTTGAAAAGAGGTTGAGGAAAAACGGAAACGTATCTGTAAAAACCAAACACAATATAGCCTTAGCGTTCAGCGAGGACTGTGAGgcaacaaacataggcacagacatgcatacacacacgtacacatggattttgtactgtagatgtgttaatggtggagtaggggcctgagggcacacagtgtgttgtgaaa

Function

NR:

description
ras association domain-containing protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566418.2 True 4253 mRNA 0.42 3 52687559 52692433

Neighbor

gene id symbol gene type direction distance location
LOC110491093 LOC106572282 coding downstream 69503 52606434 ~ 52618106 (-)
LOC110492250 LOC106566852 coding downstream 110416 52566433 ~ 52577143 (-)
tmem240a LOC106566854 coding downstream 155334 52514283 ~ 52532225 (-)
LOC110492247 LOC106566856 coding downstream 183882 52489746 ~ 52503677 (-)
atp13a2 atp13a2 coding downstream 198294 52452964 ~ 52489265 (-)
LOC118939555 NA coding upstream 86062 52778495 ~ 52780254 (-)
LOC110491094 LOC106566841 coding upstream 111992 52804425 ~ 52837293 (-)
LOC110491095 LOC106566922 coding upstream 145295 52837728 ~ 52856339 (-)
LOC110492261 LOC106566840 coding upstream 172735 52865168 ~ 52874886 (-)
bgna LOC106566838 coding upstream 188174 52880607 ~ 52888213 (-)
G1388050 NA non-coding downstream 40759 52646560 ~ 52646800 (-)
G1388044 NA non-coding downstream 46640 52640675 ~ 52640919 (-)
G1388036 NA non-coding downstream 75422 52611801 ~ 52612137 (-)
G1388025 LOC106600668 non-coding downstream 89161 52598160 ~ 52598398 (-)
G1388104 NA non-coding upstream 46404 52738837 ~ 52739737 (-)
G1388105 NA non-coding upstream 47327 52739760 ~ 52739987 (-)
G1388083 trim33 non-coding upstream 59327 52751760 ~ 52753211 (-)
G1388110 NA non-coding upstream 89175 52781608 ~ 52782117 (-)
G1388114 NA non-coding upstream 95817 52788250 ~ 52788766 (-)
spen LOC106566857 other downstream 258800 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 697564 51978399 ~ 51990025 (-)
G1385888 NA other downstream 1558911 51090645 ~ 51128648 (-)
G1388236 NA other upstream 339499 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 1037904 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1852295 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 2292385 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 3131726 55824155 ~ 55826646 (-)

Expression


Co-expression Network