LOC110492277 (LOC106566826)


Basic Information

Item Value
gene id LOC110492277
gene name LOC106566826
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53219373 ~ 53226719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947230.1
ATGTTGGCTGCATGTTAGCGAACCACTCATTAAAGTTTAAAGTTAGCTCGCGGAGGTTGGCGTTTCTTAAACTTTCGTCCGGATATCGAGATTTGGCACAAATATTCTGCAATCTAGCTAGCTATCCAGCTATCCGTTCACTCTTGCTGCCTCTGCCTTGTACCATTGTCTCGAGCAACAGTGAGAGCCAGGCAGTTGAGGCTACACCATGGAGTTCAGCAGGATAGAGTTCTTCCAGGAGCTAGGGGAGAGCTGTGTGCTCCCTACGGCACAGCAGGGAGTGGAACAGGTCTGGCAGCTACTGCTCCTCTGCCTGCTCTGTCGACTCCTCTGTAGGCTGGTAGGTCTCTCATCCTCTGTGAAACACTTGGGCTCAGTGTCAGCGGGTCTATATGCCCTCTACCTGTTCTTTGAGCAGTCCATGGTGTGGGTGTTAATGCTCAGTATGCTCTGCTACACGGTCCTGTTCCTCAACCGCCACTCCAGCAGCCGAGGAATCTTCCTCTCTGCCACTATCCTCATCTATCTACTCATGGGaGAGCTGCATATGATTGACACAGTGACCTGGCATAAAATGAGAGGTTCCCAGATGGTGGTGGCAATGAAGGCCATTTCTCTGGCCTTTGACCTGGACAGAGGCACTGTGCTCGCTGTGCCCAACCCTCTGGAGTTCACAGGCTACATTCTCTTTGTGGGCACTGTCATCTTTGGACCCTGGATTAGCTACTCAAGCTACAAAGAGGCCATTGAGAGCCGTAAACTAAGTTGGTCCTGGCTCCAGAAGTTTTCAATCAGCTGGGTGAAATGCCAGGTATGCTTGGTGATATCCAACTGCATCGCCCCATACCTCTTCCCTTACTTCATTCCAATCCACGGGAGCAGAGGACTGCGCACGTGGCTCCATGCGTATGAGAATGCTGTATCCTTCCACTTCAGTAACTACTTTGTGGGCCACCTCAGCGAAAGTACTACTGTGCTGGCAGGGGCAGGTTTCACTGAAGACAAAGACAATGTCAAATGGGATCTGAAAGTGGTTAAGCCTCTGAATGTGGAGTTGCCCAGGTCCATGGTGCTGGTGGTGACCTCCTGGAACATCCCCATGTCTCGCTGGCTCAACATATATGTTTTCAAAAGTGCTTTGAAACTTGGCACATTTTCTTCCATCATTGTGACTTACACAGCCAGTGCCCTACTACATGGCCTCAGCTTCCATCTTGGGGCCGTGCTGCTGTCTCTGGGCTTCATCACCTACGTGGAACATGTTCTGAGGAAGAGGCTGGCAGCCATCTTTAGTGCCTGTATCCTGTCCAAACAGTGTCCCAACAATTGCCATCATCAGCAGAAGAAGGAGCTGTGGGTGTATGGCATCAACCTGGCCTTCAGTGCCATGGCCATCTTCCACCTGACATACCTGGGCTCCCTGTTTGATGCTGAAGTAGACAACTTGGCTGCAGAGGAGGGTTATGTGGCCAACCACACCATTCAGAAGTGGTCAGAGTTGAACTGGGCCAGCCACTGGCTGGTGTTCGGCAGCTGGCTCTTCTACCGCCTCATTCAGTAATCTCATTTGGTGAAGGTCTGTACT
>XM_036947231.1
AATGTTGGCTGCATGTTAGCGAACCACTCATTAAAGTTTAAAGTTAGCTCGCGGAGGTTGGCGTTTCTTAAACTTTCGTCCGGATATCGAGATTTGGCACAAATATTCTGCAATCTAGCTAGCTATCCAGCTATCCGTTCACTCTTGCTGCCTCTGCCTTGTACCATTGTCTCGAGCAACAGTGAGAGCCAGGCAGTTGAGGCTACACCATGGAGTTCAGCAGGATAGAGTTCTTCCAGGAGCTAGGGGAGAGCTGTGTGCTCCCTACGGCACAGCAGGGAGTGGAACAGGTCTGGCAGCTACTGCTCCTCTGCCTGCTCTGTCGACTCCTCTGTAGGCTGGGTCTCTCATCCTCTGTGAAACACTTGGGCTCAGTGTCAGCGGGTCTATATGCCCTCTACCTGTTCTTTGAGCAGTCCATGGTGTGGGTGTTAATGCTCAGTATGCTCTGCTACACGGTCCTGTTCCTCAACCGCCACTCCAGCAGCCGAGGAATCTTCCTCTCTGCCACTATCCTCATCTATCTACTCATGGGaGAGCTGCATATGATTGACACAGTGACCTGGCATAAAATGAGAGGTTCCCAGATGGTGGTGGCAATGAAGGCCATTTCTCTGGCCTTTGACCTGGACAGAGGCACTGTGCTCGCTGTGCCCAACCCTCTGGAGTTCACAGGCTACATTCTCTTTGTGGGCACTGTCATCTTTGGACCCTGGATTAGCTACTCAAGCTACAAAGAGGCCATTGAGAGCCGTAAACTAAGTTGGTCCTGGCTCCAGAAGTTTTCAATCAGCTGGGTGAAATGCCAGGTATGCTTGGTGATATCCAACTGCATCGCCCCATACCTCTTCCCTTACTTCATTCCAATCCACGGGAGCAGAGGACTGCGCACGTGGCTCCATGCGTATGAGAATGCTGTATCCTTCCACTTCAGTAACTACTTTGTGGGCCACCTCAGCGAAAGTACTACTGTGCTGGCAGGGGCAGGTTTCACTGAAGACAAAGACAATGTCAAATGGGATCTGAAAGTGGTTAAGCCTCTGAATGTGGAGTTGCCCAGGTCCATGGTGCTGGTGGTGACCTCCTGGAACATCCCCATGTCTCGCTGGCTCAACATATATGTTTTCAAAAGTGCTTTGAAACTTGGCACATTTTCTTCCATCATTGTGACTTACACAGCCAGTGCCCTACTACATGGCCTCAGCTTCCATCTTGGGGCCGTGCTGCTGTCTCTGGGCTTCATCACCTACGTGGAACATGTTCTGAGGAAGAGGCTGGCAGCCATCTTTAGTGCCTGTATCCTGTCCAAACAGTGTCCCAACAATTGCCATCATCAGCAGAAGAAGGAGCTGTGGGTGTATGGCATCAACCTGGCCTTCAGTGCCATGGCCATCTTCCACCTGACATACCTGGGCTCCCTGTTTGATGCTGAAGTAGACAACTTGGCTGCAGAGGAGGGTTATGTGGCCAACCACACCATTCAGAAGTGGTCAGAGTTGAACTGGGCCAGCCACTGGCTGGTGTTCGGCAGCTGGCTCTTCTACCGCCTCATTCAGTAATCTCATTTGGTGAAGGTCTGTACT
>XM_021566462.2
ACACAGAGTGAGCTCAGAGAATGGTGTCCCCTGGTGGACAGTGTTGCCAGTGATTATGAAGAGTCGAAATACGAATGTCTTTCAAGTGAGAGCCAGGCAGTTGAGGCTACACCATGGAGTTCAGCAGGATAGAGTTCTTCCAGGAGCTAGGGGAGAGCTGTGTGCTCCCTACGGCACAGCAGGGAGTGGAACAGGTCTGGCAGCTACTGCTCCTCTGCCTGCTCTGTCGACTCCTCTGTAGGCTGGTAGGTCTCTCATCCTCTGTGAAACACTTGGGCTCAGTGTCAGCGGGTCTATATGCCCTCTACCTGTTCTTTGAGCAGTCCATGGTGTGGGTGTTAATGCTCAGTATGCTCTGCTACACGGTCCTGTTCCTCAACCGCCACTCCAGCAGCCGAGGAATCTTCCTCTCTGCCACTATCCTCATCTATCTACTCATGGGaGAGCTGCATATGATTGACACAGTGACCTGGCATAAAATGAGAGGTTCCCAGATGGTGGTGGCAATGAAGGCCATTTCTCTGGCCTTTGACCTGGACAGAGGCACTGTGCTCGCTGTGCCCAACCCTCTGGAGTTCACAGGCTACATTCTCTTTGTGGGCACTGTCATCTTTGGACCCTGGATTAGCTACTCAAGCTACAAAGAGGCCATTGAGAGCCGTAAACTAAGTTGGTCCTGGCTCCAGAAGTTTTCAATCAGCTGGGTGAAATGCCAGGTATGCTTGGTGATATCCAACTGCATCGCCCCATACCTCTTCCCTTACTTCATTCCAATCCACGGGAGCAGAGGACTGCGCACGTGGCTCCATGCGTATGAGAATGCTGTATCCTTCCACTTCAGTAACTACTTTGTGGGCCACCTCAGCGAAAGTACTACTGTGCTGGCAGGGGCAGGTTTCACTGAAGACAAAGACAATGTCAAATGGGATCTGAAAGTGGTTAAGCCTCTGAATGTGGAGTTGCCCAGGTCCATGGTGCTGGTGGTGACCTCCTGGAACATCCCCATGTCTCGCTGGCTCAACATATATGTTTTCAAAAGTGCTTTGAAACTTGGCACATTTTCTTCCATCATTGTGACTTACACAGCCAGTGCCCTACTACATGGCCTCAGCTTCCATCTTGGGGCCGTGCTGCTGTCTCTGGGCTTCATCACCTACGTGGAACATGTTCTGAGGAAGAGGCTGGCAGCCATCTTTAGTGCCTGTATCCTGTCCAAACAGTGTCCCAACAATTGCCATCATCAGCAGAAGAAGGAGCTGTGGGTGTATGGCATCAACCTGGCCTTCAGTGCCATGGCCATCTTCCACCTGACATACCTGGGCTCCCTGTTTGATGCTGAAGTAGACAACTTGGCTGCAGAGGAGGGTTATGTGGCCAACCACACCATTCAGAAGTGGTCAGAGTTGAACTGGGCCAGCCACTGGCTGGTGTTCGGCAGCTGGCTCTTCTACCGCCTCATTCAGTAATCTCATTTGGTGAAGGTCTGTACT
>XM_021566460.2
GCTTGCATTCAGTATGCAAACACACAGAGTGAGCTCAGAGAATGGTGTCCCCTGGTGGACAGTGTTGCCAGTGATTATGAAGAGTCGAAATACGAATGTCTTTCAAGTAGGAGACGAGAGGACGCGGACATTGGCATAGTACAGGACAAGTAGGACACGAATCAGACAAGTGAAAACTATTTCAGTGAGAGCCAGGCAGTTGAGGCTACACCATGGAGTTCAGCAGGATAGAGTTCTTCCAGGAGCTAGGGGAGAGCTGTGTGCTCCCTACGGCACAGCAGGGAGTGGAACAGGTCTGGCAGCTACTGCTCCTCTGCCTGCTCTGTCGACTCCTCTGTAGGCTGGTAGGTCTCTCATCCTCTGTGAAACACTTGGGCTCAGTGTCAGCGGGTCTATATGCCCTCTACCTGTTCTTTGAGCAGTCCATGGTGTGGGTGTTAATGCTCAGTATGCTCTGCTACACGGTCCTGTTCCTCAACCGCCACTCCAGCAGCCGAGGAATCTTCCTCTCTGCCACTATCCTCATCTATCTACTCATGGGaGAGCTGCATATGATTGACACAGTGACCTGGCATAAAATGAGAGGTTCCCAGATGGTGGTGGCAATGAAGGCCATTTCTCTGGCCTTTGACCTGGACAGAGGCACTGTGCTCGCTGTGCCCAACCCTCTGGAGTTCACAGGCTACATTCTCTTTGTGGGCACTGTCATCTTTGGACCCTGGATTAGCTACTCAAGCTACAAAGAGGCCATTGAGAGCCGTAAACTAAGTTGGTCCTGGCTCCAGAAGTTTTCAATCAGCTGGGTGAAATGCCAGGTATGCTTGGTGATATCCAACTGCATCGCCCCATACCTCTTCCCTTACTTCATTCCAATCCACGGGAGCAGAGGACTGCGCACGTGGCTCCATGCGTATGAGAATGCTGTATCCTTCCACTTCAGTAACTACTTTGTGGGCCACCTCAGCGAAAGTACTACTGTGCTGGCAGGGGCAGGTTTCACTGAAGACAAAGACAATGTCAAATGGGATCTGAAAGTGGTTAAGCCTCTGAATGTGGAGTTGCCCAGGTCCATGGTGCTGGTGGTGACCTCCTGGAACATCCCCATGTCTCGCTGGCTCAACATATATGTTTTCAAAAGTGCTTTGAAACTTGGCACATTTTCTTCCATCATTGTGACTTACACAGCCAGTGCCCTACTACATGGCCTCAGCTTCCATCTTGGGGCCGTGCTGCTGTCTCTGGGCTTCATCACCTACGTGGAACATGTTCTGAGGAAGAGGCTGGCAGCCATCTTTAGTGCCTGTATCCTGTCCAAACAGTGTCCCAACAATTGCCATCATCAGCAGAAGAAGGAGCTGTGGGTGTATGGCATCAACCTGGCCTTCAGTGCCATGGCCATCTTCCACCTGACATACCTGGGCTCCCTGTTTGATGCTGAAGTAGACAACTTGGCTGCAGAGGAGGGTTATGTGGCCAACCACACCATTCAGAAGTGGTCAGAGTTGAACTGGGCCAGCCACTGGCTGGTGTTCGGCAGCTGGCTCTTCTACCGCCTCATTCAGTAATCTCATTTGGTGAAGGTCTGTACT
>XM_021566463.2
GCTTGCATTCAGTATGCAAACACACAGAGTGAGCTCAGAGAATGGTGTCCCCTGGTGGACAGTGTTGCCAGTGATTATGAAGAGTCGAAATACGAATGTCTTTCAAGTAGGAGACGAGAGGACGCGGACATTGGCATAGTACAGGACAAGTAGGACACGAATCAGACAAGTGAAAACTATTTCAGTGAGAGCCAGGCAGTTGAGGCTACACCATGGAGTTCAGCAGGATAGAGTTCTTCCAGGAGCTAGGGGAGAGCTGTGTGCTCCCTACGGCACAGCAGGGAGTGGAACAGGTCTGGCAGCTACTGCTCCTCTGCCTGCTCTGTCGACTCCTCTGTAGGCTGGGTCTCTCATCCTCTGTGAAACACTTGGGCTCAGTGTCAGCGGGTCTATATGCCCTCTACCTGTTCTTTGAGCAGTCCATGGTGTGGGTGTTAATGCTCAGTATGCTCTGCTACACGGTCCTGTTCCTCAACCGCCACTCCAGCAGCCGAGGAATCTTCCTCTCTGCCACTATCCTCATCTATCTACTCATGGGaGAGCTGCATATGATTGACACAGTGACCTGGCATAAAATGAGAGGTTCCCAGATGGTGGTGGCAATGAAGGCCATTTCTCTGGCCTTTGACCTGGACAGAGGCACTGTGCTCGCTGTGCCCAACCCTCTGGAGTTCACAGGCTACATTCTCTTTGTGGGCACTGTCATCTTTGGACCCTGGATTAGCTACTCAAGCTACAAAGAGGCCATTGAGAGCCGTAAACTAAGTTGGTCCTGGCTCCAGAAGTTTTCAATCAGCTGGGTGAAATGCCAGGTATGCTTGGTGATATCCAACTGCATCGCCCCATACCTCTTCCCTTACTTCATTCCAATCCACGGGAGCAGAGGACTGCGCACGTGGCTCCATGCGTATGAGAATGCTGTATCCTTCCACTTCAGTAACTACTTTGTGGGCCACCTCAGCGAAAGTACTACTGTGCTGGCAGGGGCAGGTTTCACTGAAGACAAAGACAATGTCAAATGGGATCTGAAAGTGGTTAAGCCTCTGAATGTGGAGTTGCCCAGGTCCATGGTGCTGGTGGTGACCTCCTGGAACATCCCCATGTCTCGCTGGCTCAACATATATGTTTTCAAAAGTGCTTTGAAACTTGGCACATTTTCTTCCATCATTGTGACTTACACAGCCAGTGCCCTACTACATGGCCTCAGCTTCCATCTTGGGGCCGTGCTGCTGTCTCTGGGCTTCATCACCTACGTGGAACATGTTCTGAGGAAGAGGCTGGCAGCCATCTTTAGTGCCTGTATCCTGTCCAAACAGTGTCCCAACAATTGCCATCATCAGCAGAAGAAGGAGCTGTGGGTGTATGGCATCAACCTGGCCTTCAGTGCCATGGCCATCTTCCACCTGACATACCTGGGCTCCCTGTTTGATGCTGAAGTAGACAACTTGGCTGCAGAGGAGGGTTATGTGGCCAACCACACCATTCAGAAGTGGTCAGAGTTGAACTGGGCCAGCCACTGGCTGGTGTTCGGCAGCTGGCTCTTCTACCGCCTCATTCAGTAATCTCATTTGGTGAAGGTCTGTACT
>XM_021566461.2
TGTGGATTCCGCTTGCATTCAGTATGCAAACACACAGAGTGAGCTCAGAGAATGGTGTCCCCTGGTGGACAGTGTTGCCAGTGATTATGAAGAGTCGAAATACGAATGTCTTTCAAGGAGACGAGAGGACGCGGACATTGGCATAGTACAGGACAAGTAGGACACGAATCAGACAAGTGAAAACTATTTCAGTGAGAGCCAGGCAGTTGAGGCTACACCATGGAGTTCAGCAGGATAGAGTTCTTCCAGGAGCTAGGGGAGAGCTGTGTGCTCCCTACGGCACAGCAGGGAGTGGAACAGGTCTGGCAGCTACTGCTCCTCTGCCTGCTCTGTCGACTCCTCTGTAGGCTGGTAGGTCTCTCATCCTCTGTGAAACACTTGGGCTCAGTGTCAGCGGGTCTATATGCCCTCTACCTGTTCTTTGAGCAGTCCATGGTGTGGGTGTTAATGCTCAGTATGCTCTGCTACACGGTCCTGTTCCTCAACCGCCACTCCAGCAGCCGAGGAATCTTCCTCTCTGCCACTATCCTCATCTATCTACTCATGGGaGAGCTGCATATGATTGACACAGTGACCTGGCATAAAATGAGAGGTTCCCAGATGGTGGTGGCAATGAAGGCCATTTCTCTGGCCTTTGACCTGGACAGAGGCACTGTGCTCGCTGTGCCCAACCCTCTGGAGTTCACAGGCTACATTCTCTTTGTGGGCACTGTCATCTTTGGACCCTGGATTAGCTACTCAAGCTACAAAGAGGCCATTGAGAGCCGTAAACTAAGTTGGTCCTGGCTCCAGAAGTTTTCAATCAGCTGGGTGAAATGCCAGGTATGCTTGGTGATATCCAACTGCATCGCCCCATACCTCTTCCCTTACTTCATTCCAATCCACGGGAGCAGAGGACTGCGCACGTGGCTCCATGCGTATGAGAATGCTGTATCCTTCCACTTCAGTAACTACTTTGTGGGCCACCTCAGCGAAAGTACTACTGTGCTGGCAGGGGCAGGTTTCACTGAAGACAAAGACAATGTCAAATGGGATCTGAAAGTGGTTAAGCCTCTGAATGTGGAGTTGCCCAGGTCCATGGTGCTGGTGGTGACCTCCTGGAACATCCCCATGTCTCGCTGGCTCAACATATATGTTTTCAAAAGTGCTTTGAAACTTGGCACATTTTCTTCCATCATTGTGACTTACACAGCCAGTGCCCTACTACATGGCCTCAGCTTCCATCTTGGGGCCGTGCTGCTGTCTCTGGGCTTCATCACCTACGTGGAACATGTTCTGAGGAAGAGGCTGGCAGCCATCTTTAGTGCCTGTATCCTGTCCAAACAGTGTCCCAACAATTGCCATCATCAGCAGAAGAAGGAGCTGTGGGTGTATGGCATCAACCTGGCCTTCAGTGCCATGGCCATCTTCCACCTGACATACCTGGGCTCCCTGTTTGATGCTGAAGTAGACAACTTGGCTGCAGAGGAGGGTTATGTGGCCAACCACACCATTCAGAAGTGGTCAGAGTTGAACTGGGCCAGCCACTGGCTGGTGTTCGGCAGCTGGCTCTTCTACCGCCTCATTCAGTAATCTCATTTGGTGAAGGTCTGTACT

Function

NR:

description
protein-serine O-palmitoleoyltransferase porcupine-like isoform X1

GO: NA

KEGG:

id description
K00181 PORCN; O-palmitoleoyl transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947230.1 False 1585 mRNA 0.51 13 53219373 53226383
XM_036947231.1 False 1583 mRNA 0.51 13 53219373 53226384
XM_021566462.2 False 1490 mRNA 0.52 13 53219373 53226688
XM_021566460.2 False 1589 mRNA 0.51 14 53219373 53226709
XM_021566463.2 False 1586 mRNA 0.51 14 53219373 53226709
XM_021566461.2 True 1596 mRNA 0.51 14 53219373 53226719

Neighbor

gene id symbol gene type direction distance location
LOC110492279 LOC106566931 coding downstream 1638 53213332 ~ 53217735 (-)
LOC110492276 LOC106566827 coding downstream 7795 53206271 ~ 53211578 (-)
foxp3-2 foxp3-2 coding downstream 37717 53165504 ~ 53181656 (-)
LOC110492274 LOC106566829 coding downstream 73200 53097881 ~ 53146173 (-)
LOC110492271 ccd22 coding downstream 175898 53036097 ~ 53043475 (-)
LOC110492280 LOC106566823 coding upstream 37082 53263801 ~ 53280585 (-)
LOC110492284 LOC106566930 coding upstream 63287 53290006 ~ 53297286 (-)
LOC110492285 tpx2 coding upstream 76622 53303341 ~ 53313558 (-)
LOC110492286 LOC106566818 coding upstream 97605 53324324 ~ 53376992 (-)
LOC110491099 LOC106572329 coding upstream 212273 53438992 ~ 53440261 (-)
G1388328 NA non-coding downstream 611 53218454 ~ 53218762 (-)
G1388265 NA non-coding downstream 121849 53094545 ~ 53097524 (-)
G1388249 NA non-coding downstream 146063 53073102 ~ 53073310 (-)
G1388220 NA non-coding downstream 146569 53072571 ~ 53072804 (-)
G1388238 NA non-coding downstream 185678 53033482 ~ 53033695 (-)
G1388333 NA non-coding upstream 437 53227156 ~ 53227471 (-)
G1388351 NA non-coding upstream 28010 53254729 ~ 53254985 (-)
G1388352 NA non-coding upstream 28371 53255090 ~ 53255300 (-)
G1388354 LOC106566824 non-coding upstream 29700 53256419 ~ 53257688 (-)
G1388236 NA other downstream 186452 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 647066 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 790614 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1229378 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 2104308 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 503618 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1318009 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1758099 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2597440 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2837784 56064503 ~ 56064862 (-)

Expression


Co-expression Network