Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110492320 |
| gene name | LOC106566780 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 54769016 ~ 54821566 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| cadherin EGF LAG seven-pass G-type receptor 3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036947316.1 | False | 12441 | mRNA | 0.58 | 35 | 54769016 | 54820524 |
| TU1586576 | False | 429 | TUCP | 0.58 | 2 | 54781700 | 54782348 |
| TU1586573 | True | 1736 | lncRNA | 0.40 | 2 | 54819574 | 54821566 |
54,720,000
54,730,000
54,740,000
54,750,000
54,760,000
54,770,000
54,780,000
54,790,000
54,800,000
54,810,000
54,820,000
54,830,000
NC_048580.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492319 | LOC106566782 | coding | upstream | 11079 | 54731748 ~ 54757937 (+) |
| LOC110492316 | LOC106566785 | coding | upstream | 56863 | 54688886 ~ 54712153 (+) |
| LOC110492318 | LOC106566786 | coding | upstream | 81540 | 54676780 ~ 54687476 (+) |
| LOC110492314 | NA | coding | upstream | 96259 | 54667603 ~ 54672757 (+) |
| LOC110492313 | LOC106566790 | coding | upstream | 134349 | 54624109 ~ 54634667 (+) |
| slc26a6 | LOC106566781 | coding | downstream | 43271 | 54863795 ~ 54879029 (+) |
| LOC110492321 | LOC106566779 | coding | downstream | 73835 | 54894359 ~ 54914650 (+) |
| LOC110492322 | LOC106566777 | coding | downstream | 104572 | 54925096 ~ 54943877 (+) |
| hyal3 | LOC106566776 | coding | downstream | 124199 | 54944723 ~ 54955727 (+) |
| LOC110492326 | nat6 | coding | downstream | 127555 | 54948079 ~ 54949763 (+) |
| G1389060 | NA | non-coding | upstream | 192678 | 54576127 ~ 54576338 (+) |
| G1389056 | NA | non-coding | upstream | 196974 | 54571822 ~ 54572042 (+) |
| G1389053 | NA | non-coding | upstream | 201682 | 54566874 ~ 54567334 (+) |
| G1389017 | NA | non-coding | upstream | 212929 | 54554717 ~ 54556087 (+) |
| G1389224 | NA | non-coding | downstream | 71596 | 54892120 ~ 54892468 (+) |
| G1389225 | NA | non-coding | downstream | 72104 | 54892628 ~ 54892868 (+) |
| G1389227 | NA | non-coding | downstream | 72736 | 54893260 ~ 54893471 (+) |
| G1389236 | NA | non-coding | downstream | 95176 | 54915700 ~ 54916031 (+) |
| G1389238 | NA | non-coding | downstream | 96040 | 54916564 ~ 54916789 (+) |
| G1388919 | LOC106566792 | other | upstream | 462108 | 54306450 ~ 54306908 (+) |
| G1388917 | LOC106566792 | other | upstream | 466858 | 54299174 ~ 54302158 (+) |
| G1388806 | NA | other | upstream | 539155 | 54163086 ~ 54229861 (+) |
| LOC110492303 | LOC106566801 | other | upstream | 719274 | 54045935 ~ 54061849 (+) |
| G1387575 | NA | other | upstream | 1442425 | 53321781 ~ 53326591 (+) |
| G1390376 | actr8 | other | downstream | 530676 | 55351200 ~ 55351729 (+) |
| G1390386 | LOC106566684 | other | downstream | 543944 | 55364468 ~ 55381360 (+) |
| G1390473 | NA | other | downstream | 708069 | 55528593 ~ 55529648 (+) |
| G1390508 | NA | other | downstream | 808170 | 55628694 ~ 55632838 (+) |
| G1390527 | NA | other | downstream | 819498 | 55640022 ~ 55640299 (+) |
| G1389170 | NA | non-coding | upstream | 30813 | 54788549 ~ 54788761 (+) |
| G1389161 | NA | non-coding | upstream | 40945 | 54778391 ~ 54778629 (+) |
| LOC110492320 | LOC106566780 | other | upstream | 37226 | 54769016 ~ 54821566 (+) |
| G1389175 | NA | non-coding | downstream | 18328 | 54800676 ~ 54881330 (+) |
