LOC110492286 (LOC106566818)


Basic Information

Item Value
gene id LOC110492286
gene name LOC106566818
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53324324 ~ 53376992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566480.2
TCCCACTCCTCGGAATCGCTCGCTCCGAAGCTGCCGACAGTCAATAACATTGAAAGCTGATTGAATAATATTAACCGGTTTATGTCCAGTAAGAACGTATCAATGGGAGCCTATAACGAACGGTAGGTATACTCGCGTATCATAAAATAGATGAGTAAAGACCGCATAATGAAATTGTAATAATGAATTGTGGATTTtcaatgttttttaaaaactttaatATCAGTATTTACAAAGGCTAACGACGGTGTAGTAAGCACTGGATTTTAGTTTCCCCACTGGAGATAAAAGGATACTAGAAGACGTCTGCATAATTGTGTCCTGTCTTCTGCGAGGTATCCCGACAACCATCTATACTTCGTTGATCAATCACCATGGAAGGCGAAGGAAAGGGGTTGACGCTCCAGCTGATGATGGCAGTGGGAACAGCTGTGATTGGCTCGCTGCAGTTTGGCTACAACACAGGGGTCATCAATGCTCCCCAAAAGATCATCGAAGGCTTCCTGAATGACACGTGGAACAGCAGGTACTCTGAGCCCATCCCTACTACTTCCCTAACCACCCTGTGGTCCATATCCGTGGCCATCTTCTCTGTCGGGGGCATTTTCGGCTCCTTCTCCGTGGGCCTCTTTGTCAACCGCCTGGGCAGGAGAAACTCGATGCTTATTGCCAACGTGCTGGCGTTCATCTCCGCCGGGTTCATGGGCTTCTCCAAGCTGGCGGCGTCGTGGGAGATGCTGATTATCGGGCGCTTCATTGTGGGGCTCTACTCCGGCCTGTCCACTGGCTTCGTGCCCATGTACGTGGGAGAGATTGCTCCCACCTCGCTCCGCGGGGCGCTGGGCACTCTGCACCAGCTGGGCATCGTCCTTGGCATCCTCATGGCACAGGTGTTTGGGATCGAGTCGATCATGGGGAACTCCACTCTGTGGCCCTTCCTACTGGGCTTCACATTCATCCCAGCCATGCTGCAGTGTATCCTGTTACCCTTCTGCCCCGAGAGCCCCCGCTTCCTCCTAATCAACCGCAACGAGGAGCTCAAGGCCAGAGAAGTGCTGGAGAAGCTGCGAGGCACTGAGGAGGTGGGCGCCGACATGCAGGAGATGAAGGAGGAGGCCAGGCagatgatgaaggagaagaaGGTGACCATCCTGGAGCTGTTCCGCTCGCCACTCTACCGCCAGCCCATCTTCATCGCCGTCATGCTCCAGCTCTCCCAGCAGTTGTCTGGCATCAACGCTGTTTTCTACTACTCCACCAGGATCTTTGAGAAGGCGGGAGTCTCTCAGCCAGTCTATGCTACGATTGGTGCCGGAGTGGTCAATACAGCCTTCACTGTTGTGTCTctATTCGTCGTGGAGCGTGCTGGGCGAAGATCCCTTCACCTCACTGGGTTGCTGGGGATGGCATTCTCAGCTGTCCTGATGACAATCGCTATGGCACTACTGGACCAGCTGCCATGGATGTCCTACGTCAGCATCGTAGCCATCTTTAGCTTTGTGGCCTTCTTTGAGATCGGCCCGGGCCCCATCCCCTGGTTCATTGTGGCTGAGCTCTTCAGCCAAGGTCCTCGGCCCTCTGCCTTTGCCGTTGCTGGATTCTCCAACTGGTCGGCTAACTTCATAGTGGGCATGACCTTCCAATACGTTGAGcAACTGTGTGGCCCCTACGTCTTCATCATCTTCACTGTGCTACTGCTGGGCTTCTTCATCTTCACTTATTTCAAGGTGCCCGAAACCAAGGGACGGTCGTTTGACGAGATCTCAGCCGGCTTCCGCCATGAGGCCGGACAGTCAGGGGAAAAGTATGCTCCTGATGAGATGAACAGCCTTGGGGGAGCCGACTCTCAACTTTAAGATCTCCGACAACACCCCCAACCTCCTTCAATACTACTGATAGACTGGGTGGGCAACATACGCCTGGGCATTTCTAGTTTAGGGACGAGTGCCActcctataggccttcagtgtcccacctgtggtaaactgaTGACTGCAGTATGCATGGGGTTCCAGGAGGGCGCGATGAGAGACTGCAAATTCACAATAGAGATGTGTAGAGATCGCAATGTTGTATGTTTCATTATGGTGTCTGTGgcagcatgggcagcaccattgaggccaactccattttaaagtagtacattttcttcttttgatgtttaaaaaaaagtgtaatgCTATTGTGATTTACCACCACCTGCAGTGCTGTAGTCTTGAAACAAATCTGGGGTGTCATTCATTTATTATGTCAACTAGATGGCTGTGATATAGCTTAAAAGCCCGTTACAAACTAGGCAAAACAATTTGAAGACAATGCTCTGATCATtgagagaatctcaattgcattgtCCTCGCGTCCTCTCGTCTCCTTTTCAAAATCCATTGGAAGAGGTCAGAGGCGAGGGACCTCTGGCTttttcatccaatgggttttgagaaggaagagaggagagagaacgcgaggcgtatgcaattgagattctcccattgGCCTTCCCCACCCAgctgactactttaaaatggtggaagacctcaatggcaatgtccatgcaaAAAATGGTTATTTCCAAGTAGCgatctctatacatctctatagTATTCACAGGAAGTAGAGGCTCTCCTTGTTGACCCTTGTGTAATATTGGCAGATATCCATATCAGATACGGAAGAGAAAGCGAGACATCTCACAGGCAAATTCTTTCATCTCCGATCGGGTGGTGCAAACGGGGGAGAGGGGAATAAGTAGACCAGAGCCAGCTGTTATAAAAGGGTGTTTATGAGACATCTTCATTATCTTGTTGGTTTAAATCCTCATCAGCCTGAATGGGAAAATAGCTCTTTATCCTCTTTTGGTCTCTTCCTGCAGCTTAAAGGGGCTGACTTGGTTGCTATTAAGATAACAAAGTGAAACACTGAATTAAACCATGCTTTCCATTCCACTTATCCAATCCTTAATATCACCACAGACTATGCAGTTAGTGAGACACATTCTCAATTCCAACTGTTCATCCACAATTTACTTCAGCAAACTCTGACAATAAAAACAAAGACCCTAGACCAATTTAATTGACAAAAGCCAAGACCAAGCCGAGATATTGTAAAATGCATGTCAATATTTGACTTATTTGTGTCTTTGCTCTTCTGTTACTGAGGAGCAATATGAACAATCTTTGCTAAAGCATTCTATTTACGCCATGAGAAATTAATTAATTATGAAGCCAATCCTAATCATGGAAGTTTAATTATATATCCCTCAATTATTTTCTTTATTAGGTGAAGTGTTATATTGTATCTTAATACTAGcaacagtggtgtagtggagggtaaacacaagTAAACACAGTTTACCCAGCTTTTTTTGCCCAACAGTTTACCATGGTCTTGTCAAATTGTTGAACTAGATCACATTTTAAAATGATTGAATCTGTTTTTCTCTCAACACAATTGATTTACAGTATATAAAATAGAAACTTGTAAATTATATTGCATAATTAGATAATGTCAACTAACCAGGCCTATCAAGTGTATTATTGAACTATATTTCTAATATTTCTGTATCTGCCCTTTGATCTGTTTAACGAATTGTAGCTGTCGTTGATCCTCAATGTTACTTTTGGAATATGCATTTGTGTTCACCACcccaatataaactcagcaaaaaaagaaacgtcctctcactgtcaattgcATTTatattcagcaaacttaacatatgtaaatatttgtatgaacataagattcaacaactgagacaaactgaacaagttccacagacatgtgactaacagaaatggaatgtgtcCATGAACAAAGGGGGTGTCAAAAggaccagtcagtatctggtgtggccaccagctgcattaagtactgcagtgtatctcctcctcatggactgcagcagatttgccagtttttgctgtgagatgttaccccactcttccactaagGAACCTGGAAGTTCCaagacatttctgtggggaatggcc
>XM_021566481.2
CTCCTCGGAATCGCTCGCTCCGAAGCTGCCGACAGTCAATAACATTGAAAGCTGATTGAATAATATTAACCGGTTTATGTCCAGTAAGAACGTATCAATGGGAGCCTATAACGAACGTATTTACAAAGGCTAACGACGGTGTAGTAAGCACTGGATTTTAGTTTCCCCACTGGAGATAAAAGGATACTAGAAGACGTCTGCATAATTGTGTCCTGTCTTCTGCGAGGTATCCCGACAACCATCTATACTTCGTTGATCAATCACCATGGAAGGCGAAGGAAAGGGGTTGACGCTCCAGCTGATGATGGCAGTGGGAACAGCTGTGATTGGCTCGCTGCAGTTTGGCTACAACACAGGGGTCATCAATGCTCCCCAAAAGATCATCGAAGGCTTCCTGAATGACACGTGGAACAGCAGGTACTCTGAGCCCATCCCTACTACTTCCCTAACCACCCTGTGGTCCATATCCGTGGCCATCTTCTCTGTCGGGGGCATTTTCGGCTCCTTCTCCGTGGGCCTCTTTGTCAACCGCCTGGGCAGGAGAAACTCGATGCTTATTGCCAACGTGCTGGCGTTCATCTCCGCCGGGTTCATGGGCTTCTCCAAGCTGGCGGCGTCGTGGGAGATGCTGATTATCGGGCGCTTCATTGTGGGGCTCTACTCCGGCCTGTCCACTGGCTTCGTGCCCATGTACGTGGGAGAGATTGCTCCCACCTCGCTCCGCGGGGCGCTGGGCACTCTGCACCAGCTGGGCATCGTCCTTGGCATCCTCATGGCACAGGTGTTTGGGATCGAGTCGATCATGGGGAACTCCACTCTGTGGCCCTTCCTACTGGGCTTCACATTCATCCCAGCCATGCTGCAGTGTATCCTGTTACCCTTCTGCCCCGAGAGCCCCCGCTTCCTCCTAATCAACCGCAACGAGGAGCTCAAGGCCAGAGAAGTGCTGGAGAAGCTGCGAGGCACTGAGGAGGTGGGCGCCGACATGCAGGAGATGAAGGAGGAGGCCAGGCagatgatgaaggagaagaaGGTGACCATCCTGGAGCTGTTCCGCTCGCCACTCTACCGCCAGCCCATCTTCATCGCCGTCATGCTCCAGCTCTCCCAGCAGTTGTCTGGCATCAACGCTGTTTTCTACTACTCCACCAGGATCTTTGAGAAGGCGGGAGTCTCTCAGCCAGTCTATGCTACGATTGGTGCCGGAGTGGTCAATACAGCCTTCACTGTTGTGTCTctATTCGTCGTGGAGCGTGCTGGGCGAAGATCCCTTCACCTCACTGGGTTGCTGGGGATGGCATTCTCAGCTGTCCTGATGACAATCGCTATGGCACTACTGGACCAGCTGCCATGGATGTCCTACGTCAGCATCGTAGCCATCTTTAGCTTTGTGGCCTTCTTTGAGATCGGCCCGGGCCCCATCCCCTGGTTCATTGTGGCTGAGCTCTTCAGCCAAGGTCCTCGGCCCTCTGCCTTTGCCGTTGCTGGATTCTCCAACTGGTCGGCTAACTTCATAGTGGGCATGACCTTCCAATACGTTGAGcAACTGTGTGGCCCCTACGTCTTCATCATCTTCACTGTGCTACTGCTGGGCTTCTTCATCTTCACTTATTTCAAGGTGCCCGAAACCAAGGGACGGTCGTTTGACGAGATCTCAGCCGGCTTCCGCCATGAGGCCGGACAGTCAGGGGAAAAGTATGCTCCTGATGAGATGAACAGCCTTGGGGGAGCCGACTCTCAACTTTAA
>XM_036947246.1
TCCCACTCCTCGGAATCGCTCGCTCCGAAGCTGCCGACAGTCAATAACATTGAAAGCTGATTGAATAATATTAACCGGTTTATGTCCAGTAAGAACGTATCAATGGGAGCCTATAACGAACGGTAGGTATACTCGCGTATCATAAAATAGATGAGTAAAGACCGCATAATGAAATTGTAATAATGAATTGTGGATTTtcaatgttttttaaaaactttaatATCAGTATTTACAAAGGCTAACGACGGTGTAGTAAGCACTGGATTTTAGTTTCCCCACTGGAGATAAAAGGATACTAGAAGACGTCTGCATAATTGTGTCCTGTCTTCTGCGAGGTATCCCGACAACCATCTATACTTCGTTGATCAATCACCATGGAAGGCGAAGGAAAGGGGTTGACGCTCCAGCTGATGATGGCAGTGGGAACAGCTGTGATTGGCTCGCTGCAGTTTGGCTACAACACAGGGGTCATCAATGCTCCCCAAAAGGAGCCCTGCCAGGTCAATCGAAGGTGATACATCACATACATGTAGGATCTTTGACTGACGTGGTGAGACTCGCTGATCATCGAAGGCTTCCTGAATGACACGTGGAACAGCAGGTACTCTGAGCCCATCCCTACTACTTCCCTAACCACCCTGTGGTCCATATCCGTGGCCATCTTCTCTGTCGGGGGCATTTTCGGCTCCTTCTCCGTGGGCCTCTTTGTCAACCGCCTGGGCAGGAGAAACTCGATGCTTATTGCCAACGTGCTGGCGTTCATCTCCGCCGGGTTCATGGGCTTCTCCAAGCTGGCGGCGTCGTGGGAGATGCTGATTATCGGGCGCTTCATTGTGGGGCTCTACTCCGGCCTGTCCACTGGCTTCGTGCCCATGTACGTGGGAGAGATTGCTCCCACCTCGCTCCGCGGGGCGCTGGGCACTCTGCACCAGCTGGGCATCGTCCTTGGCATCCTCATGGCACAGGTGTTTGGGATCGAGTCGATCATGGGGAACTCCACTCTGTGGCCCTTCCTACTGGGCTTCACATTCATCCCAGCCATGCTGCAGTGTATCCTGTTACCCTTCTGCCCCGAGAGCCCCCGCTTCCTCCTAATCAACCGCAACGAGGAGCTCAAGGCCAGAGAAGTGCTGGAGAAGCTGCGAGGCACTGAGGAGGTGGGCGCCGACATGCAGGAGATGAAGGAGGAGGCCAGGCagatgatgaaggagaagaaGGTGACCATCCTGGAGCTGTTCCGCTCGCCACTCTACCGCCAGCCCATCTTCATCGCCGTCATGCTCCAGCTCTCCCAGCAGTTGTCTGGCATCAACGCTGTTTTCTACTACTCCACCAGGATCTTTGAGAAGGCGGGAGTCTCTCAGCCAGTCTATGCTACGATTGGTGCCGGAGTGGTCAATACAGCCTTCACTGTTGTGTCTctATTCGTCGTGGAGCGTGCTGGGCGAAGATCCCTTCACCTCACTGGGTTGCTGGGGATGGCATTCTCAGCTGTCCTGATGACAATCGCTATGGCACTACTGGACCAGCTGCCATGGATGTCCTACGTCAGCATCGTAGCCATCTTTAGCTTTGTGGCCTTCTTTGAGATCGGCCCGGGCCCCATCCCCTGGTTCATTGTGGCTGAGCTCTTCAGCCAAGGTCCTCGGCCCTCTGCCTTTGCCGTTGCTGGATTCTCCAACTGGTCGGCTAACTTCATAGTGGGCATGACCTTCCAATACGTTGAGcAACTGTGTGGCCCCTACGTCTTCATCATCTTCACTGTGCTACTGCTGGGCTTCTTCATCTTCACTTATTTCAAGGTGCCCGAAACCAAGGGACGGTCGTTTGACGAGATCTCAGCCGGCTTCCGCCATGAGGCCGGACAGTCAGGGGAAAAGTATGCTCCTGATGAGATGAACAGCCTTGGGGGAGCCGACTCTCAACTTTAA
>XM_021566483.2
GTATCAGTGGAGTGAGCTGTTCTGAAACCAGATTGTAGTTCATAAAGAAGTTTGTGCTCAAGAAGGTATCCCTCAAGTTGATTAAAATCAAATCTCTCAATAACTTTGGATAAGGTGCTGAGGATTGACACAGGGGTTGACGCTCCAGCTGATGATGGCAGTGGGAACAGCTGTGATTGGCTCGCTGCAGTTTGGCTACAACACAGGGGTCATCAATGCTCCCCAAAAGATCATCGAAGGCTTCCTGAATGACACGTGGAACAGCAGGTACTCTGAGCCCATCCCTACTACTTCCCTAACCACCCTGTGGTCCATATCCGTGGCCATCTTCTCTGTCGGGGGCATTTTCGGCTCCTTCTCCGTGGGCCTCTTTGTCAACCGCCTGGGCAGGAGAAACTCGATGCTTATTGCCAACGTGCTGGCGTTCATCTCCGCCGGGTTCATGGGCTTCTCCAAGCTGGCGGCGTCGTGGGAGATGCTGATTATCGGGCGCTTCATTGTGGGGCTCTACTCCGGCCTGTCCACTGGCTTCGTGCCCATGTACGTGGGAGAGATTGCTCCCACCTCGCTCCGCGGGGCGCTGGGCACTCTGCACCAGCTGGGCATCGTCCTTGGCATCCTCATGGCACAGGTGTTTGGGATCGAGTCGATCATGGGGAACTCCACTCTGTGGCCCTTCCTACTGGGCTTCACATTCATCCCAGCCATGCTGCAGTGTATCCTGTTACCCTTCTGCCCCGAGAGCCCCCGCTTCCTCCTAATCAACCGCAACGAGGAGCTCAAGGCCAGAGAAGTGCTGGAGAAGCTGCGAGGCACTGAGGAGGTGGGCGCCGACATGCAGGAGATGAAGGAGGAGGCCAGGCagatgatgaaggagaagaaGGTGACCATCCTGGAGCTGTTCCGCTCGCCACTCTACCGCCAGCCCATCTTCATCGCCGTCATGCTCCAGCTCTCCCAGCAGTTGTCTGGCATCAACGCTGTTTTCTACTACTCCACCAGGATCTTTGAGAAGGCGGGAGTCTCTCAGCCAGTCTATGCTACGATTGGTGCCGGAGTGGTCAATACAGCCTTCACTGTTGTGTCTctATTCGTCGTGGAGCGTGCTGGGCGAAGATCCCTTCACCTCACTGGGTTGCTGGGGATGGCATTCTCAGCTGTCCTGATGACAATCGCTATGGCACTACTGGACCAGCTGCCATGGATGTCCTACGTCAGCATCGTAGCCATCTTTAGCTTTGTGGCCTTCTTTGAGATCGGCCCGGGCCCCATCCCCTGGTTCATTGTGGCTGAGCTCTTCAGCCAAGGTCCTCGGCCCTCTGCCTTTGCCGTTGCTGGATTCTCCAACTGGTCGGCTAACTTCATAGTGGGCATGACCTTCCAATACGTTGAGcAACTGTGTGGCCCCTACGTCTTCATCATCTTCACTGTGCTACTGCTGGGCTTCTTCATCTTCACTTATTTCAAGGTGCCCGAAACCAAGGGACGGTCGTTTGACGAGATCTCAGCCGGCTTCCGCCATGAGGCCGGACAGTCAGGGGAAAAGTATGCTCCTGATGAGATGAACAGCCTTGGGGGAGCCGACTCTCAACTTTAA

Function

NR:

description
solute carrier family 2, facilitated glucose transporter member 1-like isoform X1

GO: NA

KEGG:

id description
K07299 SLC2A1, GLUT1; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566480.2 False 3989 mRNA 0.46 10 53324324 53349459
XM_021566481.2 False 1747 mRNA 0.55 11 53326457 53349454
XM_036947246.1 False 1931 mRNA 0.53 11 53326457 53349459
XM_021566483.2 True 1597 mRNA 0.55 10 53326457 53376992

Neighbor

gene id symbol gene type direction distance location
LOC110492285 tpx2 coding downstream 10766 53303341 ~ 53313558 (-)
LOC110492284 LOC106566930 coding downstream 27038 53290006 ~ 53297286 (-)
LOC110492280 LOC106566823 coding downstream 43739 53263801 ~ 53280585 (-)
LOC110492277 LOC106566826 coding downstream 97605 53219373 ~ 53226719 (-)
LOC110492279 LOC106566931 coding downstream 106589 53213332 ~ 53217735 (-)
LOC110491099 LOC106572329 coding upstream 62000 53438992 ~ 53440261 (-)
LOC110492292 LOC106566814 coding upstream 230418 53607410 ~ 53617096 (-)
LOC110492291 LOC106566813 coding upstream 240541 53617533 ~ 53633437 (-)
LOC110492293 LOC106566812 coding upstream 262878 53639870 ~ 53666843 (-)
LOC110492295 LOC102779685 coding upstream 301318 53678310 ~ 53681048 (-)
G1388381 NA non-coding downstream 7910 53315825 ~ 53316414 (-)
G1388378 NA non-coding downstream 21564 53302428 ~ 53302760 (-)
G1388377 NA non-coding downstream 22116 53302003 ~ 53302208 (-)
G1388375 NA non-coding downstream 24347 53299324 ~ 53299977 (-)
G1388364 NA non-coding upstream 22147 53399139 ~ 53406183 (-)
G1388406 NA non-coding upstream 29910 53406902 ~ 53407175 (-)
G1388407 NA non-coding upstream 31201 53408193 ~ 53408472 (-)
G1388373 NA non-coding upstream 43186 53420178 ~ 53420392 (-)
G1388415 NA non-coding upstream 51131 53428123 ~ 53428663 (-)
G1388236 NA other downstream 291403 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 752017 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 895565 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1334329 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 2209259 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 353345 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1167736 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1607826 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2447167 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2687511 56064503 ~ 56064862 (-)

Expression


Co-expression Network