LOC110492270 (LOC100380632)


Basic Information

Item Value
gene id LOC110492270
gene name LOC100380632
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 52963457 ~ 52997652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566449.2
GTTCTCTTTGTTAGAACGTTGAGACGGTCTCAGTATATAGATAGCCTCTGTTGATGATATACTGTCATCCTTGTGCATCTGACTCAGTTGCTACTGTATCAACTGTAGCCTACATTTAGGTTTGAATTAGATAACGTTCTGGAGATACTCTGATAAATGCTAGGTAGTAATGTCCTGTCAAAAAATAAGAAAGTTTAGCCATGCGTTATTGCAGAAAAGTAAGACAGCTTCGCTTTGCAGGGGTTTAAAAACATCTGTTGCGTCTTATGGTAACGTGGCATCTAGAGGTCCGACCAACCAAATAGGAAAATGCTGCGAAAATGGTCAAAGTTGTGGATCAAATTCGGGTATCCAGGCCACAGGGTCCACAGCCATCCCAACTTCTCCATCACCCGCAAATCACAGACAAGTCGCAGGCAAGAAATTTAAGGAGGTGTCGCCGAAGTTTTCTGAAAGGGCATTCACTACAGCACCCAAGATTGACTCCAAGGTGTACCTTTGGTCAAGGTATAATGAGATGAAACGACTTGTGCACGATTTGATTCCTCCAGGTGTATGTAGCTTACTGAACCCCTCCACCATCTATGCCAACAATGAGGTTGACTTGGACGAAGTGGAAATCTATGGCTTTGATTATGACTACACGCTCGCTTTGTACTCCAACACTCTTGATACAATGATCTACAACACAGCTCGAGACTTCCTTGTCAAACACTACAAGTATCCAGAGGGCATTAGCAAGTATGACTATATTCCCAACTTCGCTACTCGTGGTCTCCACTATGACATTCAGAAGGGACTGTTGATGAAAATTGATGCCTTCCATTACATTCAGCTGGGGACTGTATACAGGGGTCTGAATCCTGTCCCAGATGAGGAGGTTTTGGAGCTCTACGGTGGAACTAACCATGTCCCTCTTGAGGAAGTCAGTGGCTTCTATGGAAAGGGTCCTGTGATGAAGCAGTTCATGGATGTTTTCTCCATCCCAGAGATGACTCTCCTGGCTGCTGCCAATGACTACTTCAACTCCAATGACATTGAATATGACCCTGGTCATCTCTACAAAGACGTTTCAGATGCCATTGGAATGGTGCATATCAAAGGCTACATGTACAAGTGGATAATGCAAGACTTGGAGAAATATATCCTCAGAGGTGATGAGACATATGCAGTTCTACACCGTCTGGCAAGCCATGGCAAGAAGCTCTTCCTTATAACCAACAGCCCATTTAGCTTTGTAGACAAAGGGATGAAATACATGGTAGGAAAGGACTGGAGGGAATTATTTGACATTGTCATTGTTCAAGCTGACAAACCACACTTCTTCAACAGCTGTGGCAAACCTTTCAGACGTTTGGATAGCAACGGGGACCTTCAGTGGGACAAGATCACGAGCTTGGATAAGGGCCAGGTCTACAAACAGGGCAACCTGTTTGACTTTCTCAGGCTCACAGGATGGAGAGGATCCAAGGTGCTGTACTTTGGAGATCATCTGTACAGTGACTTGGCAGACCTGATGCTGCGTCACGGCTGGCGGACAGGAGCCATAGTACCGGAGCTGGAGGTGGAGACCAGGGTTGTGAACACGGAGCAGTATGCCCAGGGCCTCACCTGGCTGCAGGCACTCACCGGTCTGCTGGAGCGCATGCAGATGCATCGAGATCCAGAGTCAAAGAAAGTTCTGCAGGATTggttgaaggagagagaagagcttCGAGCTGTGACCAAGAACCTGTTCAACCCTCACTTTGGTAGCATTTTCCGCACCTGCCACAACCCCACCTACTTCTCCCGTCGCCTGTGCCGCTTCTCTGATGTCTACATGGCATCCATCAGCTGTCTGCTGAACTACGACCTCTCCTACACCTTCTACCCTCGTCGCACCCCCCTGCAGCATGAGGCTCCCCTGTGGATGGACCAGCTTTGCACTGGCTGCATGAAGACTCCCTTTCTGGAGGAGATGGCTCACATCCGCTGAGAGGGGCAATCCAAGATCTCACAAACCGCAAACTGAATATGAAGATGCAGGAACTGAGGCTAAGCTGAGAGTAAGGAGGCATGGTGGACAACCCAGAACAGGTTAAAGGTTTGCACGGATCATGAGTGCCACCTGCTGGGTTATTGTATgccagtaggcctacagtagtagcaTATCATAATATCTGCCTATTCAAGTCACCCAATAGAACTTGGTTGGCCAGGACATTTGATGGGTTTAGCCATTAGTTTTACTTTTTAGGTTAGTTAAGGTTGTAACTTGTTATCCACACCATGTACAAATGTATGTTTTTGATATCTGTCACATGATTGACTTTTTAAATCTCATTTTAACCATGTAGCCTGTAACGGACTGATGTCATATAATGACATACAGTATCTTATGACCGCATCAGTTTGTTTTGAGTAATGGGTCttgattattataattttttacaaGTATATTTTAAGTCATTGGTGTTACCGCCTTGAAAATCACTCATTACAAAGGACCTTGAGCATAGGGGCCTATATTAAAGGAAAGGATTAGTTAATCAAACCCTTTTAGTGTGTCGTAAATGTGAGGATTGAGAATTGTGTTTAAATAAAGTGTCATTGGTGTTGCATTGTGAGAAATTATTAA
>XR_005036542.1
CGGATATTTGTTCTCTTTGTTAGAACGTTGAGACGGTCTCAGTATATAGATAGCCTCTGTTGATGATATACTGTCATCCTTGTGCATCTGACTCAGTTGCTACTGTATCAACTGTAGCCTACATTTAGGTTTGAATTAGATAACGTTCTGGAGATACTCTGATAAATGCTAGGTAGTAATGTCCTGTCAAAAAATAAGAAAGTTTAGCCATGCGTTATTGCAGAAAAGTAAGACAGCTTCGCTTTGCAGGGGTTTAAAAACATCTGTTGCGTCTTATGGTAACGTGGCATCTAGAGGTCCGACCAACCAAATAGGAAAATGCTGCGAAAATGGTCAAAGTTGTGGATCAAATTCGGGTATCCAGGCCACAGGGTCCACAGCCATCCCAACTTCTCCATCACCCGCAAATCACAGACAAGTCGCAGGCAAGAAATTTAAGGAGGTGTCGCCGAAGTTTTCTGAAAGGGCATTCACTACAGCACCCAAGATTGACTCCAAGGTGTACCTTTGGTCAAGGTATAATGAGATGAAACGACTTGTGCACGATTTGATTCCTCCAGGTGTATGTAGCTTACTGAACCCCTCCACCATCTATGCCAACAATGAGGTTGACTTGGACGAAGTGGAAATCTATGGCTTTGATTATGACTACACGCTCGCTTTGTACTCCAACACTCTTGATACAATGATCTACAACACAGCTCGAGACTTCCTTGTCAAACACTACAAGTATCCAGAGGGCATTAGCAAGTATGACTATATTCCCAACTTCGCTACTCGTGGTCTCCACTATGACATTCAGAAGGGACTGTTGATGAAAATTGATGCCTTCCATTACATTCAGCTGGGGACTGTATACAGGGGTCTGAATCCTGTCCCAGATGAGGAGGTTTTGGAGCTCTACGGTGGAACTAACCATGTCCCTCTTGAGGAAGTCAGTGGCTTCTATGGAAAGGGTCCTGTGATGAAGCAGTTCATGGATGTTTTCTCCATCCCAGAGATGACTCTCCTGGCTGCTGCCAATGACTACTTCAACTCCAATGACATTGAATATGACCCTGGTCATCTCTACAAAGACGTTTCAGATGCCATTGGAATGGTGCATATCAAAGGCTACATGTACAAGTGGATAATGCAAGACTTGGAGAAATATATCCTCAGAGGTGATGAGACATATGCAGTTCTACACCGTCTGGCAAGCCATGGCAAGAAGCTCTTCCTTATAACCAACAGCCCATTTAGCTTTGTAGACAAAGGGATGAAATACATGGTAGGAAAGGACTGGAGGGAATTATTTGACATTGTCATTGTTCAAGCTGACAAACCACACTTCTTCAACAGCTGTGGCAAACCTTTCAGACGTTTGGATAGCAACGGGGACCTTCAGTGGGACAAGATCACGAGCTTGGATAAGGGCCAGGTCTACAAACAGGGCAACCTGTTTGACTTTCTCAGGCTCACAGGATGGAGAGGATCCAAGGTGCTGTACTTTGGAGATCATCTGTACAGTGACTTGGCAGACCTGATGCTGCGTCACGGCTGGCGGACAGGAGCCATAGTACCGGAGCTGGAGGTGGAGACCAGGGTTGTGAACACGGAGCAGTATGCCCAGGGCCTCACCTGGCTGCAGGCACTCACCGGTCTGCTGGAGCGCATGCAGCATGTACACGaagtacaccatcatgctttcTGGATACGCGTCTTTTCAGATTCCAtaatgattctttagttgtggacactataTCACCGCACTCCCCCTCTTGTTCTTGGTCCTCATCCTTATGCATCGAGATCCAGAGTCAAAGAAAGTTCTGCAGGATTggttgaaggagag

Function

NR:

description
5'-nucleotidase domain-containing protein 2-like isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566449.2 False 2620 mRNA 0.45 14 52963457 52997643
XR_005036542.1 True 1834 mRNA 0.46 14 52965192 52997652

Neighbor

gene id symbol gene type direction distance location
LOC110492269 LOC106566831 coding downstream 1517 52950656 ~ 52961940 (-)
LOC110492268 LOC106566834 coding downstream 25768 52933104 ~ 52937689 (-)
LOC110492267 LOC107599000 coding downstream 31767 52923535 ~ 52931690 (-)
LOC110492264 LOC106566837 coding downstream 63476 52888394 ~ 52899981 (-)
bgna LOC106566838 coding downstream 75244 52880607 ~ 52888213 (-)
LOC110492271 ccd22 coding upstream 38445 53036097 ~ 53043475 (-)
LOC110492274 LOC106566829 coding upstream 100229 53097881 ~ 53146173 (-)
foxp3-2 foxp3-2 coding upstream 167852 53165504 ~ 53181656 (-)
LOC110492276 LOC106566827 coding upstream 208619 53206271 ~ 53211578 (-)
LOC110492279 LOC106566931 coding upstream 215680 53213332 ~ 53217735 (-)
G1388173 NA non-coding downstream 46966 52916182 ~ 52916491 (-)
G1388172 NA non-coding downstream 48064 52915102 ~ 52915393 (-)
G1388147 NA non-coding downstream 83583 52879244 ~ 52879874 (-)
G1388137 NA non-coding downstream 112757 52850355 ~ 52850700 (-)
LOC110491095 LOC106566922 non-coding downstream 113946 52837728 ~ 52856339 (-)
G1388234 NA non-coding upstream 33778 53031430 ~ 53031717 (-)
G1388238 NA non-coding upstream 35830 53033482 ~ 53033695 (-)
G1388220 NA non-coding upstream 74919 53072571 ~ 53072804 (-)
G1388249 NA non-coding upstream 75450 53073102 ~ 53073310 (-)
G1388265 NA non-coding upstream 96893 53094545 ~ 53097524 (-)
LOC110492250 LOC106566852 other downstream 391150 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 534698 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 973462 51978399 ~ 51990025 (-)
G1385888 NA other downstream 1834809 51090645 ~ 51128648 (-)
G1388236 NA other upstream 34280 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 732685 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1547076 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1987166 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2826507 55824155 ~ 55826646 (-)

Expression


Co-expression Network