LOC110492292 (LOC106566814)


Basic Information

Item Value
gene id LOC110492292
gene name LOC106566814
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53607410 ~ 53617096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566494.2
GCATGCTTGCGGTTGTTGCTCCCGAGCAGACGGAAAGACCTTCGCGGAGAGGTGGTATTGATCACCGGGGGTGGACGGGGCATCGGTCGGCATTTGGGGAAAGAGTTTGCAAAACATGGAGCAAAAAAGGCACACAAACACAGGTGTTTCCTCAGTCCCTGTGCTTTACAATGGGGGCGATGACAGGTTGGGTGGATGGCTCCGTGGAACTACAATGATGTTGCCTTTTTAACCTCAACTCTAGCTCCTCTGGGTCCCCAGTGACTGTTCGATAAAGTTCACTGACAGGGTAGTGGAATGCACAGTTCAGATTGATCCTGTGGGGCCGCACTGAGAAGTGTCTGATGGAGACCTGCAAGGAGATCTCTCTCACCACCGGAGCCGAGTGCCATTACTTCCTGTGTGACGTGGCCAATCGGGAGGAGGTGTACAAGCAGGCCAAGGTGGTCCGAGAGAAGGTGGGCGACGTCACCATTCTAGTGAATAACGCTGCAGTGGTTCATGGGAAGAGTCTGATGGCCAGTGACGATGATGCTCTGATGAAGACTCAACACATCAACACGCTGGGCCAGTTCTGGACCACCAAAGCCTTCCTACCCCGCATGCTAGAGCTTTGCCATGGCCATGTGGTGTGTATCAACTCCATCCTGTCCCTGTCCTCCATCCCGGGGGCCATAGATTATTGCACCTCCAAGGCCTCGTCCCTGGCGTTCATGGAGAGCCTCACCCTGGGCCTGCTGGACTGCCCTGGGGTCGGCTGCACCACCGTGCTCCCCTTCCACACCAACACTGACATGTTCCAGGGCATGAGAGTCAGGTTCCCTCAGCTCTTCCCCCCGCTAAATCCTGAGCTGGTGGCCCAGCGGACGGTGGACGCAGTCCGGACCAACACTCCGTTCATCTACTTACCTTGGACCATGCATGCTCTCGTTATTCTCAAGAGCTTCCTGCCTCAGGCAGCTCTGGAGGAGATCCAGCGTTTCTCAGGGTGCTACACCTGCATGGACACCTTCAAGGGACGTACATAAGAACGGAGAGGCTACACACGAGTAGTGAGCATCAGAAGCACGAACATTGTGGCTTGGCACCAAGAACCGCACAACAGCTTCCTATCAAATGAGTGGAAGTATCTCCAAGACAACAGAGGCCGTAGGAACTATGGGTACTTGGGGTCACAGTGCCCTGATGGTGCAAGAAGAGATTTGCTGTGGAATCTTGAATTGAATAGTGGTGTTTGGGTTGCCAGATTGGCTGGCCCCAAACTGATTTATATGCTGCTTGGAGTTGGTTGGTGTTTCCTCCAAAGCCTTTCAGTTTGGGATCATGGACTAAGCACCAGATGGACTGGTATTCAGAACTGATCAAGCCTTACCACTGTGGTAAACTTCCCATCTGTCTTACTAATGATACCATTACTAATTTGAAAATGCACAGAGATTAGGTTGCATGGATTGTACTCAGTATGTTAACAAATGAGTAACTTCTGGTAGTTGCATTTCATTTGCGACTTTTTGGAGTTTTTGTGTTAAGAAAAAACTGGTGTTAAATCTGTATTCAATAGTCATATTTTTGGGATTTACCACTTGACAGTATTGTGAATAtgctgttttgtgtgtgtgtgtgtgcgcagatccagtcttttgatttttttttttattgtctgCTAAAGACTCCAGCCTTCTCATGGTCAACATTCCTGTGCTGCAGCCCTGCCAATTGTGAGCTCATTGTTCGTTTAAGGGTTGTCATAACACTCTCTGCTCCATAGGAAAGTTTACCGGAGAAGTTCCTTCCATTTGAAGAACCATAGAAATGGTTTCAGGGGGACACGGGCAATACAATCAACTTTCTCAGATTCATCATTCATTTGACACATGGGATAACATTCATTTGATCCTATACTGTGCCTACTGAACACACTTGTTGGTCCCCTCTTTATCTGTCCCTCTCGGCTCTGTCTTTTAATCTTCTTTAGTATGGTCATCCATCTGGAGCACAGACAGCTGGAGAATCATACCTGGCCTGGTGGGCTCTATTGTCTAATATCAGTTTTCCCACATTATGTTGAACTTCGGGTTATCTAGGGTTACGGTGGTTATGGTTAGCATCTTAAGTAGGTGTAGGTATTGAACATTAAACTTGCTGTATCTTGATCAAAGAATTCCTGAATGGGAGAAAGTTTTGATAAAACAAACTCACTTAGACACATTTAGTGCACAAAAGCAAGGGAGGCACAATCATACTACTCTGGACAATAAAATATAACAGTGATTATTTGTTTTAGACCAGAAATGTTTCAGAATGTAATCCT
>XM_021566493.2
ATTGTTTTTCTGCGACTTTCTCTATCAGCTTTCTTGGAAGAAGGAAAAGCGCTACAGCCGCTCATGCACTGTCAAGTCAGAGGGGCTATTGGCTACTCTCCAACATTCAAACTGTCAATCAAGATGAAAGGGCTATATAAAGCCATAGTACCGGTAGTTAGACAGTTAGAACAGTCTGAGCATATAGGCAGTTGTAGACGCGAGATCCAGTCGGTCTGTTGCTTGACGCACGCACTGTGTTGGCATTGGCGCGCCATGTCAGCTATTATCACTGCATTTTCGTACTGTTCCTATTATGACAAAGACGTATGTGTGTCGTACCTCTGATATTAAAACTGGATTGATAAGAATTTTGTCGTAGAGGGGTAGTGGTATGGAGAACACTTAGACATCCATCTGGCATGAGCCACGCACTTTGGGAAGGTGTGCATTGTCTATGTGGCTACTCCAATTTTATTCTCAGCAAAAGGCATCTTTATACCTAACAACGTCGTAATGGATTTAAATAATTTCGGAAACGCGGTGCTTTTCACGTTCCACATCATCTTCTGCATATTGAAAGCATGCTTGCGGTTGTTGCTCCCGAGCAGACGGAAAGACCTTCGCGGAGAGGTGGTATTGATCACCGGGGGTGGACGGGGCATCGGTCGGCATTTGGGGAAAGAGTTTGCAAAACATGGAGCAAAAAAGTTGATCCTGTGGGGCCGCACTGAGAAGTGTCTGATGGAGACCTGCAAGGAGATCTCTCTCACCACCGGAGCCGAGTGCCATTACTTCCTGTGTGACGTGGCCAATCGGGAGGAGGTGTACAAGCAGGCCAAGGTGGTCCGAGAGAAGGTGGGCGACGTCACCATTCTAGTGAATAACGCTGCAGTGGTTCATGGGAAGAGTCTGATGGCCAGTGACGATGATGCTCTGATGAAGACTCAACACATCAACACGCTGGGCCAGTTCTGGACCACCAAAGCCTTCCTACCCCGCATGCTAGAGCTTTGCCATGGCCATGTGGTGTGTATCAACTCCATCCTGTCCCTGTCCTCCATCCCGGGGGCCATAGATTATTGCACCTCCAAGGCCTCGTCCCTGGCGTTCATGGAGAGCCTCACCCTGGGCCTGCTGGACTGCCCTGGGGTCGGCTGCACCACCGTGCTCCCCTTCCACACCAACACTGACATGTTCCAGGGCATGAGAGTCAGGTTCCCTCAGCTCTTCCCCCCGCTAAATCCTGAGCTGGTGGCCCAGCGGACGGTGGACGCAGTCCGGACCAACACTCCGTTCATCTACTTACCTTGGACCATGCATGCTCTCGTTATTCTCAAGAGCTTCCTGCCTCAGGCAGCTCTGGAGGAGATCCAGCGTTTCTCAGGGTGCTACACCTGCATGGACACCTTCAAGGGACGTACATAAGAACGGAGAGGCTACACACGAGTAGTGAGCATCAGAAGCACGAACATTGTGGCTTGGCACCAAGAACCGCACAACAGCTTCCTATCAAATGAGTGGAAGTATCTCCAAGACAACAGAGGCCGTAGGAACTATGGGTACTTGGGGTCACAGTGCCCTGATGGTGCAAGAAGAGATTTGCTGTGGAATCTTGAATTGAATAGTGGTGTTTGGGTTGCCAGATTGGCTGGCCCCAAACTGATTTATATGCTGCTTGGAGTTGGTTGGTGTTTCCTCCAAAGCCTTTCAGTTTGGGATCATGGACTAAGCACCAGATGGACTGGTATTCAGAACTGATCAAGCCTTACCACTGTGGTAAACTTCCCATCTGTCTTACTAATGATACCATTACTAATTTGAAAATGCACAGAGATTAGGTTGCATGGATTGTACTCAGTATGTTAACAAATGAGTAACTTCTGGTAGTTGCATTTCATTTGCGACTTTTTGGAGTTTTTGTGTTAAGAAAAAACTGGTGTTAAATCTGTATTCAATAGTCATATTTTTGGGATTTACCACTTGACAGTATTGTGAATAtgctgttttgtgtgtgtgtgtgtgcgcagatccagtcttttgatttttttttttattgtctgCTAAAGACTCCAGCCTTCTCATGGTCAACATTCCTGTGCTGCAGCCCTGCCAATTGTGAGCTCATTGTTCGTTTAAGGGTTGTCATAACACTCTCTGCTCCATAGGAAAGTTTACCGGAGAAGTTCCTTCCATTTGAAGAACCATAGAAATGGTTTCAGGGGGACACGGGCAATACAATCAACTTTCTCAGATTCATCATTCATTTGACACATGGGATAACATTCATTTGATCCTATACTGTGCCTACTGAACACACTTGTTGGTCCCCTCTTTATCTGTCCCTCTCGGCTCTGTCTTTTAATCTTCTTTAGTATGGTCATCCATCTGGAGCACAGACAGCTGGAGAATCATACCTGGCCTGGTGGGCTCTATTGTCTAATATCAGTTTTCCCACATTATGTTGAACTTCGGGTTATCTAGGGTTACGGTGGTTATGGTTAGCATCTTAAGTAGGTGTAGGTATTGAACATTAAACTTGCTGTATCTTGATCAAAGAATTCCTGAATGGGAGAAAGTTTTGATAAAACAAACTCACTTAGACACATTTAGTGCACAAAAGCAAGGGAGGCACAATCATACTACTCTGGACAATAAAATATAACAGTGATTATTTGTTTTAGACCAGAAATGTTTCAGAATGTAATCCT

Function

NR:

description
short-chain dehydrogenase/reductase 3-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566494.2 False 2311 mRNA 0.48 7 53607410 53616535
XM_021566493.2 True 2690 mRNA 0.46 6 53607410 53617096

Neighbor

gene id symbol gene type direction distance location
LOC110491099 LOC106572329 coding downstream 167149 53438992 ~ 53440261 (-)
LOC110492286 LOC106566818 coding downstream 230418 53324324 ~ 53376992 (-)
LOC110492285 tpx2 coding downstream 293852 53303341 ~ 53313558 (-)
LOC110492284 LOC106566930 coding downstream 310124 53290006 ~ 53297286 (-)
LOC110492280 LOC106566823 coding downstream 326825 53263801 ~ 53280585 (-)
LOC110492291 LOC106566813 coding upstream 437 53617533 ~ 53633437 (-)
LOC110492293 LOC106566812 coding upstream 22774 53639870 ~ 53666843 (-)
LOC110492295 LOC102779685 coding upstream 61214 53678310 ~ 53681048 (-)
LOC110492296 LOC106566808 coding upstream 72076 53689172 ~ 53695764 (-)
LOC110491101 LOC106566920 coding upstream 94774 53711870 ~ 53727973 (-)
G1388480 vps13d non-coding downstream 7645 53598077 ~ 53599765 (-)
G1388521 NA non-coding downstream 38235 53566411 ~ 53569175 (-)
G1388482 NA non-coding downstream 87539 53519349 ~ 53519871 (-)
G1388481 NA non-coding downstream 88150 53518199 ~ 53519260 (-)
G1388453 NA non-coding downstream 105273 53501766 ~ 53502137 (-)
G1388532 LOC106566810 non-coding upstream 52622 53669718 ~ 53671690 (-)
G1388578 NA non-coding upstream 66822 53683918 ~ 53684208 (-)
G1388583 NA non-coding upstream 85904 53703000 ~ 53703266 (-)
G1388597 NA non-coding upstream 103587 53720683 ~ 53721152 (-)
G1388236 NA other downstream 574489 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 1035103 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 1178651 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1617415 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 2492345 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 113241 53730164 ~ 53757019 (-)
G1389763 NA other upstream 927632 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1367722 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2207063 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2447407 56064503 ~ 56064862 (-)

Expression


Co-expression Network