foxp3-2 (foxp3-2)


Basic Information

Item Value
gene id foxp3-2
gene name foxp3-2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53165504 ~ 53181656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564411.2
ATGATTGTAGAGTGTGGGTTCGTAGAATGTGAGAACTGCTCATTCCAGCATTTACACCCCTCACTTGTTGTGGCTGGATTTACGCTGCATGCTAATGCCACATGAGTAATCCCCAGGGATGCCACAGACTGAGAGTGAGAGGTTGAAGAGTGGGCGGCTGAACAGTGgtagacagcagcagcagcgagaTTGGCGGGGTGAACACGGAGAAGAGCCAGGCACACGTACCAAGCCAAATGATTCTGTCTCACCTCGGCTCTATGCTCGTACCTCTGTTACTCAGaTGGGTTTCCCATTGATGATTGGATCTGGAGGTCCACTTATGGCCTCATCTCAGCTCCAGAACATACTGTTACAGCAGTGTTCCAGTGAGGAAGAGGGGAGACCTTTCCTGCAGCGGGTGTTTCGGTGCCCCCAGTTGAGCCAGCACAGACCCTCTGTCCTACGCCAGGCTGTCCTGGCTGCCCACGTACGACCACAGACGGCCGGTTCAGCTCAACCCATATCACCGTGCAAGGTGGAGGTGGACACAGGGAGCCGTGGACAGTCCTCACCCCCACACTCTGAGCACTCTCCTGGGCCCACTCGTCACCCCTCTCCCCTGAGGAGAGCCAATCCTAAGCAGAGCTCCATCATCACCAGGCATAATGAGCCAGGTCACCCAACCCTACGGAGCTCCAGTGCTCTGTTTCTCAACGGACTCTGCTGCTGGCCAGGCTGCGATGCGGTATTTGAAGAATTTCCACGTTTTTTGAAACACCTCCACTCTGACCATGGCCATGGAGACAGAAGCATTGCACAGTGGAGGGTACAACAAGACATGGTGCAATACATGGAGACCCAGcTGACTGTGGAAAAACAGAAACTCTTTGCAATGCAACTCCATCTGCACCTGTCTGAACACAAATCAACTGACATGAAGGCAGGTTCAGATTGGCCCTACAGTCACAACCTGGCACTAGTCCTGCCCCAGTACTCATCCCCGGCCTTGGCAGCAGATGGAGTGCCACGCTGCTCCACTAAAGAGCCAGAGGAGCTGGCACAGCATGAGCAATGGCCCGCTGCCGCTCCCCACCATCTACTCCCAGATCTTGTCCCGAGTGTTGAGTGTTACAAATACAACAACATCCGGCCTCCGTACACCTACGCCTGCCTGATAAGATGGTCTATCCTGGAGTCTCCAGACAAGCAGCGCTCTCTGAATGACATCTACAACTGGTTCACCACAATGTTCTTCTACTTCCGACACAACACGGCCACATGGAAGAACGCTGTCCGTCATAATCTTAGCTTGCACAAGTGTTTTGTGCGAGTGGAGGGAGGCAAGGGGGCTGTCTGGACAGTGGATGAAATGGAATATCAAAGGAGAAAGGGACAAAAATATCACAGGGATCATCATGTGAAATGGTTGGCACCCTTCTCCTTATTCCGTCCAGAAGAACCTTGAACATAGCCATCCCTTCAGTGAATGaaaaactacaggaaaaggaagtcACCAGGACCTATAACTGAATCAGGTATATTATAACAGGGCTGGACCAAAAGCCTCCATATTAGTTCTCCAGGCAGAGGGTTGACCAgtcctggtctacagtatctacagCACCCAGCACCACCTTCTTTATTCAGCAGCAGATGGTGCTATAATACATAGCATAGCCCCGGACTCTTTTGCCTCTCTAGACTGATTATGAAGAAGTGTGCATGGCTGGAATGGCAATATATTCTGCAGCCTTTGAAATAAAAATATACACTTAAAAATGATTTGTCAATAAAACCACAGTGAAAAGGTGAACAATcattttgttttgtagtgttggCTACATATGTGTTACAGCAAGCAAGTACAAATTGGACATTCTGTCAAAAATTCATAAAATAATTAATAAAATTAATATTTGAATGTATTTCTGATTTTGGATCACCTGTTGCAGTCATTACTTTATTCTTTTTTGTGAGAAAACAAAATCAGTTTACCCACAAACCTTTAAATAACAGCTACCCTCCACAATCCCTTTTACATCATTCTCCATAAATCCAGATGAACTCTGTGAAAGACAAAGGGAGAATGTATCTTCCTGCAATGTGAAAGCCCTGTTTAATAATGTTTTCACCTGTGAGTAGCAGCCTGCTGCAGTTCTCTCAGCTCCCTGGTGAGTCTCAGTCAGAAGGTGAAGTATAAATAAAACCCATTCTCCTCGCTCCCACATGCATGATTCCTACAGGACATGTACTCCTCAATGCTCTCACAACCTTTGAGAGCCTCCGCCTTGCTTCAGTGCCTTCAGCCTCTTTTGTTGCTCCTGACACTCCTTCATTGCCATTGAACTTTAGCCACTTAATCTTTACCACAACCTGAACAATATCTCATGTACACAATGGGTCTAACATTCCGCAGTGTCACTGACATCAAGCAAAAATATTGCCTATACATTAGCCCTACGGTTTCTAAACGTCTCCATTGTGTTTTTCATATTTCACAGCTATTAGTCAGTTTTTCCACAGACccagcagttgtccctctgtatGAATCAGTCTTTCCACTAGAAAGGGATATCCAGTTATTTATATCCAGAGCTTTTTTTTCTAAAGGACAAAAGTTATTTATTTGGTGTGCATGGGTAAACATGAGACTGTGCGATATGAGGCTAAAACATAACTCCTTACTCTAGGCACACCTCAGGCTGGACCAGATCCATTTCACAGGCCTGTCATTTAAAGCATTTCCTTTAGGAGAATCCTGTACAGTGTTACATCCTCTAAAACCTCTACTCTTATGGTTCATGCTGGCAGGTGCTTATTATTACCCATTCAACTTCCTCTGTAAACGCTAGCCATCAAAACCCTTGGCAGCATTTACAATGACACAAACAGACTGCCAATACAAGATACAATCGAAAGCTATTTCCTTTTGGGGAAAACACACCATCTCAAAATATAAGGTGTAGTCTTGAAAGTGAGGACAGTTTGAGCTAATCACAGTGTTTTCCTCATCTGCTGAAATAAGCACTTGGACCAGTGTTTTGTTTCTGTGGAGATGTGAAGTATGGAAAGTCCAATATATCCAGATGTTCAGTATGAAGTCCAATATATCCAGATGTGCAGTATGCTCATTCACGAGTAGACCTATAGTAGTTGTCACATTGACCTGATCGAATAAGATCACCTTGGAAGTGTTTTCATGTGAGATTACTTTCATAGGAGATTACATTGCACATCTTGTCGATGTCTGTTTTATGTGCAAtcccaaaatgtaattaaattaaattcaagacTACAGTATCAAGT
>NM_001246332.1
AGCAGGAGATACAGAGTAAGCCCAGGGATGCCACAGACTGAGAGTGAGAGGTTGAAGAGTGGGCGGCTGAACAGTGgtagacagcagcagcagcgagaTTGGCGGGGTGAACACGGAGAAGAGCCAGGCACACGTACCAAGCCAAATGATTCTGTCTCACCTCGGCTCTATGCTCGTACCTCTGTTACTCAGaTGGGTTTCCCATTGATGATTGGATCTGGAGGTCCACTTATGGCCTCATCTCAGCTCCAGAACATACTGTTACAGCAGTGTTCCAGTGAGGAAGAGGGGAGACCTTTCCTGCAGCGGGTGTTTCGGTGCCCCCAGTTGAGCCAGCACAGACCCTCTGTCCTACGCCAGGCTGTCCTGGCTGCCCACGTACGACCACAGACGGCCGGTTCAGCTCAACCCATATCACCGTGCAAGGTGGAGGTGGACACAGGGAGCCGTGGACAGTCCTCACCCCCACACTCTGAGCACTCTCCTGGGCCCACTCGTCACCCCTCTCCCCTGAGGAGAGCCAATCCTAAGCAGAGCTCCATCATCACCAGGCATAATGAGCCAGGTCACCCAACCCTACGGAGCTCCAGTGCTCTGTTTCTCAACGGACTCTGCTGCTGGCCAGGCTGCGATGCGGTATTTGAAGAATTTCCACGTTTTTTGAAACACCTCCACTCTGACCATGGCCATGGAGACAGAAGCATTGCACAGTGGAGGGTACAACAAGACATGGTGCAATACATGGAGACCCAGcTGACTGTGGAAAAACAGAAACTCTTTGCAATGCAACTCCATCTGCACCTGTCTGAACACAAATCAACTGACATGAAGGCAGGTTCAGATTGGCCCTACAGTCACAACCTGGCACTAGTCCTGCCCCAGTACTCATCCCCGGCCTTGGCAGCAGATGGAGTGCCACGCTGCTCCACTAAAGAGCCAGAGGAGCTGGCACAGCATGAGCAATGGCCCGCTGCCGCTCCCCACCATCTACTCCCAGATCTTGTCCCGAGTGTTGAGTGTTACAAATACAACAACATCCGGCCTCCGTACACCTACGCCTGCCTGATAAGATGGTCTATCCTGGAGTCTCCAGACAAGCAGCGCTCTCTGAATGACATCTACAACTGGTTCACCACAATGTTCTTCTACTTCCGACACAACACGGCCACATGGAAGAACGCTGTCCGTCATAATCTTAGCTTGCACAAGTGTTTTGTGCGAGTGGAGGGAGGCAAGGGGGCTGTCTGGACAGTGGATGAAATGGAATATCAAAGGAGAAAGGGACAAAAATATCACAGGGATCATCATGTGAAATGGTTGGCACCCTTCTCCTTATTCCGTCCAGAAGAACCTTGAACATAGCCATCCCTTCAGTGAATGaaaaactacaggaaaaggaagtcACCAGGACCTATAACTGAATCAGGTATATTATAACAGGGCTGGACCAAAAGCCTCCATATTAGTTCTCCAGGCAGAGGGTTGACCAgtcctggtctacagtatctacagCACCCAGCACCACCTTCTTTATTCAGCAGCAGATGGTGCTATAATACATAGCATAGCCCCGGACTCTTTTGCCTCTCTAGACTGATTATGAAGAAGTGTGCATGGCTGGAATGGCAATATATTCTGCAGCCTTTGAAATAAAAATATACACTTAAAAATGATTTGTCAATAAAACCACAGTGAAAAGGTGAACAATcattttgttttgtagtgttggCTACATATGTGTTACAGCAAGCAAGTACAAATTGGACATTCTGTCAAAAATTCATAAAATAATTAATAAAATTAATATTTGAATGTA
>XM_021564410.2
GATTCTGCAaacacacatttcacacatctgtTCCCTCTCACACATTGCGTGAGGCATCTTTAGCATCTCTTCCTCCCGAGAACAGGAAGACAGAAAGTGAGCAGGAGATACAGAGTAAGCCCAGGGATGCCACAGACTGAGAGTGAGAGGTTGAAGAGTGGGCGGCTGAACAGTGgtagacagcagcagcagcgagaTTGGCGGGGTGAACACGGAGAAGAGCCAGGCACACGTACCAAGCCAAATGATTCTGTCTCACCTCGGCTCTATGCTCGTACCTCTGTTACTCAGaTGGGTTTCCCATTGATGATTGGATCTGGAGGTCCACTTATGGCCTCATCTCAGCTCCAGAACATACTGTTACAGCAGTGTTCCAGTGAGGAAGAGGGGAGACCTTTCCTGCAGCGGGTGTTTCGGTGCCCCCAGTTGAGCCAGCACAGACCCTCTGTCCTACGCCAGGCTGTCCTGGCTGCCCACGTACGACCACAGACGGCCGGTTCAGCTCAACCCATATCACCGTGCAAGGTGGAGGTGGACACAGGGAGCCGTGGACAGTCCTCACCCCCACACTCTGAGCACTCTCCTGGGCCCACTCGTCACCCCTCTCCCCTGAGGAGAGCCAATCCTAAGCAGAGCTCCATCATCACCAGGCATAATGAGCCAGGTCACCCAACCCTACGGAGCTCCAGTGCTCTGTTTCTCAACGGACTCTGCTGCTGGCCAGGCTGCGATGCGGTATTTGAAGAATTTCCACGTTTTTTGAAACACCTCCACTCTGACCATGGCCATGGAGACAGAAGCATTGCACAGTGGAGGGTACAACAAGACATGGTGCAATACATGGAGACCCAGcTGACTGTGGAAAAACAGAAACTCTTTGCAATGCAACTCCATCTGCACCTGTCTGAACACAAATCAACTGACATGAAGGCAGGTTCAGATTGGCCCTACAGTCACAACCTGGCACTAGTCCTGCCCCAGTACTCATCCCCGGCCTTGGCAGCAGATGGAGTGCCACGCTGCTCCACTAAAGAGCCAGAGGAGCTGGCACAGCATGAGCAATGGCCCGCTGCCGCTCCCCACCATCTACTCCCAGATCTTGTCCCGAGTGTTGAGTGTTACAAATACAACAACATCCGGCCTCCGTACACCTACGCCTGCCTGATAAGATGGTCTATCCTGGAGTCTCCAGACAAGCAGCGCTCTCTGAATGACATCTACAACTGGTTCACCACAATGTTCTTCTACTTCCGACACAACACGGCCACATGGAAGAACGCTGTCCGTCATAATCTTAGCTTGCACAAGTGTTTTGTGCGAGTGGAGGGAGGCAAGGGGGCTGTCTGGACAGTGGATGAAATGGAATATCAAAGGAGAAAGGGACAAAAATATCACAGGGATCATCATGTGAAATGGTTGGCACCCTTCTCCTTATTCCGTCCAGAAGAACCTTGAACATAGCCATCCCTTCAGTGAATGaaaaactacaggaaaaggaagtcACCAGGACCTATAACTGAATCAGGTATATTATAACAGGGCTGGACCAAAAGCCTCCATATTAGTTCTCCAGGCAGAGGGTTGACCAgtcctggtctacagtatctacagCACCCAGCACCACCTTCTTTATTCAGCAGCAGATGGTGCTATAATACATAGCATAGCCCCGGACTCTTTTGCCTCTCTAGACTGATTATGAAGAAGTGTGCATGGCTGGAATGGCAATATATTCTGCAGCCTTTGAAATAAAAATATACACTTAAAAATGATTTGTCAATAAAACCACAGTGAAAAGGTGAACAATcattttgttttgtagtgttggCTACATATGTGTTACAGCAAGCAAGTACAAATTGGACATTCTGTCAAAAATTCATAAAATAATTAATAAAATTAATATTTGAAT

Function

NR:

description
forkhead box P3-2 protein

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564411.2 False 3288 mRNA 0.45 13 53165504 53176086
NM_001246332.1 False 1816 mRNA 0.50 13 53166885 53180903
XM_021564410.2 True 1912 mRNA 0.49 14 53166888 53181656

Neighbor

gene id symbol gene type direction distance location
LOC110492274 LOC106566829 coding downstream 19331 53097881 ~ 53146173 (-)
LOC110492271 ccd22 coding downstream 122029 53036097 ~ 53043475 (-)
LOC110492270 LOC100380632 coding downstream 167852 52963457 ~ 52997652 (-)
LOC110492269 LOC106566831 coding downstream 203564 52950656 ~ 52961940 (-)
LOC110492268 LOC106566834 coding downstream 227815 52933104 ~ 52937689 (-)
LOC110492276 LOC106566827 coding upstream 24615 53206271 ~ 53211578 (-)
LOC110492279 LOC106566931 coding upstream 31676 53213332 ~ 53217735 (-)
LOC110492277 LOC106566826 coding upstream 37717 53219373 ~ 53226719 (-)
LOC110492280 LOC106566823 coding upstream 82145 53263801 ~ 53280585 (-)
LOC110492284 LOC106566930 coding upstream 108350 53290006 ~ 53297286 (-)
G1388265 NA non-coding downstream 67980 53094545 ~ 53097524 (-)
G1388249 NA non-coding downstream 92194 53073102 ~ 53073310 (-)
G1388220 NA non-coding downstream 92700 53072571 ~ 53072804 (-)
G1388238 NA non-coding downstream 131809 53033482 ~ 53033695 (-)
G1388234 NA non-coding downstream 133787 53031430 ~ 53031717 (-)
G1388328 NA non-coding upstream 36798 53218454 ~ 53218762 (-)
G1388333 NA non-coding upstream 45500 53227156 ~ 53227471 (-)
G1388351 NA non-coding upstream 73073 53254729 ~ 53254985 (-)
G1388352 NA non-coding upstream 73434 53255090 ~ 53255300 (-)
G1388354 LOC106566824 non-coding upstream 74763 53256419 ~ 53257688 (-)
G1388236 NA other downstream 132583 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 593197 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 736745 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1175509 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 2050439 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 548681 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1363072 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1803162 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2642503 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2882847 56064503 ~ 56064862 (-)

Expression


Co-expression Network