LOC110492274 (LOC106566829)


Basic Information

Item Value
gene id LOC110492274
gene name LOC106566829
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53097881 ~ 53146173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566454.2
CGGTTGGCTAGAGAGGTAGCAAGAATGGAACAAGCGGCTTGAACactggagctcagagagctgttGAGGAAGAACAAACGCATAGAGCCTAACACCTGCCAGACTATTTTACTATTTTAAGTGTTAATATTTCCTGAATTTGTCTATGCCTGGATTTGTCATTCCGGAGTTTTCAGGGGACGATGACTTAAATGAAAACGTGAGAGATTTCTAAAGCATCACGTAATTTCCATGCATGTAATTTGAGGAAAAGTGCTCTCTGCATGAAGCAAACTTTTTGACAACTTGCGAAACCTTACCAAGCAGTGGGTCTACGTGAAGCAGTATTACACGTTTACATTGCCTACGGTGATACACATTTtctactattagtttggaggcaGATTTCAAACGTTATCATTTTCGGTAGGCTAAACAACGCCACAGAATGTGACATCTACTGTCTCGCGACGACGCCGACTGAGCATACCTGCATTGCAAGACTCCAAAGGTTAACTCTGCCTTCATTGCTATGGAGACCACCCAagccctcctcttctttctcctgaGTTTATGTGTCTACAGTTGCCATGCCGACGCTCGGACTGCTCCCAGAGTGCATTTGTCTTACAAAGAGCTGTTGGAGACGCGGACGGCACggcccttctccttctccttcaacaCCAGTGACTACCGCATCCTGCACATGGACCAGGACCAGGGCCGTCTCTACCTGGGCAGCCGGGAGTACCTGGTGGCCCTGGACATGCACAACATCAACAAGGAGCCCCTCATAATTCACTGGCCGGCCACTAcccagaggaaaggagagtgtAGAATGACTGGAAAGGGTGGGCAGGGGGAGTGTGCAAACTTTGTGCGTCTGATTGAACCCTGGAATCGCACACACCTATACACCTGTGGCACAGGGGCCTATAAGCCTATCTGCACCTTCATCAACAGAGGATGGAGAGCAGAGGTAcggacacacacatgcgcacagacacacacacaaacattcctACCTCCATATATTGCCCTCTCTGTGCAGGAGTACCTGTTTAGGCTGGTCCCTGGCTATGGGGACTCAGGGAAAGGGAAATGCTCATATGACCCTCGACAGGAGAACGCTGCGGCCCTTATCAATGGGAATCTGTATGCAGGGGTCCACGTTGACTTCATGGGCACGGATCCGGCCATCTTTAGAACCCTGGGGGACAGACCTGCTGTCAGGACGGAGCAATATGACTCCCGCTGGCTGAATGAGCCAGTGTTTGTTAAGATCCAGCAGATTCCTGACAGCTCCGAGAGGAATGATGATAAACTCTACTTCTTCTTCCGGGAGAAGAGTCTGGATGGTGCCGGGGGGGCCAGCCCCAGTGTCCTGGCCAGGGTGGGCCGAGTATGCCTGAATGATGATGGGGGTCAGAGGTCACTGGTCAACAAGTGGACGACCTTCCTGAAAGCTCGGCTGGTGTGCTCAGTGATAGGGAGCGATGGTGTGGAGACCTATTTCGACGAGCTGAAGGATGTCTTCATTCAGCCAACACAAGACCTTCGCAATCCTGTCGTGTACGCCGTCTTTTCCACTGCGGGTTCTGTGTTTAAGGGCTCAGCCGTGTGTGTCTACTCTATGTCCGACATCCGCAATGTCTTCAATGGCCCTTTCTCACACAAGCACGGACACAACTACCAGTGGACCCCCTACACTGGAAAGATCCCCTACCCTCGCCCTGGAACATGTCCAGGAGGAACGTTTACCCCAGGCCTCCGCTCCACCAAGGAGTTTTCGGATGAGGCTGTGAACTTTGTGAGGGCTCACCCCCTCATGTACCACTCTGTCTACCCCATACACAAGAGGCCTCTGGTGGTGCGAACGGGGGTGGACTACCGCTTCACCTCCATCGTGGTGGACCTGGTGGATGCTGTGGACGGGAGGTATGAGGTGCTCTTCCTGGGCACTGATCGTGGGACAGTCCAAAAGGTGATAGTACTTCCTAAAGACACTAGCACAACGGAAGAGCTCACgttagaggaggtggaggtgttCAGGAATCCAGCTCCTATTAAGACTATGAAGCTATCATCAAAAAGGCAACAGCTGTATGTGTCGTCAGAGATGGGGCTTACCCAGGTGTCCCTGCACAGGTGTGGCGTCTATGGGAAGGCCTGTTCAGACTGCTGCCTGGCCAGAGACCCTTACTGTGCCTGGGATGGGGAGACCTGCTCTGCCTTTAGCCCCTCCACCAAGAGGCGGAGCAGAAGACAGGATATTAAGCATGGAGACCCCTTGCGGCAGTGCAGAGGGTTCAATGCAAAAGTTGAGAAGCGTCTCAGTGAAACAGTGCAGTTTGGGGTGGAGGGGAGTAGCACTTTCCTGGAGTGCCAACCCAGATCTCCACAAGCGACAGTCAAATGGCTCTACCAGAAACCAGATGGCAGGAGGAAAGTGCTGAGccgagacagagaggtgctgaaGACTGGTCACGGCATCCTGCTTAAGTCTTTGAGCCATGCCGACGGGGGGCTGTACAACTGCCTGGCCACCGAGAACAACTTCAAGCACACGGTGGCCCGCGTGGCCCTCCGCATCCTGGACCGGGAGATTGTGGAGGCCCTCACCTCCCCGGACGGTCCCCCGGAGGACCAGAACCCCCATCACCACcgacacccccaccaccaccctccgCCTCCACCACCCCCTCCTCACAACTTGCCCCCGCAGTTCTCCTCCCAGCCGGAGATCCGCCTCATCAACCAGTACTGTCAGTCCTACTGGCAGCAGCTCAACCTCAACCTGCCCACCAAACGCACTAGCAGGAGGCACACTGAGAGCCAGCCAGAGCCAGCCCCGGGAGTCCCTAGCCAGTCCTAaatcccatctccctcactctaCTTCACTGGTACCTGGGCCAGGCCCTGTAGGGCCACTGTGGCCCTGCACAATGGTAACGGGCAGACTCACTCATGTTGttgtgattttgttgttgttgttgttgtttatctcacTCCCATTTAGGGTTAGTCTCCATGAGCCCAATTCTAACTTTAGATCTGTGCACATAGCTCTGTGGTTTCTTGCAAAATTGGTGTTACACACACGGGGTGTTTGGTCACATGAATATTTAGATTAATCTGCAAAACTACCCTATTCCGTCCAAGCTAGTAACCTGGTTAGTAACTAGTAACTAGTTAgagccttgaatgctgattggctgacatccgtggtatatcagaccgtataccacaggtatgacaaaacatttatttttcctgctgtaattatgttggtaaccagtttataatagcaataaggtacctcaGGAGTTTGtcgtatatggccaatataccaaggctaagggCTGAATCCAGGCCCTCTGCGATGCTtagtgcctaagaacagcccttagtcgtggtatattggccatataccacaccccctcatgccttattgTTTAAGTATGTCACATTGTATTGTATCACTCAGTGTAAGAAATTTTAGAAACTGCAGAGGATTTTGTTAGTGTACACAATAGTTGCCTAGCCACCACCATGGTAGTTAGGTGATATAGAGACACTGTATCATATGATTCATTGTAAAATGTGTCACATGTTGTATGGCTGCCTCAACCTCACTTTTTACAATCCATTTGATccactgaatctagttgatgaaaCATGGGCAATTTAATAGTATTACGTATATTATGTTTCCATTCTAAATATTGTTACAATAGAATCCTGCCAATGTCAAGTCAGAAAGAATAAGGCTCAGTTTTGGGTCGTTCTTGAATTGCGGTGGTATCTGGCCTTGGCATTTTggcaaaaatagttttttaatgtttaaaaaatggGTTCTATTCTAAATCAACTAATGTGGAAGTTTAATGACTAATTATTTGTACCATTATGATTACATTGTGCCATCAGTAGGAGTAGTGACAGCAATGACTGTCACACCAATGACTGTCACACCAATGACTGTCACCCCAATGACACATTTAAGGTAATAGTGGATTTTCTTAAATGGAGGCCACAAATGTTCAAATCTAAGGTCACAATGTCATTTCCCTTCTTTTAAATTGAGTAACACCAATGACACTTTCCATTTACACATACTAAATGATCAATGGAATCCTCAAATTTGTGACATACTAAAAGGGTGTGATTAGCTAATAACTTTCTTTAATATATTGGGGAGGCCAATAACAATTTGCCGCTCGAGGGATTGCTAAATGTCCTTCTATAACACCAATGACATAAAACTTAGGGTCACGtaatatttgtaaaaaaataaaaacaataaaaacaattGCCAGGGATGGGCAACGGCAGCTCACTTtcggaaacattttttttttagccctttttctccccaatttcatggtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgggagagacgaaggttgaaagtcatgcgtcctccgatacacaacccaaccaa
>XM_021566456.2
CGGTTGGCTAGAGAGGTAGCAAGAATGGAACAAGCGGCTTGAACactggagctcagagagctgttGAGGAAGAACAAACGCATAGAGCCTAACACCTGCCAGACTATTTTACTATTTTAAGTGTTAATATTTCCTGAATTTGTCTATGCCTGGATTTGTCATTCCGGAGTTTTCAGGGGACGATGACTTAAATGAAAACGTGAGAGATTTCTAAAGCATCACGTAATTTCCATGCATGTAATTTGAGGAAAAGTGCTCTCTGCATGAAGCAAACTTTTTGACAACTTGCGAAACCTTACCAAGCAGTGGGTCTACGTGAAGCAGTATTACACGTTTACATTGCCTACGGTGATACACATTTtctactattagtttggaggcaGATTTCAAACGTTATCATTTTCGGTAGGCTAAACAACGCCACAGAATGTGACATCTACTGTCTCGCGACGACGCCGACTGAGCATACCTGCATTGCAAGACTCCAAAGGTTAACTCTGCCTTCATTGCTATGGAGACCACCCAagccctcctcttctttctcctgaGTTTATGTGTCTACAGTTGCCATGCCGACGCTCGGACTGCTCCCAGAGTGCATTTGTCTTACAAAGAGCTGTTGGAGACGCGGACGGCACggcccttctccttctccttcaacaCCAGTGACTACCGCATCCTGCACATGGACCAGGACCAGGGCCGTCTCTACCTGGGCAGCCGGGAGTACCTGGTGGCCCTGGACATGCACAACATCAACAAGGAGCCCCTCATAATTCACTGGCCGGCCACTAcccagaggaaaggagagtgtAGAATGACTGGAAAGGGTGGGCAGGGGGAGTGTGCAAACTTTGTGCGTCTGATTGAACCCTGGAATCGCACACACCTATACACCTGTGGCACAGGGGCCTATAAGCCTATCTGCACCTTCATCAACAGAGGATGGAGAGCAGAGGAGTACCTGTTTAGGCTGGTCCCTGGCTATGGGGACTCAGGGAAAGGGAAATGCTCATATGACCCTCGACAGGAGAACGCTGCGGCCCTTATCAATGGGAATCTGTATGCAGGGGTCCACGTTGACTTCATGGGCACGGATCCGGCCATCTTTAGAACCCTGGGGGACAGACCTGCTGTCAGGACGGAGCAATATGACTCCCGCTGGCTGAATGAGCCAGTGTTTGTTAAGATCCAGCAGATTCCTGACAGCTCCGAGAGGAATGATGATAAACTCTACTTCTTCTTCCGGGAGAAGAGTCTGGATGGTGCCGGGGGGGCCAGCCCCAGTGTCCTGGCCAGGGTGGGCCGAGTATGCCTGAATGATGATGGGGGTCAGAGGTCACTGGTCAACAAGTGGACGACCTTCCTGAAAGCTCGGCTGGTGTGCTCAGTGATAGGGAGCGATGGTGTGGAGACCTATTTCGACGAGCTGAAGGATGTCTTCATTCAGCCAACACAAGACCTTCGCAATCCTGTCGTGTACGCCGTCTTTTCCACTGCGGGTTCTGTGTTTAAGGGCTCAGCCGTGTGTGTCTACTCTATGTCCGACATCCGCAATGTCTTCAATGGCCCTTTCTCACACAAGCACGGACACAACTACCAGTGGACCCCCTACACTGGAAAGATCCCCTACCCTCGCCCTGGAACATGTCCAGGAGGAACGTTTACCCCAGGCCTCCGCTCCACCAAGGAGTTTTCGGATGAGGCTGTGAACTTTGTGAGGGCTCACCCCCTCATGTACCACTCTGTCTACCCCATACACAAGAGGCCTCTGGTGGTGCGAACGGGGGTGGACTACCGCTTCACCTCCATCGTGGTGGACCTGGTGGATGCTGTGGACGGGAGGTATGAGGTGCTCTTCCTGGGCACTGATCGTGGGACAGTCCAAAAGGTGATAGTACTTCCTAAAGACACTAGCACAACGGAAGAGCTCACgttagaggaggtggaggtgttCAGGAATCCAGCTCCTATTAAGACTATGAAGCTATCATCAAAAAGGCAACAGCTGTATGTGTCGTCAGAGATGGGGCTTACCCAGGTGTCCCTGCACAGGTGTGGCGTCTATGGGAAGGCCTGTTCAGACTGCTGCCTGGCCAGAGACCCTTACTGTGCCTGGGATGGGGAGACCTGCTCTGCCTTTAGCCCCTCCACCAAGAGGCGGAGCAGAAGACAGGATATTAAGCATGGAGACCCCTTGCGGCAGTGCAGAGGGTTCAATGCAAAAGTTGAGAAGCGTCTCAGTGAAACAGTGCAGTTTGGGGTGGAGGGGAGTAGCACTTTCCTGGAGTGCCAACCCAGATCTCCACAAGCGACAGTCAAATGGCTCTACCAGAAACCAGATGGCAGGAGGAAAGTGCTGAGccgagacagagaggtgctgaaGACTGGTCACGGCATCCTGCTTAAGTCTTTGAGCCATGCCGACGGGGGGCTGTACAACTGCCTGGCCACCGAGAACAACTTCAAGCACACGGTGGCCCGCGTGGCCCTCCGCATCCTGGACCGGGAGATTGTGGAGGCCCTCACCTCCCCGGACGGTCCCCCGGAGGACCAGAACCCCCATCACCACcgacacccccaccaccaccctccgCCTCCACCACCCCCTCCTCACAACTTGCCCCCGCAGTTCTCCTCCCAGCCGGAGATCCGCCTCATCAACCAGTACTGTCAGTCCTACTGGCAGCAGCTCAACCTCAACCTGCCCACCAAACGCACTAGCAGGAGGCACACTGAGAGCCAGCCAGAGCCAGCCCCGGGAGTCCCTAGCCAGTCCTAaatcccatctccctcactctaCTTCACTGGTACCTGGGCCAGGCCCTGTAGGGCCACTGTGGCCCTGCACAATGGTAACGGGCAGACTCACTCATGTTGttgtgattttgttgttgttgttgttgtttatctcacTCCCATTTAGGGTTAGTCTCCATGAGCCCAATTCTAACTTTAGATCTGTGCACATAGCTCTGTGGTTTCTTGCAAAATTGGTGTTACACACACGGGGTGTTTGGTCACATGAATATTTAGATTAATCTGCAAAACTACCCTATTCCGTCCAAGCTAGTAACCTGGTTAGTAACTAGTAACTAGTTAgagccttgaatgctgattggctgacatccgtggtatatcagaccgtataccacaggtatgacaaaacatttatttttcctgctgtaattatgttggtaaccagtttataatagcaataaggtacctcaGGAGTTTGtcgtatatggccaatataccaaggctaagggCTGAATCCAGGCCCTCTGCGATGCTtagtgcctaagaacagcccttagtcgtggtatattggccatataccacaccccctcatgccttattgTTTAAGTATGTCACATTGTATTGTATCACTCAGTGTAAGAAATTTTAGAAACTGCAGAGGATTTTGTTAGTGTACACAATAGTTGCCTAGCCACCACCATGGTAGTTAGGTGATATAGAGACACTGTATCATATGATTCATTGTAAAATGTGTCACATGTTGTATGGCTGCCTCAACCTCACTTTTTACAATCCATTTGATccactgaatctagttgatgaaaCATGGGCAATTTAATAGTATTACGTATATTATGTTTCCATTCTAAATATTGTTACAATAGAATCCTGCCAATGTCAAGTCAGAAAGAATAAGGCTCAGTTTTGGGTCGTTCTTGAATTGCGGTGGTATCTGGCCTTGGCATTTTggcaaaaatagttttttaatgtttaaaaaatggGTTCTATTCTAAATCAACTAATGTGGAAGTTTAATGACTAATTATTTGTACCATTATGATTACATTGTGCCATCAGTAGGAGTAGTGACAGCAATGACTGTCACACCAATGACTGTCACACCAATGACTGTCACCCCAATGACACATTTAAGGTAATAGTGGATTTTCTTAAATGGAGGCCACAAATGTTCAAATCTAAGGTCACAATGTCATTTCCCTTCTTTTAAATTGAGTAACACCAATGACACTTTCCATTTACACATACTAAATGATCAATGGAATCCTCAAATTTGTGACATACTAAAAGGGTGTGATTAGCTAATAACTTTCTTTAATATATTGGGGAGGCCAATAACAATTTGCCGCTCGAGGGATTGCTAAATGTCCTTCTATAACACCAATGACATAAAACTTAGGGTCACGtaatatttgtaaaaaaataaaaacaataaaaacaattGCCAGGGATGGGCAACGGCAGCTCACTTtcggaaacattttttttttagccctttttctccccaatttcatggtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgggagagacgaaggttgaaagtcatgcgtcctccgatacacaacccaacca

Function

NR:

description
semaphorin-3F-like isoform X2

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566454.2 False 4467 mRNA 0.49 17 53097881 53146173
XM_021566456.2 True 4394 mRNA 0.49 18 53097882 53146173

Neighbor

gene id symbol gene type direction distance location
LOC110492271 ccd22 coding downstream 54406 53036097 ~ 53043475 (-)
LOC110492270 LOC100380632 coding downstream 100229 52963457 ~ 52997652 (-)
LOC110492269 LOC106566831 coding downstream 135941 52950656 ~ 52961940 (-)
LOC110492268 LOC106566834 coding downstream 160192 52933104 ~ 52937689 (-)
LOC110492267 LOC107599000 coding downstream 166191 52923535 ~ 52931690 (-)
foxp3-2 foxp3-2 coding upstream 19331 53165504 ~ 53181656 (-)
LOC110492276 LOC106566827 coding upstream 60098 53206271 ~ 53211578 (-)
LOC110492279 LOC106566931 coding upstream 67159 53213332 ~ 53217735 (-)
LOC110492277 LOC106566826 coding upstream 73200 53219373 ~ 53226719 (-)
LOC110492280 LOC106566823 coding upstream 117628 53263801 ~ 53280585 (-)
G1388265 NA non-coding downstream 357 53094545 ~ 53097524 (-)
G1388249 NA non-coding downstream 24571 53073102 ~ 53073310 (-)
G1388220 NA non-coding downstream 25077 53072571 ~ 53072804 (-)
G1388238 NA non-coding downstream 64186 53033482 ~ 53033695 (-)
G1388234 NA non-coding downstream 66164 53031430 ~ 53031717 (-)
G1388328 NA non-coding upstream 72281 53218454 ~ 53218762 (-)
G1388333 NA non-coding upstream 80983 53227156 ~ 53227471 (-)
G1388351 NA non-coding upstream 108556 53254729 ~ 53254985 (-)
G1388352 NA non-coding upstream 108917 53255090 ~ 53255300 (-)
G1388354 LOC106566824 non-coding upstream 110246 53256419 ~ 53257688 (-)
G1388236 NA other downstream 64960 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 525574 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 669122 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1107886 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 1982816 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 584164 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1398555 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1838645 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2677986 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2918330 56064503 ~ 56064862 (-)

Expression


Co-expression Network