Item | Value |
---|---|
gene id | LOC110492299 |
gene name | LOC106566805 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048580.1 |
NCBI id | CM023234.2 |
chromosome length | 78541548 |
location | 53730164 ~ 53757019 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
intermediate filament family orphan 2-like |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036947263.1 | False | 3899 | mRNA | 0.46 | 10 | 53730164 | 53757010 |
XM_036947267.1 | False | 3060 | mRNA | 0.45 | 9 | 53730164 | 53757010 |
XM_036947266.1 | False | 3855 | mRNA | 0.46 | 9 | 53730164 | 53757011 |
XM_036947262.1 | False | 3937 | mRNA | 0.46 | 10 | 53730164 | 53757015 |
XM_036947264.1 | False | 3892 | mRNA | 0.46 | 9 | 53730164 | 53757015 |
XM_036947265.1 | False | 3896 | mRNA | 0.46 | 10 | 53730164 | 53757019 |
TU1585952 | True | 2032 | TUCP | 0.41 | 3 | 53730337 | 53732915 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110491101 | LOC106566920 | coding | downstream | 2191 | 53711870 ~ 53727973 (-) |
LOC110492296 | LOC106566808 | coding | downstream | 34400 | 53689172 ~ 53695764 (-) |
LOC110492295 | LOC102779685 | coding | downstream | 49116 | 53678310 ~ 53681048 (-) |
LOC110492293 | LOC106566812 | coding | downstream | 63321 | 53639870 ~ 53666843 (-) |
LOC110492291 | LOC106566813 | coding | downstream | 96727 | 53617533 ~ 53633437 (-) |
LOC110492300 | LOC106566804 | coding | upstream | 1341 | 53758360 ~ 53776201 (-) |
LOC110491103 | LOC106566803 | coding | upstream | 19859 | 53776875 ~ 53919347 (-) |
commd7 | comd7 | coding | upstream | 199892 | 53956911 ~ 53968135 (-) |
LOC110491105 | LOC106566796 | coding | upstream | 410361 | 54163558 ~ 54236936 (-) |
LOC110492306 | LOC106566792 | coding | upstream | 523326 | 54280345 ~ 54456016 (-) |
G1388597 | NA | non-coding | downstream | 9012 | 53720683 ~ 53721152 (-) |
G1388583 | NA | non-coding | downstream | 26898 | 53703000 ~ 53703266 (-) |
G1388578 | NA | non-coding | downstream | 45956 | 53683918 ~ 53684208 (-) |
G1388532 | LOC106566810 | non-coding | downstream | 58474 | 53669718 ~ 53671690 (-) |
G1389286 | NA | non-coding | upstream | 37994 | 53795013 ~ 53795218 (-) |
G1389288 | NA | non-coding | upstream | 39792 | 53796811 ~ 53797106 (-) |
G1389289 | NA | non-coding | upstream | 42994 | 53800013 ~ 53800428 (-) |
G1389290 | NA | non-coding | upstream | 43957 | 53800976 ~ 53801229 (-) |
G1388236 | NA | other | downstream | 697243 | 53031932 ~ 53032921 (-) |
LOC110492250 | LOC106566852 | other | downstream | 1157857 | 52566433 ~ 52577143 (-) |
spen | LOC106566857 | other | downstream | 1301405 | 52379551 ~ 52428869 (-) |
LOC110492226 | LOC106572002 | other | downstream | 1740169 | 51978399 ~ 51990025 (-) |
dffb | LOC106566885 | other | downstream | 2615099 | 51113403 ~ 51117850 (-) |
G1389763 | NA | other | upstream | 787709 | 54544728 ~ 54545243 (-) |
G1390030 | ifrd2 | other | upstream | 1227799 | 54984818 ~ 54986263 (-) |
LOC110492352 | nua4l | other | upstream | 2067140 | 55824155 ~ 55826646 (-) |
G1391586 | NA | other | upstream | 2307484 | 56064503 ~ 56064862 (-) |
G1391624 | NA | other | upstream | 2468395 | 56225414 ~ 56226061 (-) |
G1385888 | NA | other | downstream | 2601689 | 51090645 ~ 51128648 (-) |