LOC110492267 (LOC107599000)


Basic Information

Item Value
gene id LOC110492267
gene name LOC107599000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52923535 ~ 52931690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566440.2
GCTTAAATATCTGTCACTCATTAATTTGAGGTTTCCTATTGGCTGGAGATCACGGGCTTAGGCGGATGTTATCGGCGTGGCACACTGTTGGGGCCGGATTGAAGGGTCGgacaggaaaagagagggaaggcGAGGACATCTGTAACGAAAACGATGGCTGCGATCCGTAAGAAGCTGGTGATCGTGGGAGATGGTGCTTGTGGGAAGACCTGTCTGTTgatagtcttcagtaaagaccaGTTCCCTGAGGTCTACGTACCTACAGTGTTTGAGAACTATGTGGCAGATATTGAGGTGGACAGTAAGCAGGTGGAACTGGCCCTCTGGGACACAGCCGGACAGGAGGACTACGACAGACTAAGGCCTCTCTCCTACCCTGATACTGACGTCATCCTCATGTGCTTTTCCATAGATAGTCCTGACAGCTTGGAGAATATCCCAGAGAAGTGGACCCCTGAAGTAAAGCACTTCTGTCCAAATGTGCCCATCATTCTTGTGGGTAATAAGAAGGACTTGCGGAATGATGAGCACACACGCCGGGAGTTAGCAAAAATGAAGCAGGAACCAGTGAAGCCAGAGGAGGGCCGGGACATGGCTAACCGCATCAACGCGTTTGGCTACTTGGAGTGCTCAGCCAAGACGAAAGACGGTGTGAGGGAGGTGTTTGAGATGGCCACCAGGGCGGCGCTGCAGGCCAAGAAACGTGGCAAGAAGAATGCCTGCCTCCTGCTATAGAGAGCTGGGGAAAGACGGGAGGGGTAAATAAATCAGGCCAAGGAAAATGCTGCacccctctgtctccatctgtgGAAGGGTGGGGGAGGTTTGAGGTGTGTAAGGGAGAAAAAGATAATTAACAAGGCCTAAGGAAATGGAGAAGGTCAAATGTAATGAAAAGGGGAGTTTACATTTTTAAGGCCAAGGTGGCAACGGCTTTCAGTATAAGATTATCGTATGGTTAAGATTTTTTATTGGGTCTTGGATGACTAGAAGGGTAAAGCAAAAACACTATCTCTGGTAAACCTATGTCTGAGCGTGGTAGTGATCTCTGAGGGACAGGATAAGATTGTTCTTGATCGGGTCAGAAACCCCAGCGCTATTGGCCTGGTTCATAGAGCGGAGCATCATCAGAGAAAAGGGGGGATTCATTACATCGGAATGAATGTATGTTCTGACTCTCGGTGACCTCCTTGGCTTGCAGTGTGTCAGTGCTTGTCTTTAATTTCTGTCCAGCCATACCATAGGTGTTTATTTTCTTTGTTCTCCCTATGGATAGACTAACCCTATCCTTGTGTGGACCAGCACCTCCTATCATATTATTGGTCCAATCACATTGTTCACTTGATACAAGcaattttgatttatttaaatagctaaatgtttttatttgccTTTGACTATAGAATTCATATTAAAATGCATACAATAATGATACCAACTGATTTTTGTTAGTTTTATAAGCCTGTTCATAAATTGTAATGAAATTATTTTAGAATTTGGTTTTGTCGTAAGTTGGGCTCAAGTCAGATAAAGATGTACATTTGATGTGGACTGTCAGACACGGGTTTGAAAGGGGAGTATGACTTTTGTATTAAGTGATACTAAGTTTAGCAAATTTGGGGTTTTGCAAATTTTGTATTTTCTGCTTGCAGATTGTTTTTGCCTGCATGCCAGGCTGTTATTGGGAGtgagttttttttaaagtgttgaCCTATCtcactccctccagtccaccccacACTCCATGTCTTTCTAACAACTGTTGATGATGGCTTATGGCTTTTCCTATATCAGTTATGCATATTTAGCAAATCTAGTAACTTTAGAATGaaagtttaaaaataaaatgcaAAATGCTTAAAGTAATTCATGAATAAGATGTCAAACTATTAAATAGAAGTAACTTTAAAAAGATCTCAGTCatttgaggggggaggggtgttgTACACATGCATCCTCACATTTCCTCAGTCCTTTTAAATGTACTCTAAGAAAATACATTGTTATAGGGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566440.2 True 2013 mRNA 0.43 5 52923535 52931690

Neighbor

gene id symbol gene type direction distance location
LOC110492264 LOC106566837 coding downstream 23554 52888394 ~ 52899981 (-)
bgna LOC106566838 coding downstream 35322 52880607 ~ 52888213 (-)
LOC110492261 LOC106566840 coding downstream 48649 52865168 ~ 52874886 (-)
LOC110491095 LOC106566922 coding downstream 67196 52837728 ~ 52856339 (-)
LOC110491094 LOC106566841 coding downstream 86242 52804425 ~ 52837293 (-)
LOC110492268 LOC106566834 coding upstream 1414 52933104 ~ 52937689 (-)
LOC110492269 LOC106566831 coding upstream 18966 52950656 ~ 52961940 (-)
LOC110492270 LOC100380632 coding upstream 31767 52963457 ~ 52997652 (-)
LOC110492271 ccd22 coding upstream 104407 53036097 ~ 53043475 (-)
LOC110492274 LOC106566829 coding upstream 166191 53097881 ~ 53146173 (-)
G1388173 NA non-coding downstream 7044 52916182 ~ 52916491 (-)
G1388172 NA non-coding downstream 8142 52915102 ~ 52915393 (-)
G1388147 NA non-coding downstream 43661 52879244 ~ 52879874 (-)
G1388137 NA non-coding downstream 72835 52850355 ~ 52850700 (-)
G1388234 NA non-coding upstream 99740 53031430 ~ 53031717 (-)
G1388238 NA non-coding upstream 101792 53033482 ~ 53033695 (-)
G1388220 NA non-coding upstream 140881 53072571 ~ 53072804 (-)
G1388249 NA non-coding upstream 141412 53073102 ~ 53073310 (-)
G1388265 NA non-coding upstream 162855 53094545 ~ 53097524 (-)
LOC110492250 LOC106566852 other downstream 351228 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 494776 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 933540 51978399 ~ 51990025 (-)
G1385888 NA other downstream 1794887 51090645 ~ 51128648 (-)
G1388236 NA other upstream 100242 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 798647 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1613038 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 2053128 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2892469 55824155 ~ 55826646 (-)

Expression


Co-expression Network