si:dkey-20d21.12 (LOC106566776)


Basic Information

Item Value
gene id si:dkey-20d21.12
gene name LOC106566776
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54946478 ~ 54957989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947320.1
GTAGGGGCAAGCAGCAGGGAGCAAGGCAGGGATTGggggcacagagacacagacacagaacacTGGGTCTGGACTCACTTCCGTGCGATAAGGCAGTTATTCACCCTGGACTATATTCAGAAGGTTAATTAATACAGTTGTGGATGTATATTTTGTTTGATCCTATGACACTGGACAACCTTTTTCATCACTTGTTGTTGACACGTATTGGGAACGTATTGACAGCAGCTTTCCTTTCTTGAGGAGACGCACACGGAGACGTACTGTACGTGAATTCTCCTCAGATACACATACTATACGTGTATCTTTCAGAAGggATTATGGCGAAACAACCTCCATCCCCTACCACTCCAGTATTTTTTACCCGGATCAGTGATCGGGATCTGACTGAGATCGAGCTACATTCCGTGGAGTCCATCAACGACCTGCACCGCACCCACCCAGAGCACAACCACAAAGgcAGCAGACGACCTCCCCTTCCTCCTGCTCCCTCCACCAATGGAAACCTCCATCTCCGGGACAGACCAGTTGTCTATCAGACAGGGCATCCAATGAGAAGCCGATGGCAGAGCACGCTCCGAGACCTGTTGATGCCCACCTCGTTTCGATACACCATGGGGTGTGCAGTGACATCACTGACGCTGTTGACGCTACTTCTTATCTTCTATTTCTTAGCAGGGCAGCACTCTCCGGTCCCTAACGGAagcagtgagggagagacaggctGTGGCCCTAGAGGTCTCCCAGCTCATCCAGGAGCTGCAGGCGCTGCGCCACAACCTCACAGCCATCACGGGAGGATCCTGAGGAGCAGAGGTCACGGAGAGGAACACCCTTCACCCCTGGACCCTGAAATCCCCGTCCTAGTGGCCCCTGGACACTAATGTAACACCAACTGTTAACTACCTGCCCCAACATCTCCACTCAAGTCAAATCCCTGCCCTGCACATGGTATTGGAACTTGGGCccatccagaaacaacccctactGCCATATGCACAACATAGCCCGGGTGTGCACAACAGAGCCCAGGAGTTGGAACCCATAGAGAATGTTtccatatactgtactgtatatttatgAGTTGTTTGATTTGCAAGACAAATAGGGGAAAGAAAGACACTCATTCAGTAAGATTGCAGGGTATTGAACACTTTATAGCATCTTTAGTGACATCACAGCTTAAAAGACCACACTCTTCAACTGACAATTCATGTATTCATGTATTTGAACAACTGCATGAGGACAGAAATGATTCAGGTTCGAGACGTCCATGTGATCTGTGACttaaacatactgtacatacaagcTACGCTGTAACTTTTAGAAGCGGTCCTCTTTTACATGTATGCATGAGACAGGCGATGTATGATGAAATGT
>XM_036947321.1
GTAGGGGCAAGCAGCAGGGAGCAAGGCAGGGATTGggggcacagagacacagacacagaacacTGGGTCTGGACTCACTTCCGTGCGATAAGGCAGTTATTCACCCTGGACTATATTCAGAAGGTTAATTAATACAGTTGTGGATGTATATTTTGTTTGATCCTATGACACTGGACAACCTTTTTCATCACTTGTTGTTGACACGTATTGGGAACGTATTGACAGCAGCTTTCCTTTCTTGAGGAGACGCACACGGAGACGTACTGTACGTGAATTCTCCTCAGATACACATACTATACGTGTATCTTTCAGAAGggATTATGGCGAAACAACCTCCATCCCCTACCACTCCAGTATTTTTTACCCGGATCAGTGATCGGGATCTGACTGAGATCGAGCTACATTCCGTGGAGTCCATCAACGACCTGCACCGCACCCACCCAGAGCACAACCACAAAGgcAGCAGACGACCTCCCCTTCCTCCTGCTCCCTCCACCAATGGAAACCTCCATCTCCGGGACAGACCAGTTGTCTATCAGACAGGGCATCCAATGAGAAGCCGATGGCAGAGCACGCTCCGAGACCTGTTGATGCCCACCTCGTTTCGATACACCATGGGGTGTGCAGTGACATCACTGACGCTGTTGACGCTACTTCTTATCTTCTATTTCTTAGTGCAGCAGGGCAGCACTCTCCGGTCCCTAACGGAagcagtgagggagagacaggctGTGGCCCTAGAGGTCTCCCAGCTCATCCAGGAGCTGCAGGCGCTGCGCCACAACCTCACAGCCATCACGGGAGGATCCTGAGGAGCAGAGGTCACGGAGAGGAACACCCTTCACCCCTGGACCCTGAAATCCCCGTCCTAGTGGCCCCTGGACACTAATGTAACACCAACTGTTAACTACCTGCCCCAACATCTCCACTCAAGTCAAATCCCTGCCCTGCACATGGTATTGGAACTTGGGCccatccagaaacaacccctactGCCATATGCACAACATAGCCCGGGTGTGCACAACAGAGCCCAGGAGTTGGAACCCATAGAGAATGTTtccatatactgtactgtatatttatgAGTTGTTTGATTTGCAAGACAAATAGGGGAAAGAAAGACACTCATTCAGTAAGATTGCAGGGTATTGAACACTTTATAGCATCTTTAGTGACATCACAGCTTAAAAGACCACACTCTTCAACTGACAATTCATGTATTCATGTATTTGAACAACTGCATGAGGACAGAAATGATTCAGGTTCGAGACGTCCATGTGATCTGTGACttaaacatactgtacatacaagcTACGCTGTAACTTTTAGAAGCGGTCCTCTTTTACATGTATGCATGAGACAGGCGATGTATGATGAAATGT
>TU1587494
CAGTAAGATTGCAGGGTATTGAACACTTTATAGCATCTTTAGTGACATCACAGCTTAAAAGACCACACTCTTCAACTGACAATTCATGTATTCATGTATTTGAACAACTGCATGAGGACAGAAATGATTCAGGTTCGAGACGTCCATGTGATCTGTGACttaaacatactgtacatacaagcTACGCTGTAACTTTTAGAAGCGGTCCTCTTTTACATGTATGCATGAGACAGGCGATGTATGATGAAATGTCACAACCATTTAGTTACTGACAAAACACAGTGCAAATTTGTTCTGACTATCACAACTTAAACATGTCACAAGTGGAACTGAATTGTATAGAATGAATACGCTGAGAAAGTGCCTTAGCATGGCAACTGCCACAGTTTTCACTTTGATACACTTGGTGGAATTGCAATGATGCTACTGTATGCTGCGCATCAACCAAATAAACAAAAGAGGTGATATTATATATTGGTGATAGAGACTATATATTTTCCTGACACTAAGTGTTAGTGATTGAAGCTATCCTTTCCTGACACTTCTCACCCGCCCAGCCCTGATAGCACTGGCACAGGAAGTTAGTGCGGAGGTGGCTGAGGTCATGAGTGGGGTCAGGGAGGAAGTTGGAGAAGGAGTCAGAGAGTGGGATCATGTGGTCAGAGTAGGGGTCCCTTCTGGCACAGCGACCGTTGCCATGGCATCGCTCCTCGCTGCAACGCTGCACCCCTCTCTTCAGGGTGCTGATGTACACTCCCAGTTCAGAATTAATGTAGTCCCTCAGTATCTCACACTGATGCTTTGACTTAGCGAACGCCTGCTCCCCCCACAGCACCACTCCTGCCATCCCCAGCGCTGCACTCTCTCCCAGTGTGTGCTCCAGATCcgtCTTGTTGAGGAAGTGGAGGGTGTGAGCGAATGCCACTCTGGCATAGGGCAGTACAGGAGTTGCATGGGTGCTAGTGGGGTACTGATTCGCCACCCTCAGGGCCTCCAGAAGCCTATGTCTGACCAGGAGGGTGGCATCAGAGGACCCTGCCAGACGTTTGGGTAGGTAGATACTAGGGTAGAGGGCAGTGGACTGGCGCCACAGCCAGGCTAGCTGGTCATTCTTCTGCCTGGTCTTGGAGTGGCAGTGACCCGTGTAGCTGTGGCCTTTCTGCTTCCTGTGGTAGTTGAAGCATTCAGGGAAGCTGTAGAAGCCCCAGAGTCCCCTCGGTCGCAGACACACTCCTAACTGCAGCGTCTCAGACATGAAGTCCCTGGCACCCCTCTCAAACTCCTTACGGGCCAGGGAGTTCACTTCCTGTTTAGTTAGCTCTGGATGCTCCCCTCTCACTAGTTTTTTAGACAGCCGGCGGTACTCCAGCTTAATGCCGAAGTCTCTCACCCACAAGGGGCGCCACTCCTCCCAGTCGATGACGGCCAGGCCCCTGAACCCTGTCCTGAGCAGGGCTGAGATCTGGGTCTGGGCCAGGGCCAGGTGGGCCTCCAGGTCTCCCCTCTGGGGAACCCCTCCATTAACCTGCAGACCCTCCTGGGTGATGTAAGGGTAGAGCCCTAGCTGATTGTGGTAGAAGATGCTCATGTTCTGGCCCTGGAAGCGCTGCTGGTGGTTCTCCACGATGTCGAAGGCCCCCAGGTCCAGGTGGATGCCATAGTGTTCCTGGCAGCTCGCTGTGGGCATGTTCCAGACCATGGTGAAGGGCCTGCCCTGGACCACTGGCCCTGCAGCAGCCACAGACCTTCCAGACTCATCACCCACTGCCCCCCATTGGGGAGTGACAGGGatggtggagagaaggaggatgGTGAGAGGGAAGCTATGTAGCAGCATGGCTGTTCACTGGTTAATGTGTTGTCGTGCCTGGTTCTACTGCAGAGTGGACTAGTGACTggcaggcagagaggagagagaatgccaatagtctAATGACATCACACTGAACATGCTAATAGACGTCAAAAACCAGGAAATAACCTACATGACAGTTGTGACAGCAGCTCAACCAC

Function

NR:

description
hyaluronidase-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947320.1 False 1380 mRNA 0.49 4 54955862 54957989
XM_036947321.1 False 1385 mRNA 0.49 4 54955862 54957989
TU1587494 True 2013 lncRNA 0.52 4 54946478 54956113

Neighbor

gene id symbol gene type direction distance location
LOC110491107 NA coding downstream 315148 54639471 ~ 54640714 (-)
LOC118936330 NA coding downstream 319986 54635385 ~ 54635876 (-)
LOC110492306 LOC106566792 coding downstream 499846 54280345 ~ 54456016 (-)
LOC110491105 LOC106566796 coding downstream 718926 54163558 ~ 54236936 (-)
commd7 comd7 coding downstream 987727 53956911 ~ 53968135 (-)
sema3b LOC106566773 coding upstream 208774 55166763 ~ 55255352 (-)
actr8 actr8 coding upstream 392155 55350144 ~ 55372295 (-)
LOC110492331 LOC106566684 coding upstream 417746 55375735 ~ 55383021 (-)
LOC110491111 LOC106566685 coding upstream 439648 55397637 ~ 55517109 (-)
LOC110492334 dkga coding upstream 610388 55568377 ~ 55582222 (-)
G1389960 NA non-coding downstream 12012 54942907 ~ 54943850 (-)
G1389967 LOC106572271 non-coding downstream 16221 54937684 ~ 54939641 (-)
G1390004 NA non-coding downstream 32944 54922470 ~ 54922918 (-)
G1389999 NA non-coding downstream 40344 54915302 ~ 54915518 (-)
G1389961 NA non-coding downstream 41218 54910015 ~ 54914644 (-)
G1389965 amt non-coding upstream 8452 54966441 ~ 54967063 (-)
G1390017 NA non-coding upstream 12044 54970033 ~ 54970294 (-)
G1390199 NA non-coding upstream 114375 55072364 ~ 55072714 (-)
G1390240 NA non-coding upstream 182091 55140080 ~ 55140423 (-)
G1390241 NA non-coding upstream 184219 55142208 ~ 55142489 (-)
G1389763 NA other downstream 410619 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1222947 53730164 ~ 53757019 (-)
G1388236 NA other downstream 1922941 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 2383555 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 2527103 52379551 ~ 52428869 (-)
G1390030 ifrd2 other upstream 26829 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 866170 55824155 ~ 55826646 (-)
G1391586 NA other upstream 1106514 56064503 ~ 56064862 (-)
G1391624 NA other upstream 1267425 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 1323063 56240763 ~ 56293503 (-)

Expression


Co-expression Network